openPMD/openPMD-api issues and pull requests

#1670 - WIP: a particle only test case.

Pull Request - State: open - Opened by guj 11 days ago

#1669 - Allow numpy 2.0 in requirements.txt

Pull Request - State: closed - Opened by franzpoeschel 22 days ago
Labels: frontend: Python3

#1668 - CMake Superbuild: Tarball

Pull Request - State: closed - Opened by ax3l 25 days ago - 1 comment
Labels: install, third party, dependencies

#1667 - CMake Superbuild: Repo & Local Source

Pull Request - State: closed - Opened by ax3l 25 days ago
Labels: install, third party, dependencies

#1666 - Remove ThirdParty Directories

Pull Request - State: closed - Opened by ax3l 25 days ago
Labels: third party

#1665 - pip install from source fails due to internal compiler error with gcc 13.2.0 (only on x86-64)

Issue - State: open - Opened by BenWibking about 1 month ago - 1 comment
Labels: install

#1664 - Virtual Records (Variables)

Issue - State: open - Opened by ax3l about 1 month ago
Labels: backend: ADIOS2

#1663 - Constant Records for JoinedArrays: Skip `shape` for Particles

Issue - State: open - Opened by ax3l about 1 month ago - 1 comment
Labels: bug, backend: ADIOS2, frontend: C++17, frontend: Python3, internal

#1662 - Pickle API: Fix memory leak

Pull Request - State: closed - Opened by franzpoeschel about 2 months ago
Labels: bug, frontend: Python3

#1661 - Make shape an optional attribute for constant components

Pull Request - State: open - Opened by franzpoeschel about 2 months ago
Labels: discussion

#1660 - Independent writes: Make workaround more flexible

Pull Request - State: closed - Opened by franzpoeschel about 2 months ago - 3 comments
Labels: api: new, workaround

#1659 - Python Series/Iteration: Fix Length

Pull Request - State: closed - Opened by ax3l about 2 months ago - 3 comments
Labels: bug, affects latest release, frontend: Python3

#1658 - Python Object Comparison Support

Issue - State: open - Opened by ax3l about 2 months ago
Labels: frontend: Python3, feature request

#1657 - Fix used after free issue in SerialIOTests

Pull Request - State: closed - Opened by franzpoeschel 2 months ago
Labels: bug, tests

#1656 - setshape() should not touch the joined dim

Pull Request - State: open - Opened by guj 2 months ago - 2 comments
Labels: bug, backend: ADIOS2

#1655 - file based bp5 writer hang

Issue - State: open - Opened by guj 2 months ago - 3 comments
Labels: bug

#1654 - Pickle API: Cache unpickled Series to avoid repeated file access

Pull Request - State: open - Opened by franzpoeschel 2 months ago
Labels: frontend: Python3

#1653 - CI: macOS 11->12

Pull Request - State: closed - Opened by ax3l 2 months ago
Labels: continuous integration

#1652 - Opt-in support for unknown ADIOS2 engines

Pull Request - State: closed - Opened by franzpoeschel 2 months ago - 4 comments
Labels: backend: ADIOS2

#1651 - Fix Conda CI

Pull Request - State: closed - Opened by franzpoeschel 3 months ago
Labels: warning, continuous integration

#1650 - Parse lazily in linear access mode

Pull Request - State: closed - Opened by franzpoeschel 3 months ago - 1 comment
Labels: internal

#1649 - Add missing openPMD_HAVE_MPI guard to ParallelIOTest

Pull Request - State: closed - Opened by franzpoeschel 3 months ago
Labels: bug, tests

#1648 - Release notes: 0.16

Pull Request - State: open - Opened by franzpoeschel 3 months ago
Labels: documentation

#1647 - Combine multiple files into a single file

Issue - State: open - Opened by thmihnea 3 months ago - 2 comments
Labels: question

#1646 - Dataset-specific JSON/TOML configuration

Pull Request - State: open - Opened by franzpoeschel 3 months ago
Labels: api: new

