Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / open-reaction-database/ord-schema issues and pull requests

#653 - Add new protobuf format for the new database

Pull Request - State: closed - Opened by FanwangM almost 2 years ago - 3 comments

#652 - Add draft for database cleaning

Pull Request - State: closed - Opened by FanwangM almost 2 years ago - 2 comments

#651 - Updates for ORM workflows

Pull Request - State: closed - Opened by skearnes almost 2 years ago - 2 comments

#650 - Psycopg2 dependency fails to compile in CI/CD

Issue - State: closed - Opened by d-miketa almost 2 years ago - 1 comment
Labels: bug

#649 - Improvements to fetch_dataset

Pull Request - State: closed - Opened by skearnes almost 2 years ago - 1 comment

#648 - ORM documentation

Pull Request - State: closed - Opened by skearnes almost 2 years ago - 1 comment

#647 - Add add_dataset.py and better logging

Pull Request - State: closed - Opened by skearnes about 2 years ago - 2 comments

#646 - Structure search

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#645 - Add with_polymorphic mappers for query construction

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#644 - Update advisory board

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#643 - ORM for proto <-> PostgreSQL

Pull Request - State: closed - Opened by skearnes about 2 years ago - 3 comments

#642 - Add ord_schema API docs

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#641 - Use python 3.9

Pull Request - State: closed - Opened by skearnes about 2 years ago - 2 comments

#640 - token

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#639 - use github cli to create the release

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#638 - Revert "create release as part of publish job"

Pull Request - State: closed - Opened by skearnes about 2 years ago - 1 comment

#637 - create release as part of publish job

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#636 - Install rdkit from pypi by default

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#635 - Update binder configuration

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#634 - update installation instructions

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#633 - install build

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#632 - Update publish.yml

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#631 - Include compiled proto wrappers

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#630 - Push to PyPI after every merge

Pull Request - State: closed - Opened by skearnes over 2 years ago - 5 comments

#629 - pip install ord-schema

Issue - State: closed - Opened by skearnes over 2 years ago
Labels: enhancement

#628 - Replace absl/absltest with docopt/pytest

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#627 - Add a RecordEvent for approximately when the reaction was run?

Issue - State: open - Opened by skearnes over 2 years ago
Labels: enhancement

#626 - Added requirements dependency to setup.py

Pull Request - State: closed - Opened by ipendlet over 2 years ago - 1 comment

#625 - Use black for code formatting

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#624 - Update advisory board membership

Pull Request - State: closed - Opened by connorcoley over 2 years ago - 1 comment

#623 - Fix binder build

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#622 - Problem with `mybinder` link

Issue - State: closed - Opened by FanwangM over 2 years ago - 6 comments
Labels: bug

#621 - fix safe_join

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#620 - Validation fails with latest RDKit version

Issue - State: closed - Opened by skearnes over 2 years ago - 1 comment
Labels: bug

#619 - updates for docs

Pull Request - State: closed - Opened by skearnes over 2 years ago - 1 comment

#618 - Updates for creating inputs/outputs from reaction SMILES

Pull Request - State: closed - Opened by skearnes almost 3 years ago - 1 comment

#617 - Some USPTO reactions have no inputs/outputs

Issue - State: closed - Opened by skearnes almost 3 years ago - 2 comments
Labels: enhancement

#616 - ML example is failing due to strange keras error

Issue - State: closed - Opened by skearnes almost 3 years ago - 3 comments
Labels: bug

#615 - migrate reaction landing pages to ord-interface

Pull Request - State: closed - Opened by skearnes almost 3 years ago - 1 comment

#614 - update GA

Pull Request - State: closed - Opened by skearnes almost 3 years ago - 1 comment

#613 - Reaction landing pages do not show workup.input (e.g., for ADDITION workup steps)

Issue - State: open - Opened by connorcoley almost 3 years ago
Labels: enhancement

#612 - Fixes for landing pages

Pull Request - State: closed - Opened by skearnes almost 3 years ago - 1 comment

#611 - Show dataset ID in reaction landing page breadcrumbs

Pull Request - State: closed - Opened by skearnes almost 3 years ago - 1 comment

#610 - Add unmeasured amounts to proto

Pull Request - State: closed - Opened by connorcoley about 3 years ago - 1 comment

