Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / opencb/cellbase issues and pull requests

#707 - TASK-6807 - Pull request approve workflow Fail

Pull Request - State: closed - Opened by juanfeSanahuja 29 days ago

#706 - TASK-6647 - Fix Port Patch 1.10.4 -> 2.2.1 develop

Pull Request - State: closed - Opened by juanfeSanahuja about 2 months ago

#705 - TASK-6647 - Fix Port Patch 1.10.4 -> 2.2.1 - release

Pull Request - State: closed - Opened by juanfeSanahuja about 2 months ago

#704 - TASK-6647 - Port Patch Cellbase 5.8.3 -> 6.2.1

Pull Request - State: closed - Opened by juanfeSanahuja about 2 months ago

#703 - TASK-6647 - Port Patch Cellbase 5.8.3 -> 6.2.1

Pull Request - State: closed - Opened by juanfeSanahuja about 2 months ago

#702 - TASK-6515 - Port Patch 1.10.6(.1) -> 2.2.1

Pull Request - State: closed - Opened by juanfeSanahuja 2 months ago

#701 - TASK-5318 Implement custom annotator to allow clients private files

Pull Request - State: closed - Opened by jtarraga 2 months ago - 1 comment

#699 - Include API-KEY for CADD scores

Pull Request - State: open - Opened by jtarraga 3 months ago

#698 - TASK-5388 - Add AlphaMissense predictions

Pull Request - State: open - Opened by jtarraga 3 months ago

#697 - TASK-5387 - Add Polygenic Scores (PGS)

Pull Request - State: open - Opened by jtarraga 3 months ago

#696 - TASK-5564 - Update data sources for CellBase 6.2

Pull Request - State: open - Opened by jtarraga 3 months ago

#695 - TASK-5318 - Implement custom annotator to allow clients private files

Pull Request - State: open - Opened by jtarraga 3 months ago - 1 comment

#693 - TASK-6347 Fix normalization issue in ClinVar

Pull Request - State: closed - Opened by jtarraga 3 months ago

#689 - TASK-5789 - Add dbSNP to CellBase

Pull Request - State: closed - Opened by jtarraga 6 months ago - 1 comment

#688 - Fix CellBase endpoint: meta/{species}/versions

Pull Request - State: closed - Opened by jtarraga 6 months ago

#687 - TASK-5385 Add mitochondrial data from Gnomad v3.1.2

Pull Request - State: closed - Opened by jtarraga 8 months ago - 1 comment

#686 - TASK-5571 Autocomplete with ontologies not working for CMH

Pull Request - State: closed - Opened by jtarraga 8 months ago - 1 comment

#684 - TASK-5392

Pull Request - State: closed - Opened by imedina 8 months ago - 1 comment

#683 - TASK-5457 Fix CellBase annotation queries for SV variants

Pull Request - State: open - Opened by jtarraga 9 months ago - 1 comment

#681 - TASK-4437 - Update general dependencies from dependabot (security alerts)

Pull Request - State: open - Opened by juanfeSanahuja 9 months ago - 1 comment

#680 - TASK-5425 - PortPatch 1.10.1 -> 2.0.0

Pull Request - State: closed - Opened by juanfeSanahuja 10 months ago - 1 comment

#679 - TASK-5340 Fix CellBase web services initialization

Pull Request - State: closed - Opened by jtarraga 10 months ago - 1 comment

#678 - TASK-5212 Fix 'cellbase-admin.sh build' for clinical variants

Pull Request - State: closed - Opened by jtarraga 11 months ago - 1 comment

#677 - TASK-5212 Fix 'cellbase-admin.sh build' for clinical variants

Pull Request - State: closed - Opened by jtarraga 11 months ago - 1 comment

#676 - TASK-4988 Fix CellBase CLI to create API keys that only include a quota

Pull Request - State: closed - Opened by jtarraga 11 months ago - 1 comment

#674 - TASK-5120 - Port Patch 1.6.5 -> 1.10.0

Pull Request - State: closed - Opened by juanfeSanahuja 12 months ago - 2 comments

#673 - TASK-5120 - Port Patch 1.6.5 -> 1.10.0

Pull Request - State: closed - Opened by juanfeSanahuja 12 months ago - 1 comment

#672 - Fix insertion with n consequence type

Pull Request - State: open - Opened by awab-ahmed about 1 year ago

#671 - TASK-2095 - Duplicated libraries at opencga/build/libs

Pull Request - State: closed - Opened by juanfeSanahuja about 1 year ago - 1 comment

#665 - Fix decomposed mnv codon change

Pull Request - State: closed - Opened by awab-ahmed about 1 year ago

#664 - TASK-4967 - ArrayOutOfBounds using cellbase client

Pull Request - State: closed - Opened by j-coll about 1 year ago - 1 comment

#663 - fix long mnv for 1bp ref or alt

Pull Request - State: closed - Opened by awab-ahmed about 1 year ago

#662 - TASK-4761

Pull Request - State: closed - Opened by jtarraga about 1 year ago - 1 comment

#661 - Fix long mnv bug

Pull Request - State: closed - Opened by awab-ahmed about 1 year ago

#660 - TASK-4641- Implement an API key to control the number of queries

Pull Request - State: closed - Opened by jtarraga about 1 year ago - 1 comment

#659 - TASK-4225

Pull Request - State: closed - Opened by jtarraga about 1 year ago - 1 comment

#658 - TASK-4464

Pull Request - State: closed - Opened by juanfeSanahuja over 1 year ago - 1 comment

#657 - build(deps): bump jetty-server from 9.4.17.v20190418 to 9.4.51.v20230217

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#656 - TASK-4289 - Upgrade JVM to 8u372 in opencga Docker

