Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / openfreeenergy/konnektor issues and pull requests

#105 - have konnektor docs live in openfe namespace

Issue - State: open - Opened by atravitz about 2 months ago

#104 - [DNM?] Test on gufe main

Pull Request - State: open - Opened by IAlibay 2 months ago - 1 comment

#103 - Add cron & dispatch to CI + bump python range

Pull Request - State: closed - Opened by IAlibay 2 months ago - 1 comment

#102 - fix recursion error in ChargeTransformer call

Issue - State: open - Opened by atravitz 2 months ago

#101 - replace references to "Transformation"

Issue - State: open - Opened by atravitz 2 months ago

#99 - fix mst concatenator default behavior

Issue - State: open - Opened by atravitz 2 months ago

#98 - update type hints

Issue - State: open - Opened by atravitz 2 months ago

#97 - add test for minimal redundant network unreachable

Issue - State: open - Opened by atravitz 3 months ago

#95 - make bare exception catching more explicit

Issue - State: open - Opened by atravitz 3 months ago

#94 - 89 add tests to cover missing scorer behavior

Pull Request - State: closed - Opened by atravitz 3 months ago - 1 comment

#93 - should NetworkPlanners require mappers?

Issue - State: open - Opened by atravitz 3 months ago

#92 - ExplicitNetworkGenerator missing unconnected nodes

Issue - State: open - Opened by atravitz 3 months ago - 2 comments

#91 - Update README.md

Pull Request - State: closed - Opened by RiesBen 3 months ago - 1 comment

#90 - [WIP] Updating the example notebooks

Pull Request - State: open - Opened by IAlibay 3 months ago - 1 comment

#89 - add tests to cover missing scorer behavior

Issue - State: closed - Opened by atravitz 3 months ago - 1 comment

#88 - pin rdkit to 2024.03.5

Pull Request - State: closed - Opened by atravitz 4 months ago - 1 comment

#87 - bug in rdkit causing widget drawing to fail

Issue - State: closed - Opened by atravitz 4 months ago - 1 comment

#86 - 85 review docstrings

Pull Request - State: closed - Opened by atravitz 4 months ago - 2 comments

#85 - Review docstrings

Issue - State: closed - Opened by atravitz 4 months ago
Labels: documentation

#84 - adapting the Konnektor behavior to openfe.

Pull Request - State: open - Opened by RiesBen 4 months ago - 5 comments

#83 - Update how to install

Pull Request - State: closed - Opened by mikemhenry 4 months ago - 1 comment

#82 - Add manifest so we can make sure to ship test and package data

Pull Request - State: closed - Opened by mikemhenry 5 months ago - 1 comment

#81 - fix CI

Pull Request - State: closed - Opened by RiesBen 5 months ago - 2 comments

#80 - Ci Fail for macOS

Issue - State: closed - Opened by RiesBen 5 months ago

#79 - Fix CI

Pull Request - State: closed - Opened by IAlibay 5 months ago - 2 comments

#78 - PyPi & conda-forge packaging

Issue - State: closed - Opened by IAlibay 5 months ago - 6 comments

#70 - Change Network planning calls in jupyter notebook

Issue - State: open - Opened by RiesBen 5 months ago
Labels: refactor, priority:medium, Konnektor

#69 - Reformulate to new Gufe Structure

Issue - State: open - Opened by RiesBen 5 months ago - 1 comment
Labels: refactor, Konnektor

#68 - Are Network generators factories?

Issue - State: open - Opened by IAlibay 6 months ago - 2 comments
Labels: refactor, Konnektor

#67 - Add example notebook to sphinx documentation

Issue - State: open - Opened by IAlibay 6 months ago
Labels: documentation, priority:medium, Konnektor

#66 - Add .git-blame-ignore-revs for `black` commits

Issue - State: open - Opened by IAlibay 6 months ago
Labels: refactor, Konnektor

#65 - Sphinx docs

Pull Request - State: closed - Opened by RiesBen 6 months ago - 2 comments
Labels: documentation, Konnektor

#64 - towards v1.0

Pull Request - State: closed - Opened by RiesBen 6 months ago - 3 comments
Labels: documentation, enhancement, Konnektor

#63 - Adding optional import ipycytoscape

Pull Request - State: closed - Opened by RiesBen 6 months ago
Labels: refactor

#62 - Refactor black

Pull Request - State: closed - Opened by RiesBen 6 months ago - 2 comments
Labels: refactor

#61 - fix algorithm NNedgesNetworkGenerator

Pull Request - State: closed - Opened by RiesBen 6 months ago - 1 comment

#60 - NNodeEdges edge criterion

Issue - State: closed - Opened by RiesBen 6 months ago - 1 comment
Labels: enhancement, Konnektor

#59 - Second Konnektor example notebook

Issue - State: closed - Opened by jameseastwood 6 months ago - 2 comments
Labels: documentation, Konnektor

#58 - Documentation_improvements: Jupyter Examples

Pull Request - State: closed - Opened by RiesBen 6 months ago - 4 comments
Labels: documentation

#57 - Add other intermediate generator to wrapper

Pull Request - State: closed - Opened by LindeSchoenmaker 6 months ago - 1 comment

#57 - Add other intermediate generator to wrapper

Pull Request - State: closed - Opened by LindeSchoenmaker 6 months ago - 1 comment

#56 - Docs - NetworkPlanner!

