Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / openbiox/UCSCXenaShiny issues and pull requests

#355 - 求助

Issue - State: open - Opened by jo821020 10 days ago - 4 comments
Labels: bug

#354 - Add mutation type to TCGA modules of Cox analysis

Pull Request - State: closed - Opened by lishensuo 23 days ago

#353 - 针对性增加不同肿瘤经典分型的分析

Issue - State: open - Opened by ShixiangWang 23 days ago - 2 comments
Labels: enhancement

#351 - Optimize some details

Pull Request - State: closed - Opened by lishensuo about 1 month ago

#350 - modify tcga_genome_instability

Pull Request - State: closed - Opened by lishensuo about 2 months ago - 1 comment

#349 - 样本id substr和重复问题

Issue - State: closed - Opened by ShixiangWang about 2 months ago - 5 comments

#348 - modify .opt_pancan

Pull Request - State: closed - Opened by lishensuo about 2 months ago

#346 - Modify README.md file

Pull Request - State: closed - Opened by lishensuo 2 months ago

#345 - Cross Omics Analysis

Issue - State: open - Opened by lishensuo 2 months ago

#344 - Modify some UI details

Pull Request - State: closed - Opened by lishensuo 2 months ago

#343 - 新增non-omics数据访问函数

Issue - State: open - Opened by lishensuo 2 months ago

#342 - change inst\shinyapp\helper figures to tencent cloud

Pull Request - State: closed - Opened by lishensuo 3 months ago

#341 - app_run2 模式下的资源加载问题

Issue - State: closed - Opened by ShixiangWang 3 months ago - 9 comments
Labels: bug

#340 - 考虑部署一个v1版本

Issue - State: closed - Opened by ShixiangWang 3 months ago - 2 comments
Labels: enhancement

#339 - adjust levels of cox analysis

Pull Request - State: closed - Opened by lishensuo 3 months ago

#338 - improve ui of TPC analysis and navigation bar

Pull Request - State: closed - Opened by lishensuo 3 months ago - 1 comment

#337 - improve UI of TPC modules

Pull Request - State: closed - Opened by lishensuo 3 months ago

#336 - fix small bugs & adjust homepage

Pull Request - State: closed - Opened by lishensuo 3 months ago

#335 - app_run()报错

Issue - State: closed - Opened by zxhu1987 3 months ago

#334 - improve the input of ccle drug analysis

Pull Request - State: closed - Opened by lishensuo 3 months ago - 2 comments

#333 - get_pancan_gene_value() failed

Issue - State: closed - Opened by 234pk 3 months ago - 2 comments

#332 - Mainly fix input UI of drug analysis

Pull Request - State: closed - Opened by lishensuo 3 months ago

#331 - GENE SIGNATURE FORMULA

Issue - State: closed - Opened by Tardins 3 months ago - 7 comments
Labels: enhancement

#329 - How do we set cutoff_mode = "Auto" in `vis_unicox_tree` function

Issue - State: closed - Opened by quiquemedina 4 months ago - 9 comments
Labels: enhancement

#327 - fix pdf() parameter for KM plot

Pull Request - State: closed - Opened by lishensuo 6 months ago

#326 - Issues with Recent Update to QuickPanCan Analysis Functionalities

Issue - State: closed - Opened by quiquemedina 6 months ago - 7 comments
Labels: bug, enhancement

#325 - update TPC quick module

Pull Request - State: closed - Opened by lishensuo 6 months ago

#324 - Issue with Non-Numeric Arguments in Binary Operations in UCSCXenaShiny v2.0.0

Issue - State: closed - Opened by quiquemedina 6 months ago - 5 comments
Labels: bug

#323 - optimize

Issue - State: closed - Opened by ShixiangWang 6 months ago - 1 comment
Labels: enhancement

#322 - Update code related to profile plot

Pull Request - State: closed - Opened by mugpeng 6 months ago - 1 comment

#321 - 调整、优化TPC分析相关的UI

Pull Request - State: closed - Opened by lishensuo 6 months ago - 1 comment

#320 - update app.R and appdata preparation

Pull Request - State: closed - Opened by lishensuo 6 months ago

#318 - fix some bugs

Pull Request - State: closed - Opened by lishensuo 6 months ago - 1 comment

#317 - Set group.var from string failed?