#1645 - Compatibility with toml11 4.0

Pull Request - State: closed - Opened by franzpoeschel 3 months ago
Labels: third party, internal, backend: TOML

#1644 - HDF5 filters (compression)

Pull Request - State: open - Opened by franzpoeschel 3 months ago
Labels: backend: HDF5, api: new

#1643 - Fix wrong logging of TOUCH task

Pull Request - State: closed - Opened by franzpoeschel 3 months ago
Labels: bug, internal

#1642 - Performance: Flush IOHandler only once, not for each Iteration

Pull Request - State: closed - Opened by franzpoeschel 3 months ago - 6 comments
Labels: internal

#1641 - Add back iteration.close() call in openpmd-pipe script

Pull Request - State: closed - Opened by franzpoeschel 3 months ago - 1 comment
Labels: bug, tools, frontend: Python3

#1640 - Update Pybind to v2.12.0

Pull Request - State: closed - Opened by franzpoeschel 3 months ago - 2 comments
Labels: third party, frontend: Python3, internal

#1639 - Performance: Attribute reading in the HDF5 backend is implemented inefficiently

Issue - State: open - Opened by franzpoeschel 3 months ago
Labels: backend: HDF5

#1638 - ADIOS2: Override access mode

Pull Request - State: closed - Opened by franzpoeschel 3 months ago
Labels: backend: ADIOS2

#1637 - CI fixes and documentation for Pybind v2.12.0 and Numpy 2.0

Pull Request - State: closed - Opened by franzpoeschel 4 months ago
Labels: bug, continuous integration

#1636 - Wheels: Emscripten/wasm/Pyodide

Issue - State: open - Opened by ax3l 4 months ago - 1 comment
Labels: frontend: Python3, continuous integration

#1635 - Wheels: ARM64 (Linux/Windows)

Issue - State: open - Opened by ax3l 4 months ago
Labels: frontend: Python3, continuous deployment

#1634 - HDF5 independent flush config

Pull Request - State: closed - Opened by franzpoeschel 4 months ago
Labels: backend: HDF5, MPI

#1633 - Pickle API: Avoid static Series hack, allow multiple Series

Pull Request - State: closed - Opened by franzpoeschel 4 months ago - 3 comments
Labels: frontend: Python3

#1632 - Flush target newstep

Pull Request - State: closed - Opened by franzpoeschel 4 months ago - 1 comment
Labels: backend: ADIOS2

#1631 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 4 months ago

#1630 - Append mode: Option to not truncate files in file-based iteration encoding

Issue - State: closed - Opened by ax3l 4 months ago
Labels: backend: ADIOS2, api: new

#1629 - flush_target that ends/starts step

Issue - State: closed - Opened by ax3l 4 months ago
Labels: backend: ADIOS2, api: new

#1628 - Fix broken mpiexec in Conda CI

Pull Request - State: closed - Opened by franzpoeschel 4 months ago
Labels: bug, continuous integration

#1627 - Fix Python container and pickle API

Pull Request - State: closed - Opened by franzpoeschel 4 months ago
Labels: bug, frontend: Python3

#1626 - Fix particle patches flush api

Pull Request - State: closed - Opened by franzpoeschel 4 months ago
Labels: bug, cosmetic

#1624 - Regexes: Sanitize user input

Pull Request - State: closed - Opened by franzpoeschel 4 months ago
Labels: bug, affects latest release, internal

#1623 - loading particles from openpmd

Issue - State: closed - Opened by rl3418 4 months ago - 3 comments
Labels: question

#1622 - set SI units

Issue - State: open - Opened by rl3418 4 months ago - 5 comments
Labels: question

#1621 - Bump s-weigand/setup-conda from 1.2.1 to 1.2.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: continuous integration, dependencies

#1620 - Introduce more flexible storeChunk() syntax, use to add ADIOS2 memory selection

Pull Request - State: open - Opened by franzpoeschel 5 months ago
Labels: backend: ADIOS2, frontend: C++17, frontend: Python3, api: new

