openbiox/UCSCXenaShiny issues and pull requests

#256 - ZENODO DATA PROBLEMS

Issue - State: closed - Opened by Tardins over 1 year ago - 4 comments

#254 - Error: Quick PanCan Analysis, TCGA: Association between Molecular Profile And TMB/Stemness/MSI (radar show)

Issue - State: closed - Opened by quiquemedina over 1 year ago - 8 comments

#253 - check issue

Issue - State: closed - Opened by ShixiangWang over 1 year ago

#252 - Failure errors QuickPanCan Analysis CCLE: Drug response Association and CCLE: Drug response

Issue - State: closed - Opened by quiquemedina almost 2 years ago - 2 comments

#251 - Questions of pan-cancer TCGA gene expression data

Issue - State: closed - Opened by xiw588 almost 2 years ago - 3 comments
Labels: question

#250 - Pan-cancer analysis

Issue - State: closed - Opened by xiw588 almost 2 years ago - 11 comments
Labels: enhancement, pan-cancer-analysis

#249 - pcawg surv 模块没有 cancer type 分组

Issue - State: closed - Opened by ShixiangWang almost 2 years ago - 1 comment
Labels: enhancement

#248 - 某个待研究基因与某个通路（癌通路？）的相关性分析?

Issue - State: closed - Opened by ShixiangWang over 2 years ago - 1 comment
Labels: enhancement, pan-cancer-analysis

#247 - mislabelled color mapping

Issue - State: closed - Opened by ShixiangWang over 2 years ago

#246 - 支持PCA分析

Issue - State: closed - Opened by ShixiangWang over 2 years ago - 5 comments
Labels: enhancement, pan-cancer-analysis

#245 - 支持下载多个基因的数据生成表格

Issue - State: closed - Opened by ShixiangWang over 2 years ago - 1 comment
Labels: enhancement

#244 - GDC TARGET-OS survival analysis – gene signature -WARNING MESSAGE The column you selected seems to have no valid data.

Issue - State: closed - Opened by quiquemedina over 2 years ago - 3 comments

#243 - Update modules-pancan-radar.R

Pull Request - State: closed - Opened by Byronxy over 2 years ago

#242 - Radar plot “stemness” does not plot the “ACC” tumor type

Issue - State: closed - Opened by quiquemedina over 2 years ago - 1 comment

#241 - 泛癌分析T-N对比去除无N的癌症类型

Issue - State: closed - Opened by ShixiangWang over 2 years ago
Labels: enhancement

#240 - Error in shinythemes::shinytheme("flatly")

Issue - State: closed - Opened by victor-lopes2 over 2 years ago - 1 comment
Labels: bug, question

#239 - Radar plot usage in R - Visualize Correlation between Gene and Tumor Stemness

Issue - State: closed - Opened by quiquemedina almost 3 years ago - 2 comments

#238 - suggest adding Biotreasury bagde

Pull Request - State: closed - Opened by likelet almost 3 years ago

#237 - MSI的数据来源

Issue - State: closed - Opened by ShixiangWang almost 3 years ago - 5 comments
Labels: help wanted

#236 - 支持分类合并

Issue - State: closed - Opened by ShixiangWang almost 3 years ago - 1 comment
Labels: enhancement

#235 - Querying multiple identifiers at the same time for genomic signature BUG

Issue - State: closed - Opened by Tardins almost 3 years ago - 3 comments

#234 - Issue formulas of gene names with [-] (MT-ND1 + MT-CO1) do not plot

Issue - State: closed - Opened by quiquemedina almost 3 years ago - 7 comments
Labels: bug

#233 - 通用分析相关图错误判断存在问题

Issue - State: closed - Opened by ShixiangWang almost 3 years ago
Labels: bug

#232 - K-M plot outputs group colors reversed (Survival analysis)

Issue - State: closed - Opened by quiquemedina almost 3 years ago - 3 comments
Labels: enhancement

#231 - K-M plot outputs group colors reversed (Survival analysis)

Issue - State: closed - Opened by quiquemedina almost 3 years ago

#230 - application issue

Issue - State: closed - Opened by ShixiangWang about 3 years ago - 7 comments
Labels: bug

#229 - Formula as Gene

Issue - State: closed - Opened by guillaumecharbonnier about 3 years ago - 4 comments
Labels: bug

#228 - 一个想法：能不能接入 cbioportal

Issue - State: open - Opened by ShixiangWang about 3 years ago - 6 comments
Labels: question, plan

#227 - update zenodo link

Issue - State: closed - Opened by ShixiangWang about 3 years ago - 12 comments
Labels: enhancement

#226 - 预更新pan-cancer conserved immune subtype 数据

Issue - State: closed - Opened by Byronxy about 3 years ago - 3 comments

#225 - TCGA:Molecular Profile Cox analysis

Issue - State: closed - Opened by zxhu1987 about 3 years ago - 21 comments
Labels: enhancement