Issue - State: closed - Opened by ShixiangWang 6 months ago - 2 comments

#315 - adjust some UI

Pull Request - State: closed - Opened by lishensuo 7 months ago

#314 - Peng dev 0307_update_Peng

Pull Request - State: closed - Opened by mugpeng 7 months ago - 1 comment

#313 - adjust multiple ID upload and survival analysis

Pull Request - State: closed - Opened by lishensuo 7 months ago

#312 - update0301

Pull Request - State: closed - Opened by lishensuo 7 months ago

#311 - fix general analysis bugs

Pull Request - State: closed - Opened by lishensuo 7 months ago

#310 - add daily-gene module

Pull Request - State: closed - Opened by lishensuo 7 months ago

#309 - Unable to perform CNA vs. gene expression analysis in TCGA pan-cancer

Issue - State: closed - Opened by xiw588 8 months ago - 2 comments

#308 - details adjustment

Pull Request - State: closed - Opened by lishensuo 8 months ago

#307 - adjust the quick modules and homepage

Pull Request - State: closed - Opened by lishensuo 8 months ago

#306 - add shiny visualize params & update NEWS.md

Pull Request - State: closed - Opened by lishensuo 8 months ago

#305 - fig a bug when grouping sample

Pull Request - State: closed - Opened by lishensuo 8 months ago

#304 - PharmacoGenomics_0123

Pull Request - State: closed - Opened by mugpeng 8 months ago - 5 comments

#303 - PharmacoGenomics_0123

Pull Request - State: closed - Opened by mugpeng 8 months ago

#302 - homepage adjustment

Pull Request - State: closed - Opened by lishensuo 9 months ago

#301 - Update Dockerfile

Pull Request - State: closed - Opened by ShixiangWang 9 months ago

#300 - fix fug of download module

Pull Request - State: closed - Opened by lishensuo 9 months ago

#299 - Update App.R

Pull Request - State: closed - Opened by lishensuo 9 months ago

#298 - TCGA/PCAWG/CCLE layout optimization

Pull Request - State: closed - Opened by lishensuo 9 months ago

#297 - Update deploy.R

Pull Request - State: closed - Opened by lishensuo 9 months ago

#296 - Control modules and fix bugs

Pull Request - State: closed - Opened by lishensuo 9 months ago

#295 - add analysis report function

Pull Request - State: closed - Opened by lishensuo 9 months ago

#294 - 部署更新

Issue - State: closed - Opened by ShixiangWang 9 months ago - 5 comments
Labels: plan, todo

#293 - Error in <reactive>: object '.opt_pancan' not found

Issue - State: closed - Opened by Miachol 9 months ago - 4 comments

#292 - Update App.R

Pull Request - State: closed - Opened by lishensuo 9 months ago - 1 comment

#291 - mainly add download module

Pull Request - State: closed - Opened by lishensuo 9 months ago

#289 - 原始数据下载相关

Issue - State: closed - Opened by soleded 10 months ago - 1 comment

#288 - Discussion about new option

Issue - State: closed - Opened by ShixiangWang 10 months ago
Labels: help wanted

#287 - add opt_pancan widget to quick modules

Pull Request - State: closed - Opened by lishensuo 10 months ago

#285 - Request for R Code for TCGA Association Analysis Features in Xena hiplot

Issue - State: open - Opened by quiquemedina 10 months ago - 1 comment
Labels: enhancement

#284 - 输入栏切换

Issue - State: closed - Opened by ShixiangWang 10 months ago - 1 comment
Labels: enhancement

#283 - Recurrent Error with Composed Gene Symbols in Gene Signatures using XenaShiny

Issue - State: closed - Opened by quiquemedina 10 months ago - 4 comments
Labels: bug

#282 - add PCAWG and CCLE analysis modules

Pull Request - State: closed - Opened by lishensuo 10 months ago

#281 - TCGA analysis optimization

Pull Request - State: closed - Opened by lishensuo 10 months ago - 1 comment

#280 - fix a bug of last update

Pull Request - State: closed - Opened by lishensuo 11 months ago

#279 - Add TCGA batch analysis modules

Pull Request - State: closed - Opened by lishensuo 11 months ago - 3 comments

#277 - Update query_value.R

Pull Request - State: closed - Opened by lishensuo 11 months ago

#275 - Add shinyFeedback

Pull Request - State: closed - Opened by ShixiangWang 11 months ago

#274 - pancan analysis optimization

Pull Request - State: closed - Opened by lishensuo 11 months ago - 7 comments

#273 - General Analysis优化

Issue - State: closed - Opened by ShixiangWang 11 months ago - 1 comment
Labels: bug

#272 - add pan-survival module & adjust UI

Pull Request - State: closed - Opened by lishensuo 11 months ago

#271 - button layout

Issue - State: closed - Opened by ShixiangWang 12 months ago - 2 comments
Labels: enhancement

#270 - mainly add 2 pan-cancer modules for shiny app

Pull Request - State: closed - Opened by lishensuo 12 months ago - 1 comment

#269 - add query_tcga_group()

Pull Request - State: closed - Opened by lishensuo about 1 year ago - 1 comment

#268 - Custom query

Pull Request - State: closed - Opened by ShixiangWang about 1 year ago - 1 comment

#267 - SIGNATURES PROBLEMS FOR CCLE DATA

Issue - State: closed - Opened by Tardins about 1 year ago - 5 comments

#266 - enhance the data query and analysis of methylation data

Issue - State: closed - Opened by ShixiangWang about 1 year ago - 13 comments
Labels: enhancement

#265 - add DR analysis in GA module

Pull Request - State: closed - Opened by lishensuo about 1 year ago

#264 - Is https://shiny.hiplot.cn/ucsc-xena-shiny/ browser down?

Issue - State: closed - Opened by quiquemedina about 1 year ago - 4 comments

#263 - TCGA: Molecule -Molecule correlation - Gene methylation and mRNA metrics

Issue - State: closed - Opened by quiquemedina about 1 year ago - 13 comments
Labels: bug, enhancement, question

#262 - add mutation grouping comparison function and module

Pull Request - State: closed - Opened by lishensuo about 1 year ago - 1 comment

#261 - add R function and shiny module for pathway correlation analysis

Pull Request - State: closed - Opened by lishensuo about 1 year ago - 3 comments

#260 - add vis_dim_dist() funtion and corresponding shiny module

Pull Request - State: closed - Opened by lishensuo about 1 year ago - 1 comment

#258 - Is shiny.hiplot-academic.com down worldwide?

Issue - State: closed - Opened by quiquemedina over 1 year ago - 3 comments

#257 - Querying chromosome coordinates, like chr1:68044026-68054909

Issue - State: closed - Opened by quiquemedina over 1 year ago - 14 comments
Labels: enhancement, plan, todo, pan-cancer-analysis

#256 - ZENODO DATA PROBLEMS

Issue - State: closed - Opened by Tardins over 1 year ago - 4 comments

#253 - check issue

Issue - State: closed - Opened by ShixiangWang over 1 year ago