#1619 - Workaround for independent writes to Iterations in parallel, better detection of BP5 which in turn uncovers more instances of the first issue

Pull Request - State: closed - Opened by franzpoeschel 5 months ago
Labels: bug, affects latest release, MPI, internal, workaround

#1618 - Fix CI issues for ADIOS2 v2.10: Add openPMD_HAVE_ADIOS2_BP5, datatype fixes in Python bindings

Pull Request - State: closed - Opened by franzpoeschel 5 months ago
Labels: bug, backend: ADIOS2

#1616 - Parallel flushing cannot rely on dirty checks

Issue - State: closed - Opened by franzpoeschel 5 months ago
Labels: bug, api: breaking, MPI, api: new

#1615 - Span API: Set dirty flag

Pull Request - State: closed - Opened by franzpoeschel 5 months ago
Labels: bug, internal

#1614 - Add define for ADIOS2_HAVE_BP5

Pull Request - State: closed - Opened by franzpoeschel 5 months ago - 1 comment
Labels: bug, backend: ADIOS2

#1613 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 2 comments
Labels: tests, backend: ADIOS2, continuous integration

#1606 - Support Reopen of Closed Iterations

Issue - State: open - Opened by ax3l 6 months ago - 1 comment
Labels: internal, api: new, feature request

#1601 - ADIOS2 variable shape LocalValue

Pull Request - State: open - Opened by franzpoeschel 7 months ago
Labels: backend: ADIOS2

#1597 - CI: Spack v0.22.1

Pull Request - State: open - Opened by ax3l 7 months ago - 4 comments
Labels: continuous integration

#1592 - [WIP] Unify Random-Access API and Streaming API into Series::snapshots()

Pull Request - State: open - Opened by franzpoeschel 8 months ago
Labels: discussion, api: breaking, frontend: C++17, frontend: Python3, api: new

#1591 - HDF5: Explicit control over chunking

Pull Request - State: open - Opened by franzpoeschel 8 months ago
Labels: backend: HDF5

#1590 - Don't allow Container insertion in READ_LINEAR

Pull Request - State: open - Opened by franzpoeschel 9 months ago
Labels: bug, internal

#1589 - Writing particle weight data to h5

Issue - State: closed - Opened by kli-jfp 9 months ago - 2 comments
Labels: question

#1588 - Current best practice for block structured AMR

Issue - State: open - Opened by pgrete 9 months ago - 1 comment
Labels: question

#1587 - Fix Docstring for MyPath

Pull Request - State: closed - Opened by franzpoeschel 9 months ago
Labels: documentation, api: breaking, frontend: C++17

#1586 - Fix availableChunks for READ_LINEAR in ADIOS2

Pull Request - State: closed - Opened by franzpoeschel 9 months ago
Labels: bug, backend: ADIOS2

#1585 - Fix: Strings with a single char in Python

Pull Request - State: closed - Opened by franzpoeschel 9 months ago
Labels: bug, frontend: Python3

#1584 - Filename extensions: Allow specifying wildcards

Pull Request - State: open - Opened by franzpoeschel 9 months ago
Labels: frontend: C++17, frontend: Python3

#1583 - Replace internal dependencies by FetchContent

Pull Request - State: closed - Opened by DerNils-git 9 months ago - 12 comments
Labels: install

#1582 - Remove constexpr from RecordComponent::visit()

Pull Request - State: closed - Opened by franzpoeschel 9 months ago
Labels: bug, frontend: C++17

#1581 - Draft: attribute_writing_ranks in HDf5

Pull Request - State: closed - Opened by franzpoeschel 10 months ago - 1 comment
Labels: backend: HDF5, MPI

#1580 - Initial support for HDF5 subfiling

Pull Request - State: open - Opened by franzpoeschel 10 months ago
Labels: backend: HDF5

#1579 - how to rescale axis lengths to work around downstream bugs?