Pull Request - State: closed - Opened by juanrizetta over 1 year ago - 1 comment

#655 - TASK-4530 Fix CellBase normalization configuration

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#654 - TASK-4157 Implement support for setting a default data release for each CellBase version

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#653 - TASK-1111 Add Pharmagenomics data to CellBase

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#652 - TASK-4171 Fix MongoDB driver in cellbase 5.1

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 2 comments

#651 - build(deps): bump jetty-server from 9.4.17.v20190418 to 10.0.14

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#650 - TASK-4163

Pull Request - State: closed - Opened by juanfeSanahuja over 1 year ago - 1 comment

#649 - TASK-4032 - CI/CD new Workflow to publish CELLBASE docker on TASK branch

Pull Request - State: closed - Opened by juanfeSanahuja over 1 year ago - 1 comment

#648 - TASK-4136 - Create a job to deploy docker on TASK branches

Pull Request - State: closed - Opened by juanfeSanahuja over 1 year ago - 1 comment

#647 - Issues with cellbase URL for gnomad?

Issue - State: open - Opened by bbitarello over 1 year ago

#645 - TASK-3809 Fix variant annotation for consequence types

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#644 - TASK-3809 Fix variant annotation for consequence types

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#643 - TASK-3953 - CI/CD in task.yml to deploy project dependencies

Pull Request - State: closed - Opened by juanfeSanahuja over 1 year ago - 1 comment

#641 - TASK-2270

Pull Request - State: closed - Opened by juanfeSanahuja over 1 year ago - 1 comment

#640 - TASK-3809 Fix variant annotation for consequence types

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#639 - TASK-3809

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#638 - TASK-2579 Fix PubMed data loading

Pull Request - State: closed - Opened by jtarraga over 1 year ago - 1 comment

#637 - TASK-2438

Pull Request - State: closed - Opened by imedina over 1 year ago - 1 comment

#636 - TASK-1201 - Use dataRelease from Cellbase in OpenCGA

Pull Request - State: closed - Opened by j-coll over 1 year ago - 1 comment

#634 - TASK-2294

Pull Request - State: closed - Opened by jtarraga almost 2 years ago - 1 comment

#633 - TASK-2481 Fix "path collision" from MongoDB 4.4

Pull Request - State: closed - Opened by jtarraga almost 2 years ago - 1 comment

#631 - TASK-2428 - Pycellbase cbtools not working for cellbase v5

Pull Request - State: open - Opened by dapregi almost 2 years ago - 1 comment
Labels: bug, client

#630 - add an optional filter to VCF variant annotation

Pull Request - State: open - Opened by julie-sullivan almost 2 years ago

#629 - fix consequence types for CNVs with 2 copies

Pull Request - State: open - Opened by julie-sullivan almost 2 years ago

#628 - fix cnvpadding param. TEST FAILING

Pull Request - State: open - Opened by julie-sullivan almost 2 years ago

#627 - pad overlap queries too

Pull Request - State: closed - Opened by julie-sullivan almost 2 years ago

#626 - CellBase v4 - fix cnvPadding bug

Pull Request - State: closed - Opened by julie-sullivan almost 2 years ago - 1 comment

#625 - add an optional filter to VCF variant annotation

Pull Request - State: closed - Opened by julie-sullivan almost 2 years ago - 1 comment

#624 - MNVs - other variants considered as part of phased MNV annotation

Pull Request - State: open - Opened by julie-sullivan almost 2 years ago

#623 - Remove ensembl compara and funcgen

Pull Request - State: open - Opened by julie-sullivan almost 2 years ago

#622 - TASK-2273

Pull Request - State: closed - Opened by imedina almost 2 years ago - 1 comment

#620 - Remove docker queries from download

Pull Request - State: closed - Opened by julie-sullivan almost 2 years ago - 1 comment

#619 - remove static to fix concurrency issues

Pull Request - State: closed - Opened by julie-sullivan almost 2 years ago

#618 - TASK-2154 - Pycellbase error when handling query results

Pull Request - State: closed - Opened by dapregi almost 2 years ago - 1 comment
Labels: bug, client

#617 - TASK-2109

Pull Request - State: closed - Opened by jtarraga about 2 years ago - 1 comment

#616 - TASK-2041

Pull Request - State: closed - Opened by jtarraga about 2 years ago - 1 comment

#615 - TASK-2041

Pull Request - State: closed - Opened by jtarraga about 2 years ago - 1 comment

#614 - Thread safety. Also, add new MNV test, remove log message

Pull Request - State: closed - Opened by julie-sullivan about 2 years ago

#613 - remove static to make HGVS calculations threadsafe

Pull Request - State: closed - Opened by julie-sullivan about 2 years ago

#612 - add logging to HGVSc insertion/deletion calculations

Pull Request - State: closed - Opened by julie-sullivan about 2 years ago - 1 comment

#611 - Revert "Task 1625"

Pull Request - State: closed - Opened by casep about 2 years ago - 2 comments

#610 - Add logging to HGVSc generation, lower log level

Pull Request - State: closed - Opened by julie-sullivan about 2 years ago

#609 - chore: Add unit tests for HgvsCalculator

Pull Request - State: open - Opened by squinker about 2 years ago

#608 - TASK-1718

Pull Request - State: closed - Opened by juanfeSanahuja about 2 years ago - 1 comment

#607 - downgrade jackson version #TASK-1774

Pull Request - State: closed - Opened by phamidko about 2 years ago - 1 comment

#606 - TASK-1776

Pull Request - State: closed - Opened by jtarraga about 2 years ago - 1 comment

#605 - Add backwards compatibility for response and result

Pull Request - State: closed - Opened by dapregi about 2 years ago

#604 - Task 1625

Pull Request - State: closed - Opened by phamidko about 2 years ago - 2 comments