Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / opencb/opencga issues and pull requests
#2543 - TASK-6369 - Update R client log-in to include organization parameter
Pull Request -
State: open - Opened by mbleda 20 days ago
- 1 comment
#2542 - TASK-7330 - Hortonworks maven repositories are down
Pull Request -
State: open - Opened by j-coll 26 days ago
- 1 comment
#2541 - TASK-7192 - Enable Federation Support in XetaBase
Pull Request -
State: open - Opened by pfurio 29 days ago
#2540 - TASK-7320 - Compilation failure for hadoop compatibility issues
Pull Request -
State: closed - Opened by j-coll about 1 month ago
- 1 comment
#2539 - TASK-6757 - Deployment: Add Jupyter Notebooks feature
Pull Request -
State: open - Opened by juanfeSanahuja about 1 month ago
- 1 comment
#2538 - TASK-7301 - PR approve workflow also runs on PR comment
Pull Request -
State: closed - Opened by juanfeSanahuja about 1 month ago
- 2 comments
#2537 - TASK-6446 - Implement quotas management
Pull Request -
State: closed - Opened by pfurio 2 months ago
- 1 comment
#2536 - TASK-7225 - Warning events messages still take up a large part of the screen in Variant Browser
Pull Request -
State: closed - Opened by j-coll 2 months ago
- 1 comment
#2535 - TASK-6442 - Add Resources Management functionality
Pull Request -
State: open - Opened by pfurio 2 months ago
#2534 - TASK-5662 - Improve .bai and .bw files tracking
Pull Request -
State: closed - Opened by pfurio 2 months ago
#2533 - TASK-7213 - Port Patch 2.0.2 -> 2.4.0
Pull Request -
State: closed - Opened by juanfeSanahuja 3 months ago
- 1 comment
#2532 - TASK-7142 - OOME running calculate_pedigree_graph
Pull Request -
State: open - Opened by pfurio 3 months ago
- 1 comment
#2531 - TASK-7207 - Fix Organization migration issue
Pull Request -
State: closed - Opened by pfurio 3 months ago
- 1 comment
#2530 - TASK-6445 - Implement OpenCGA Workflows with NextFlow
Pull Request -
State: open - Opened by pfurio 3 months ago
- 1 comment
#2529 - TASK-7134 - Re-implement Aggregations Stats for all Catalog Browsers
Pull Request -
State: open - Opened by jtarraga 3 months ago
- 1 comment
#2528 - TASK-7187 - admin/users/sync web service doesn't work
Pull Request -
State: closed - Opened by pfurio 3 months ago
- 1 comment
#2527 - TASK-4682 - Error in VariantExport VCF : Duplicate allele (pre-step to exomiser)
Pull Request -
State: closed - Opened by j-coll 3 months ago
- 1 comment
#2526 - TASK-7175 - Port Patch 2.0.1 -> 2.4.0
Pull Request -
State: open - Opened by juanfeSanahuja 3 months ago
- 1 comment
#2525 - TASK-7046 - Add a new field "type" to Notes data model
Pull Request -
State: closed - Opened by pfurio 4 months ago
#2524 - TASK-7155: Upgrade MongoDB to v7.0
Pull Request -
State: closed - Opened by pfurio 4 months ago
#2523 - TASK-7118 - When migrating from XetaBase 1.x to 2.x users can't specify the Organization name
Pull Request -
State: closed - Opened by pfurio 4 months ago
- 1 comment
#2522 - TASK-6722 - Variant Walker to enable user defined variant analysis
Pull Request -
State: closed - Opened by j-coll 4 months ago
- 1 comment
#2521 - TASK-5688 - Allow study administrators to synchronise groups from LDAP/Azure
Pull Request -
State: open - Opened by pfurio 4 months ago
- 1 comment
#2520 - TASK-7004 - Variable set creation/update not possible with study admin permission
Pull Request -
State: closed - Opened by pfurio 4 months ago
- 1 comment
#2519 - TASK-7097 - Port Patch 3.3.0 -> 4.0.0 Xetabase 2.3.0 -> 3.0.0
Pull Request -
State: closed - Opened by juanfeSanahuja 4 months ago
