Ecosyste.ms: Issues

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GitHub / openpharma/mmrm issues and pull requests

#475 - add Lukas as contributor, bump up version, polish news

Pull Request - State: closed - Opened by danielinteractive 7 days ago - 2 comments

#474 - CRAN release 0.3.14

Issue - State: closed - Opened by danielinteractive 7 days ago

#473 - 472: fix TMB option warning

Pull Request - State: closed - Opened by danielinteractive 7 days ago - 5 comments

#472 - mmrm 0.3.13's first fit is different than subsequent ones

Issue - State: closed - Opened by luwidmer 10 days ago - 9 comments
Labels: bug

#471 - Create FUNDING.yml

Pull Request - State: closed - Opened by danielinteractive 12 days ago

#470 - 469 cran

Pull Request - State: closed - Opened by danielinteractive 12 days ago - 2 comments

#469 - Prepare 0.3.13 CRAN release

Issue - State: closed - Opened by danielinteractive 13 days ago - 3 comments
Labels: priority

#468 - signal non-convergence if theta_vcov is not positive definite

Pull Request - State: closed - Opened by danielinteractive 13 days ago - 3 comments

#467 - bad fit observed for specific data

Issue - State: open - Opened by clarkliming 21 days ago - 5 comments

#466 - 464: TMB warnings

Pull Request - State: closed - Opened by danielinteractive 25 days ago - 9 comments

#465 - Equivalency for SLICE Statement from PROC MIXED

Issue - State: open - Opened by hzhang2-cims about 1 month ago - 2 comments
Labels: enhancement

#464 - add warnings for 2 (old) TMB problems (TMB version, TMB option)

Issue - State: closed - Opened by danielinteractive about 1 month ago
Labels: priority

#463 - make unconditional prediction default

Pull Request - State: closed - Opened by clarkliming about 1 month ago - 12 comments

#462 - Numerical reproducibility issue for mmrm fit

Issue - State: closed - Opened by tobiasmuetze about 1 month ago - 40 comments
Labels: bug

#461 - `predict()` should not require response variable to be present in `newdata`

Issue - State: closed - Opened by danielinteractive about 2 months ago - 2 comments
Labels: bug

#460 - fix anova type 3

Pull Request - State: closed - Opened by clarkliming about 2 months ago - 15 comments

#459 - Contrast ordering - dicrepancy between SAS PROC MIXED and {mmrm}

Issue - State: closed - Opened by kkmann about 2 months ago - 6 comments
Labels: bug

#458 - Request to add feature for transformed residuals

Issue - State: closed - Opened by alex-lauer 2 months ago - 3 comments
Labels: enhancement

#457 - Add an S3 method AICc(object, ...)

Issue - State: closed - Opened by xiaohuagong 2 months ago - 2 comments

#456 - clean up simulations

Pull Request - State: closed - Opened by clarkliming 2 months ago - 3 comments

#455 - keep contrast using droplevels

Pull Request - State: closed - Opened by clarkliming 2 months ago - 11 comments

#452 - emmeans result not correct when log-transformed covariate is used

Issue - State: closed - Opened by lang-benjamin 3 months ago - 11 comments
Labels: discussion

#450 - fix emmeans on spatial covariance

Pull Request - State: closed - Opened by clarkliming 3 months ago - 3 comments

#449 - Please help on the Error message below

Issue - State: closed - Opened by studentxinwq 3 months ago - 2 comments
Labels: bug

#448 - Add an application vignette

Issue - State: open - Opened by danielinteractive 3 months ago - 6 comments
Labels: documentation, good first issue

#447 - change email, bump version

Pull Request - State: open - Opened by danielinteractive 3 months ago - 4 comments

#446 - LS estimates using spatial covariance

Issue - State: closed - Opened by hqian-lilly 4 months ago - 5 comments
Labels: bug, priority

#445 - Change Daniel's email address

Issue - State: open - Opened by danielinteractive 4 months ago

#444 - docs: Link the coverage badge to the HTML report

Pull Request - State: closed - Opened by cicdguy 4 months ago - 2 comments

#443 - Adapt missing data sims

Pull Request - State: closed - Opened by danielinteractive 4 months ago

#441 - fix note

Issue - State: closed - Opened by danielinteractive 5 months ago
Labels: SP1, devops