Issue - State: open - Opened by BenWibking 10 months ago - 10 comments
Labels: question

#1578 - Add documentation for typical use cases of openpmd-pipe

Pull Request - State: closed - Opened by franzpoeschel 10 months ago
Labels: tools, documentation

#1577 - Refactor: Extract ADIOS2 BufferedActions struct to own file, rename to ADIOS2File

Pull Request - State: closed - Opened by franzpoeschel 10 months ago
Labels: refactoring, backend: ADIOS2

#1576 - documentation: mention that ParaView (Windows) and VisIt (all platforms) can't read BP5 files

Issue - State: open - Opened by BenWibking 10 months ago - 5 comments
Labels: question

#1575 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago
Labels: continuous integration

#1574 - Update for OPENPMD_VERBOSE logging

Pull Request - State: closed - Opened by franzpoeschel 10 months ago
Labels: bug, warning, internal

#1573 - Partially revert #1368

Pull Request - State: closed - Opened by franzpoeschel 10 months ago
Labels: warning, internal, workaround

#1572 - no rendering using interactive openPMD-viewer

Issue - State: closed - Opened by BenWibking 10 months ago - 17 comments
Labels: question, backend: ADIOS2

#1570 - non-deterministic data values returned when reading from a BP5 file

Issue - State: closed - Opened by BenWibking 10 months ago - 4 comments
Labels: question, frontend: Python3

#1569 - Bump github/codeql-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: continuous integration, dependencies

#1567 - Paraview expects .pmd files, rather than .bp files?

Issue - State: closed - Opened by BenWibking 10 months ago - 1 comment
Labels: question

#1566 - Docs: Research Groups of Maintainers

Pull Request - State: closed - Opened by ax3l 10 months ago
Labels: documentation

#1565 - Workaround for current CI issues with clang14 on MacOS

Pull Request - State: closed - Opened by franzpoeschel 10 months ago - 1 comment
Labels: continuous integration, workaround

#1564 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago
Labels: continuous integration

#1563 - Query backend versions

Issue - State: open - Opened by franzpoeschel 10 months ago
Labels: help wanted, discussion, frontend: C++17, frontend: Python3, backend, feature request

#1562 - Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: continuous integration, dependencies

#1561 - Series: Open with Placeholder for File-Ending/Backend

Issue - State: open - Opened by ax3l 10 months ago - 1 comment
Labels: api: new

#1560 - Remove `FindADIOS.cmake`

Pull Request - State: closed - Opened by ax3l 11 months ago
Labels: backend: ADIOS1

#1559 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago
Labels: continuous integration

#1558 - Update cmake minimum required

Pull Request - State: closed - Opened by titoiride 11 months ago
Labels: install

#1557 - CMake 3.27.1 generates warning when using FetchContent

Issue - State: closed - Opened by titoiride 11 months ago
Labels: install

#1555 - Doc: HELPMI Support

Pull Request - State: closed - Opened by ax3l 11 months ago
Labels: documentation

#1554 - Wheels: ADIOS2 v2.10.1

Pull Request - State: open - Opened by ax3l 11 months ago - 14 comments
Labels: backend: ADIOS2, frontend: Python3, continuous deployment

#1553 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago
Labels: continuous integration

#1552 - Fix `unique_ptr<T, Del>` constructor of UniquePtrWithLambda

Pull Request - State: closed - Opened by franzpoeschel 11 months ago - 1 comment
Labels: bug, affects latest release, frontend: C++17

#1551 - [WIP] Add openPMD version 2.0 to supported API versions

Pull Request - State: open - Opened by franzpoeschel 11 months ago - 2 comments
Labels: discussion, api: new

#1549 - Doc: Python 3.12

Pull Request - State: closed - Opened by ax3l 11 months ago
Labels: documentation, frontend: Python3

#1548 - Scikit-Build

Pull Request - State: open - Opened by ax3l 11 months ago
Labels: install, frontend: Python3

GitHub / openPMD/openPMD-api issues and pull requests