#2518 - TASK-7092 - Port Patch 2.12.8 -> 3.3.0 Xetabase 1.10.8 -> 2.3.0
Pull Request -
State: closed - Opened by juanfeSanahuja 4 months ago
- 2 comments
#2517 - TASK-6754 - Create cohort with more than 1000 samples lead to MongoDB restarts
Pull Request -
State: closed - Opened by pfurio 4 months ago
- 1 comment
#2516 - TASK-7038 - Port Patch 3.2.2 -> 3.3.0 - Xetabase 2.2.2 -> 2.3.0
Pull Request -
State: closed - Opened by juanfeSanahuja 4 months ago
- 2 comments
#2515 - TASK-6983 - NPE at DetectIllegalConcurrentFileLoadingsMigration
Pull Request -
State: closed - Opened by j-coll 5 months ago
- 1 comment
#2514 - TASK-6983 - NPE at DetectIllegalConcurrentFileLoadingsMigration
Pull Request -
State: closed - Opened by j-coll 5 months ago
- 1 comment
#2513 - TASK-6780 - Port Patch 3.2.1 -> 4.0.0 - Xetabase 2.2.1 -> 3.0.0
Pull Request -
State: closed - Opened by juanfeSanahuja 5 months ago
- 1 comment
#2512 - TASK-6981 - Should not use same Solr timeout for reading and for indexing
Pull Request -
State: open - Opened by jtarraga 5 months ago
- 1 comment
#2511 - TASK-6998 - Fix cohort-sample reference migration
Pull Request -
State: closed - Opened by pfurio 5 months ago
- 1 comment
#2510 - TASK-6998 - Fix cohort-sample reference migration
Pull Request -
State: closed - Opened by pfurio 5 months ago
- 1 comment
#2509 - TASK-6992 - Error with token in the CLI
Pull Request -
State: closed - Opened by juanfeSanahuja 5 months ago
- 1 comment
#2508 - build(deps): bump org.apache.hadoop:hadoop-common from 2.10.0 to 3.4.0 in /opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.4
Pull Request -
State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, java
#2507 - TASK-4073 - avoid NPE when body of POST WS is null
Pull Request -
State: closed - Opened by pfurio 5 months ago
- 1 comment
#2506 - TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC
Pull Request -
State: closed - Opened by juanfeSanahuja 5 months ago
- 1 comment
#2505 - TASK-6871 - The default passwordExpirationDate is set to 0 instead of 90 days
Pull Request -
State: closed - Opened by pfurio 5 months ago
- 1 comment
#2504 - TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC
Pull Request -
State: closed - Opened by juanfeSanahuja 5 months ago
- 1 comment
#2503 - TASK-6765 - Improve VCF Export performance from secondary sample index
Pull Request -
State: open - Opened by j-coll 5 months ago
#2502 - TASK-6835 - Cellbase dependency error in opencga build
Pull Request -
State: closed - Opened by juanfeSanahuja 5 months ago
#2501 - TASK-6458 - Deployment: Xetabase kubernetes 1.29 compatibility
Pull Request -
State: closed - Opened by juanrizetta 5 months ago
#2500 - TASK-6807 - Pull request approve workflow Fail
Pull Request -
State: closed - Opened by juanfeSanahuja 6 months ago
- 1 comment
#2499 - TASK-6708 - Port Patch 2.12.7 -> 3.2.1 (Xetabase 1.10.7 -> 2.2.1)
Pull Request -
State: closed - Opened by juanfeSanahuja 6 months ago
- 2 comments
#2498 - TASK-6789 - Variant query fails with large skip values
Pull Request -
State: closed - Opened by j-coll 6 months ago
#2497 - TASK-6737 - Force parameter is not recognised in the variant delete operation
Pull Request -
State: closed - Opened by j-coll 6 months ago
- 1 comment
#2496 - TAKS-6756 - Error deleting files from archive table
Pull Request -
State: closed - Opened by j-coll 6 months ago
- 1 comment
#2495 - TASK-6219 - Automatic Variant Secondary Index
Pull Request -
State: open - Opened by j-coll 6 months ago
- 2 comments
#2494 - TASK-6636 - Job Kill method in JavaScript client of OpenCGA sends the params as POST body data