Issue - State: closed - Opened by RiesBen 7 months ago

#55 - Check MultiDiGraph problematic

Issue - State: closed - Opened by RiesBen 7 months ago - 1 comment

#54 - Make code black

Issue - State: closed - Opened by RiesBen 7 months ago
Labels: refactor

#53 - make ipycytoscape optional

Issue - State: closed - Opened by RiesBen 7 months ago

#52 - Update visualisation of molecules to 2D

Pull Request - State: closed - Opened by Julicancode 7 months ago - 2 comments

#51 - adding intermediate generator to konnektor

Pull Request - State: closed - Opened by RiesBen 8 months ago - 2 comments
Labels: enhancement, Konnektor

#50 - Twin star Network

Pull Request - State: closed - Opened by RiesBen 8 months ago - 2 comments
Labels: bug, enhancement

#50 - Twin star Network

Pull Request - State: closed - Opened by RiesBen 8 months ago - 2 comments
Labels: bug, enhancement

#49 - make the environment more lean (only used imports there!

Issue - State: closed - Opened by RiesBen 9 months ago - 1 comment
Labels: refactor, Konnektor

#49 - make the environment more lean (only used imports there!

Issue - State: closed - Opened by RiesBen 9 months ago - 1 comment
Labels: refactor, Konnektor

#48 - Network_Tools: Network Node Interpolation

Issue - State: closed - Opened by RiesBen 9 months ago
Labels: enhancement, Konnektor

#47 - Update docs

Pull Request - State: closed - Opened by RiesBen 9 months ago - 2 comments

#47 - Update docs

Pull Request - State: closed - Opened by RiesBen 9 months ago - 2 comments

#46 - Updating readme.md

Pull Request - State: closed - Opened by RiesBen 9 months ago - 1 comment
Labels: documentation, Konnektor

#46 - Updating readme.md

Pull Request - State: closed - Opened by RiesBen 9 months ago - 1 comment
Labels: documentation, Konnektor

#45 - initial docs starter

Pull Request - State: closed - Opened by RiesBen 9 months ago - 2 comments

#45 - initial docs starter

Pull Request - State: closed - Opened by RiesBen 9 months ago - 2 comments

#44 - Implementation: Build Scaffold Hop & Charge Change Network planner

Issue - State: closed - Opened by RiesBen 9 months ago
Labels: enhancement, Konnektor

#44 - Implementation: Build Scaffold Hop & Charge Change Network planner

Issue - State: closed - Opened by RiesBen 9 months ago
Labels: enhancement, Konnektor

#43 - Scaffold clustering

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 2 comments

#43 - Scaffold clustering

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 2 comments

#42 - Network generators

Pull Request - State: closed - Opened by RiesBen 9 months ago - 1 comment

#42 - Network generators

Pull Request - State: closed - Opened by RiesBen 9 months ago - 1 comment

#41 - Unittests network tool & Concatenator refactor

Pull Request - State: closed - Opened by RiesBen 9 months ago - 2 comments

#41 - Unittests network tool & Concatenator refactor

Pull Request - State: closed - Opened by RiesBen 9 months ago - 2 comments

#40 - Refactoring Code for Network tool & Network Planner - Concatenators

Pull Request - State: closed - Opened by RiesBen 9 months ago - 3 comments

#40 - Refactoring Code for Network tool & Network Planner - Concatenators

Pull Request - State: closed - Opened by RiesBen 9 months ago - 3 comments

#39 - Update environment.yml

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 2 comments

#39 - Update environment.yml

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 2 comments

#38 - Make CI Work!

Issue - State: closed - Opened by RiesBen 9 months ago

#37 - Planner: Additional ScorerCluster passable

Issue - State: closed - Opened by RiesBen 9 months ago
Labels: enhancement, Konnektor

#36 - implements simple charge clustering class

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 1 comment

#36 - implements simple charge clustering class

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 1 comment

#35 - visualisation review/refactor

Pull Request - State: closed - Opened by richardjgowers 9 months ago - 1 comment

#34 - Tool: Cyclisation of Networks

Issue - State: closed - Opened by RiesBen 10 months ago - 1 comment
Labels: enhancement, Konnektor

#33 - Refactor konnektor/visualization

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#33 - Refactor konnektor/visualization

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#32 - Refactor konnektor/utils

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#32 - Refactor konnektor/utils

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#31 - Refactor konnektor/network_tools

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#31 - Refactor konnektor/network_tools

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#30 - refactor Refactor konnektor/generators

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#29 - refactor konnektor/concatenator

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#29 - refactor konnektor/concatenator

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#28 - Refactor konnektor/network_analysis

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#28 - Refactor konnektor/network_analysis

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#27 - Refactor konnektor/data

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#27 - Refactor konnektor/data

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#26 - Charge Group - Grug Clustering

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#26 - Charge Group - Grug Clustering

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#25 - network algorithm: add network planners forced edges

Issue - State: open - Opened by RiesBen 10 months ago
Labels: enhancement, Konnektor

#24 - network algorithm: add network planners forbidden edges

Issue - State: open - Opened by RiesBen 10 months ago
Labels: enhancement, Konnektor

#23 - konnektor/network_planners/concatenator Algorithms: Cyclic Concatenator

Issue - State: closed - Opened by RiesBen 10 months ago - 1 comment
Labels: enhancement, Konnektor

#22 - Tool: Make Node more Redundant

Issue - State: closed - Opened by RiesBen 10 months ago - 1 comment
Labels: enhancement, Konnektor

#21 - Tool: CompoundClustering based on MarkushStructure

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#21 - Tool: CompoundClustering based on MarkushStructure

Issue - State: closed - Opened by RiesBen 10 months ago
Labels: Konnektor

#20 - implement Scaffold Clustering

Issue - State: closed - Opened by RiesBen 11 months ago
Labels: Konnektor