#440 - predict() does not work when variables are transformed within formula

Issue - State: closed - Opened by lang-benjamin 5 months ago - 2 comments
Labels: bug

#438 - add conditional arg for predict

Pull Request - State: closed - Opened by clarkliming 5 months ago - 3 comments

#437 - support for `{marginaleffects}`

Issue - State: closed - Opened by danielinteractive 6 months ago
Labels: help wanted, priority

#436 - add rhub workflow

Pull Request - State: closed - Opened by danielinteractive 6 months ago - 2 comments

#435 - [Question] Random intercept model

Issue - State: closed - Opened by kivanvan 7 months ago - 6 comments
Labels: enhancement

#434 - URGENT! Failed CRAN Checks: 2024-03-10

Issue - State: closed - Opened by github-actions[bot] 7 months ago - 1 comment

#433 - add tests for residual.R, bump up version

Pull Request - State: closed - Opened by danielinteractive 7 months ago - 4 comments

#432 - fix eigen deprecated warning

Pull Request - State: closed - Opened by clarkliming 7 months ago - 3 comments

#431 - avoid CRAN warning

Issue - State: closed - Opened by danielinteractive 7 months ago
Labels: bug

#422 - URGENT! Failed CRAN Checks: 2024-01-28

Issue - State: closed - Opened by github-actions[bot] 8 months ago

#421 - fitted values in mmrm

Issue - State: open - Opened by davood1983 8 months ago - 4 comments
Labels: bug

#420 - 419: make skipping code more general to also run on old R versions

Pull Request - State: closed - Opened by danielinteractive 8 months ago - 4 comments

#419 - test for `is_using_clang` needs to be skipped on old R versions

Issue - State: closed - Opened by danielinteractive 8 months ago
Labels: bug, priority

#418 - mmrm bioconductor dependancy

Issue - State: open - Opened by statasaurus 8 months ago - 4 comments
Labels: bug

#417 - update confint

Pull Request - State: closed - Opened by clarkliming 9 months ago - 4 comments

#416 - URGENT! Failed CRAN Checks: 2024-01-21

Issue - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment

#415 - 408: skip problematic tests on R-devel non-standard clang linux systems

Pull Request - State: closed - Opened by danielinteractive 9 months ago - 6 comments

#414 - Add a `confint` method to use t-distribution based quantiles

Issue - State: closed - Opened by danielinteractive 9 months ago - 2 comments
Labels: enhancement, SP3, priority

#413 - add blank line for items

Pull Request - State: closed - Opened by szcf-weiya 9 months ago - 1 comment

#412 - 410 converge

Pull Request - State: closed - Opened by clarkliming 9 months ago - 3 comments

#411 - fix cpp warning

Pull Request - State: closed - Opened by clarkliming 9 months ago - 2 comments

#410 - mmrm does not converge without specifying optimizer nlminb

Issue - State: closed - Opened by tobiasmuetze 9 months ago - 4 comments
Labels: bug, priority

#409 - fix c++ compiler warning

Issue - State: closed - Opened by clarkliming 9 months ago

#408 - URGENT! Failed CRAN Checks: 2024-01-14

Issue - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment

#407 - Broken link in package down site

Issue - State: closed - Opened by gowerc 9 months ago
Labels: bug

#406 - fix vignettes

Pull Request - State: closed - Opened by clarkliming 9 months ago - 4 comments

#405 - fix vignette formatting

Issue - State: closed - Opened by danielinteractive 9 months ago

#404 - fix notes

Pull Request - State: closed - Opened by clarkliming 9 months ago - 3 comments

#403 - fix notes

Issue - State: closed - Opened by danielinteractive 9 months ago

#402 - URGENT! Failed CRAN Checks: 2024-01-07

Issue - State: closed - Opened by github-actions[bot] 9 months ago - 1 comment

#401 - use data instead of full_frame in emp

Pull Request - State: closed - Opened by clarkliming 9 months ago

#400 - transformation in response is not allowed

Issue - State: closed - Opened by clarkliming 9 months ago - 3 comments

#398 - URGENT! Failed CRAN Checks: 2023-12-31

Issue - State: closed - Opened by github-actions[bot] 9 months ago - 4 comments

#397 - URGENT! Failed CRAN Checks: 2023-12-24

Issue - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment

#396 - enable other start values

Pull Request - State: closed - Opened by clarkliming 10 months ago - 7 comments

#394 - Add NEWS entry (under "New Features")