Pull Request -
State: closed - Opened by juanfeSanahuja 6 months ago
#2493 - TASK-6703 - Fix junit tests
Pull Request -
State: closed - Opened by j-coll 6 months ago
#2492 - TASK-6492 - Clinical Case query failed with cvCt value loss_of_function
Pull Request -
State: closed - Opened by jtarraga 7 months ago
#2491 - TASK-6515 - Port Patch 2.12.6.1 -> 3.2.1 (XB 1.10.6.1 -> 2.2.1)
Pull Request -
State: closed - Opened by juanfeSanahuja 7 months ago
- 1 comment
#2490 - TASK-6596 - Error loading long variants: DocValuesField "variantId" is too large, must be <=32766
Pull Request -
State: closed - Opened by j-coll 7 months ago
- 1 comment
#2489 - TASK-6626 - CLI file update sets empty attributes object
Pull Request -
State: closed - Opened by pfurio 7 months ago
- 1 comment
#2488 - TASK-6494 - Improve our current Password Policy for built-in authentication in OpenCGA
Pull Request -
State: open - Opened by pfurio 7 months ago
- 1 comment
#2487 - TASK-5610 Create the CVDB endpoint analysis/clinical/cvdb/variant/stats and overwrite analysis/clinical/variant
Pull Request -
State: closed - Opened by jtarraga 7 months ago
- 1 comment
#2486 - Task 5318 Implement custom annotator to allow clients private files
Pull Request -
State: closed - Opened by jtarraga 7 months ago
- 1 comment
#2485 - TASK-6568 - Missing tagsAction in notes/update
Pull Request -
State: closed - Opened by pfurio 7 months ago
- 1 comment
#2484 - TASK-6558 - Issue indexing variants with length 0 (i.e. start > end) and CIEND
Pull Request -
State: closed - Opened by j-coll 7 months ago
- 1 comment
#2483 - TASK-6522 - NoSuchMethodError okhttp3 in opencga-enterprise
Pull Request -
State: closed - Opened by j-coll 7 months ago
- 1 comment
#2482 - docs inaccessible
Issue -
State: open - Opened by mathob 7 months ago
- 1 comment
#2481 - TASK-6266 - OpenCGA-Storage test failed on develop branch
Pull Request -
State: closed - Opened by j-coll 7 months ago
- 1 comment
#2480 - TASK-5610 - Create the CVDB endpoint analysis/clinical/cvdb/variant/summary and overwrite analysis/clinical/variant
Pull Request -
State: open - Opened by jtarraga 8 months ago
- 1 comment
#2479 - Update opencb/opencga-demo Docker Image to Latest OpenCGA Version
Issue -
State: open - Opened by fengsy97 8 months ago
#2478 - TASK-6436 - OpenCGA-Storage test failed on release-2.12.x branch
Pull Request -
State: closed - Opened by j-coll 8 months ago
- 1 comment
#2477 - TASK-6399 - CI/CD: Include save reports option for tasks workflows
Pull Request -
State: closed - Opened by juanfeSanahuja 8 months ago
#2476 - TASK-6089 - Automation: Optimise Job management
Pull Request -
State: closed - Opened by pfurio 8 months ago
#2475 - demo site unreachable
Issue -
State: open - Opened by mathob 8 months ago
#2474 - TASK-5964 - Clinical Improvements
Pull Request -
State: closed - Opened by pfurio 8 months ago
#2473 - TASK-6345 - Cohort and sample double association is missing
Pull Request -
State: closed - Opened by pfurio 8 months ago
- 1 comment
#2472 - TASK-6345 - Cohort and sample double association is missing
Pull Request -
State: closed - Opened by pfurio 8 months ago
#2471 - TASK-6311 - Error querying by CompoundHet - Require exactly one study
Pull Request -
State: closed - Opened by j-coll 8 months ago
- 1 comment
#2470 - TASK-6413 - Allow migrations from 3.0.0.1 to 3.2.x
Pull Request -
State: closed - Opened by pfurio 8 months ago
#2469 - TASK-6324 - Simplify QC analysis by launching a single job
Pull Request -
State: open - Opened by jtarraga 8 months ago
- 1 comment