#224 - 使用github action构建镜像并发布到 dockerhub

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment
Labels: enhancement

#223 - Further comments from Reviewer

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 5 comments

#222 - 生存分析界面一直显示加载

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 3 comments
Labels: bug

#221 - merge into master

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#220 - 优化UI

Pull Request - State: closed - Opened by longfei8533 over 3 years ago - 1 comment

#219 - #214 reviewer2 revision for topics 4-5

Pull Request - State: closed - Opened by kaigu1990 over 3 years ago - 1 comment

#218 - 自定义分组热图

Issue - State: open - Opened by ShixiangWang over 3 years ago - 2 comments
Labels: enhancement, plan

#217 - UCSCXenaTools/Shiny Download Stats

Issue - State: closed - Opened by ShixiangWang over 3 years ago
Labels: summary

#216 - 修回清单

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment
Labels: plan, 任务分配

#215 - 增加自定义数据分析

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 10 comments
Labels: enhancement

#214 - Reviewer2关于工具使用的反馈

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 23 comments
Labels: bug, enhancement, question

#213 - 增加相关性分析输出选项

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#212 - 解决数据集预先加载

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#211 - Add Docker Container

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#210 - Bioinformatics修回

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 8 comments
Labels: plan, 任务分配, todo

#209 - PCAWG 生存分析安装后无法正常工作

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment
Labels: bug

#208 - 新增 PCAWG 分析可视化模块

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment

#207 - add troubleshooting section and

Pull Request - State: closed - Opened by qins over 3 years ago - 1 comment

#206 - install error of development version

Issue - State: closed - Opened by qins over 3 years ago - 3 comments
Labels: good first issue

#205 - 生存图图例换行优化

Issue - State: closed - Opened by ShixiangWang over 3 years ago
Labels: enhancement

#204 - PCAWG开发

Issue - State: closed - Opened by Byronxy over 3 years ago - 10 comments
Labels: enhancement

#203 - 调整点大小

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#202 - 来自李唐建的反馈

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 7 comments
Labels: bug, enhancement

#201 - drug 分析增强

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 25 comments
Labels: enhancement

#200 - Hiplot 部署服务问题

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 6 comments
Labels: bug

#199 - update CCLE gene drug response diff

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#198 - Update CCLE

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#197 - Update modules-ccle-gene-drug-target.R

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#196 - update

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#195 - 增加CCLE gene-target可视化

Pull Request - State: closed - Opened by Byronxy over 3 years ago - 6 comments

#194 - Yx

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#193 - V1

Pull Request - State: closed - Opened by Byronxy over 3 years ago - 1 comment

#192 - update

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#191 - update pancan vis

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#190 - update CCLE

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#189 - 当前阶段计划

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 17 comments

#188 - fix crash

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#187 - Yx

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#186 - fix bug

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#185 - vis 系列函数与 Shiny 接口

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 26 comments
Labels: bug, enhancement

#184 - Update modules-pancan-search.R

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#183 - update

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#182 - Yx

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#181 - update

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#180 - Yixiong

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#179 - gganatomy能否返回各个器官基因表达量的平均值

Issue - State: closed - Opened by Byronxy over 3 years ago - 1 comment

#178 - Yixiong

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#177 - Ccle

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment

#176 - 提供转录本列表

Issue - State: closed - Opened by ShixiangWang over 3 years ago
Labels: enhancement

#175 - V1 更新

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#174 - 投稿准备

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment
Labels: todo

#173 - V1

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#172 - 增加基因与TIL泛癌分析

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#171 - 拉取 V1 更新

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#170 - Yixiong

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#169 - 拉取最新的更新到主分支

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#168 - 修改modules

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#167 - 优化单基因分析

Pull Request - State: closed - Opened by Byronxy over 3 years ago

#166 - General analysis page

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 6 comments
Labels: enhancement

#165 - 日志 track 与管理引入

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 1 comment
Labels: enhancement

#158 - Wsx

Pull Request - State: closed - Opened by ShixiangWang over 3 years ago

#153 - 单基因分析功能参考

Issue - State: closed - Opened by Byronxy over 3 years ago - 2 comments
Labels: plan, todo

#150 - XenaShiny 亮点罗列

Issue - State: closed - Opened by ShixiangWang over 3 years ago
Labels: enhancement, plan

#148 - 功能 Coding Plan

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 3 comments
Labels: enhancement, 任务分配, todo

#145 - 专刊投稿

Issue - State: closed - Opened by ShixiangWang over 3 years ago - 20 comments
Labels: enhancement, plan, todo

#107 - 下一个大的方向计划：多组学数据整合与联动

Issue - State: closed - Opened by ShixiangWang over 4 years ago - 2 comments
Labels: plan

#47 - 开发流程和工具链

Issue - State: closed - Opened by ShixiangWang about 5 years ago - 10 comments
Labels: plan, todo, summary

#44 - 未来开发计划

Issue - State: closed - Opened by ShixiangWang about 5 years ago - 11 comments
Labels: plan, todo

GitHub / openbiox/UCSCXenaShiny issues and pull requests