Issue - State: closed - Opened by clarkliming 10 months ago - 1 comment

#393 - potentially improve warning/error messages

Issue - State: open - Opened by clarkliming 10 months ago
Labels: SP3, devops

#392 - Implement type II/III testing

Issue - State: closed - Opened by clarkliming 10 months ago
Labels: enhancement, SP3

#391 - update anova type II and III

Pull Request - State: closed - Opened by clarkliming 10 months ago - 5 comments

#390 - Pass formula as unnamed argument to gls()

Pull Request - State: closed - Opened by ndunnewind 10 months ago - 1 comment

#389 - REPEATED and random intercept models are not supported？

Issue - State: closed - Opened by kunghiu 10 months ago - 4 comments
Labels: enhancement

#388 - URGENT! Failed CRAN Checks: 2023-12-17

Issue - State: closed - Opened by github-actions[bot] 10 months ago - 4 comments

#386 - 380: Idea to solve convergence problem

Pull Request - State: closed - Opened by danielinteractive 10 months ago - 4 comments

#385 - Once default optimizer fails, try all optimizers but with increased number of iterations

Issue - State: open - Opened by danielinteractive 10 months ago - 2 comments
Labels: enhancement, SP3

#384 - 67 anova

Pull Request - State: closed - Opened by clarkliming 10 months ago - 5 comments

#383 - 375: remove again staged.dependencies now that we are on CRAN

Pull Request - State: closed - Opened by danielinteractive 10 months ago - 2 comments

#382 - URGENT! Failed CRAN Checks: 2023-12-10

Issue - State: closed - Opened by github-actions[bot] 10 months ago - 2 comments

#381 - 377: Fix compiler warning for new CRAN hotfix

Pull Request - State: closed - Opened by danielinteractive 10 months ago - 2 comments

#380 - Convergence problem

Issue - State: closed - Opened by anatsa1 10 months ago - 9 comments

#379 - swapped CR2 and CR3

Pull Request - State: closed - Opened by clarkliming 10 months ago - 3 comments

#378 - Swapped definition of CR2 and CR3 for vcov in the manual

Issue - State: closed - Opened by Generalized 10 months ago - 2 comments
Labels: bug

#377 - Fix compiler warning

Issue - State: closed - Opened by danielinteractive 10 months ago
Labels: bug, SP1, priority

#376 - Updating a mmrm object - a discussion

Issue - State: closed - Opened by Generalized 10 months ago - 3 comments
Labels: enhancement

#374 - add tests for `residual.R` functions

Issue - State: closed - Opened by danielinteractive 11 months ago
Labels: SP1, devops

#373 - Improve emmeans doc with pairs / new release (another CRAN submission round)

Pull Request - State: closed - Opened by danielinteractive 11 months ago - 3 comments

#371 - Add `acf` (and maybe vignette with some `plot` examples)

Issue - State: open - Opened by Generalized 11 months ago - 3 comments
Labels: enhancement, SP5

#370 - add staged deps

Pull Request - State: closed - Opened by danielinteractive 11 months ago - 2 comments

#369 - URGENT! Failed CRAN Checks: 2023-11-05

Issue - State: closed - Opened by github-actions[bot] 11 months ago - 2 comments

#368 - Cook's distance or DFFIT, DFBETA, leverage

Issue - State: open - Opened by Generalized 11 months ago - 10 comments
Labels: enhancement, SP5

#367 - "mmrm" not available in engines of linear_reg() when using tidymodels

Issue - State: closed - Opened by Dannyzhd 11 months ago - 2 comments
Labels: bug

#366 - unify coordinates and visits_zero_index

Pull Request - State: closed - Opened by clarkliming 11 months ago - 5 comments

#365 - Searching the online manual fails (404)

Issue - State: closed - Opened by Generalized 11 months ago - 2 comments
Labels: bug

#364 - Don't rerun the check workflow after the Docs workflow finishes

Pull Request - State: closed - Opened by walkowif 11 months ago - 1 comment