#2468 - TASK-5960 - Update python client log-in to include organization parameter
Pull Request -
State: closed - Opened by dapregi 8 months ago
- 1 comment
Labels: client
#2467 - TASK-4970 - New CI/CD should be triggered when a PR is approved for OpenCGA repository
Pull Request -
State: closed - Opened by juanfeSanahuja 8 months ago
#2466 - TASK-5278 - Add haploid calls treatment parameter to family-qc and relatedness
Pull Request -
State: open - Opened by jtarraga 8 months ago
#2465 - TASK-5516 - Speed-up CVDB queries
Pull Request -
State: closed - Opened by jtarraga 8 months ago
- 1 comment
#2464 - TASK-6281 - Port Patch 2.0.0.1 -> 2.2.0
Pull Request -
State: closed - Opened by juanfeSanahuja 8 months ago
#2463 - TASK-6357 - Port Patch 1.10.5 -> 2.2.0
Pull Request -
State: closed - Opened by juanfeSanahuja 8 months ago
#2462 - TASK-6255 - Update Exomiser Docker image to v14.0.0
Pull Request -
State: closed - Opened by jtarraga 9 months ago
- 1 comment
#2461 - TASK-5979 - Automatize validation of SSO with CAS for OpenCGA Enterprise 2.x.x
Pull Request -
State: closed - Opened by pfurio 9 months ago
#2460 - TASK-5318 - Implement custom annotator to allow clients private files
Pull Request -
State: closed - Opened by jtarraga 9 months ago
#2459 - TASK-5895 - HBaseLockManager Inconsistent lock status
Pull Request -
State: closed - Opened by j-coll 9 months ago
- 1 comment
#2458 - TASK-6322 - Study admins should be able to update Project
Pull Request -
State: closed - Opened by pfurio 9 months ago
- 1 comment
#2457 - TASK-6136 - OpenCGA-Storage tests failed on OpenCGA 2.12.x
Pull Request -
State: closed - Opened by j-coll 9 months ago
- 1 comment
#2456 - TASK-6305 - Error executing migrations. "requires additional parameters and need to be run manually."
Pull Request -
State: closed - Opened by j-coll 9 months ago
- 1 comment
#2455 - TASK-6302 - Improve clients auto-generation process
Pull Request -
State: closed - Opened by j-coll 9 months ago
#2454 - TASK-5448 - Add mandatory variant setup step
Pull Request -
State: closed - Opened by j-coll 9 months ago
#2453 - TASK-6280 - Port Patch 1.10.4.1 -> 2.2.0
Pull Request -
State: closed - Opened by juanfeSanahuja 9 months ago
- 1 comment
#2452 - TASK-6256 - Main OpenCGA v3.0.0 migration loses track of previous migration executions
Pull Request -
State: closed - Opened by pfurio 9 months ago
- 1 comment
#2451 - TASK-6245 - Main OpenCGA v3 migration is broken
Pull Request -
State: closed - Opened by pfurio 9 months ago
#2450 - TASK-6240 - Symbolic inversions <INV> not indexed during data load
Pull Request -
State: closed - Opened by j-coll 9 months ago
- 1 comment
#2449 - TASK-6005 - Error loading variants : "Row length 45522 is > 32767"
Pull Request -
State: closed - Opened by j-coll 9 months ago
- 1 comment
#2448 - TASK-6231 - Port Patch 2.12.4.1 -> 2.12.5 (XB 1.10.4.1 -> 1.10.5)
Pull Request -
State: closed - Opened by juanfeSanahuja 9 months ago
- 1 comment
#2447 - TASK-6185 - Modify release workflows for OpenCB and Enterprise to include all 4 Hadoop flavors
Pull Request -
State: closed - Opened by juanfeSanahuja 9 months ago
#2446 - TASK-6209 - Error executing MapReduce operations in emr6.13
Pull Request -
State: closed - Opened by j-coll 9 months ago
#2445 - TASK-6201 - Outdated variant stats of running operations are not returned
Pull Request -
State: closed - Opened by j-coll 10 months ago
- 1 comment
#2444 - TASK-6201 - Outdated variant stats of running operations are not returned
Pull Request -
State: closed - Opened by j-coll 10 months ago
- 1 comment