#609 - Fix broken landing pages

Pull Request - State: closed - Opened by skearnes about 3 years ago - 1 comment

#608 - Update list_dois.py

Pull Request - State: closed - Opened by skearnes about 3 years ago - 2 comments

#607 - Add optical rotation as an analysis type

Issue - State: closed - Opened by brilee about 3 years ago - 1 comment
Labels: enhancement

#606 - In auto-generated DOI list, show dataset description

Issue - State: closed - Opened by connorcoley about 3 years ago - 7 comments
Labels: enhancement

#605 - Improve definition of "amounts" for saturated solutions

Issue - State: closed - Opened by connorcoley about 3 years ago - 2 comments
Labels: enhancement

#604 - Orgsyn example update

Pull Request - State: closed - Opened by connorcoley about 3 years ago - 1 comment

#603 - Fix a bug in ID reference replacements

Pull Request - State: closed - Opened by skearnes over 3 years ago - 1 comment

#602 - Dataset processing raises a key error

Issue - State: closed - Opened by skearnes over 3 years ago
Labels: bug

#601 - Add install_requires to setup.py

Pull Request - State: closed - Opened by marcosfelt over 3 years ago - 5 comments

#600 - Setup.py is missing install_requires

Issue - State: closed - Opened by marcosfelt over 3 years ago - 2 comments
Labels: bug

#599 - Macros for creating solutions and workups

Pull Request - State: closed - Opened by brilee over 3 years ago - 8 comments

#598 - Create macros for solutions and workups

Pull Request - State: closed - Opened by brilee over 3 years ago

#597 - Error in reaction landing page generation

Issue - State: closed - Opened by skearnes over 3 years ago - 1 comment
Labels: bug

#596 - Steve Google->Relay

Pull Request - State: closed - Opened by skearnes over 3 years ago - 1 comment

#595 - Update proto (textures, well plate locations)

Pull Request - State: closed - Opened by connorcoley over 3 years ago - 1 comment

#594 - Missing dependency in example_requirements.txt

Issue - State: closed - Opened by DocMinus over 3 years ago - 2 comments
Labels: enhancement

#593 - Add LIQUID and SOLID texture types

Issue - State: closed - Opened by connorcoley over 3 years ago
Labels: enhancement

#592 - Update message_helpers.py

Pull Request - State: closed - Opened by skearnes over 3 years ago - 1 comment

#591 - Updates to the reaction landing page

Pull Request - State: closed - Opened by skearnes over 3 years ago - 3 comments

#590 - Updates for reaction landing pages

Pull Request - State: closed - Opened by skearnes over 3 years ago - 1 comment

#589 - Add plate/well identifiers

Issue - State: closed - Opened by skearnes over 3 years ago
Labels: enhancement

#588 - Add reaction.html template to setup.py

Pull Request - State: closed - Opened by skearnes over 3 years ago - 1 comment

#587 - Improvements to reaction rendering

Issue - State: open - Opened by skearnes over 3 years ago
Labels: enhancement

#586 - Look at adapter/integration with EnzymeML

Issue - State: closed - Opened by connorcoley over 3 years ago - 1 comment
Labels: enhancement

#585 - Reaction landing page

Pull Request - State: closed - Opened by skearnes over 3 years ago - 2 comments

#584 - Relaxing workup validations

Pull Request - State: closed - Opened by connorcoley over 3 years ago - 1 comment

#578 - Example dataset usage in downstream machine learning modeling

Pull Request - State: closed - Opened by michaelmaser over 3 years ago - 2 comments

#528 - Create a template/checklist for reviewers

Issue - State: open - Opened by skearnes over 3 years ago - 2 comments
Labels: enhancement

#524 - Support the definition of active species/complexes?

Issue - State: open - Opened by connorcoley almost 4 years ago - 2 comments
Labels: enhancement

#503 - Expand workup validations

Issue - State: closed - Opened by connorcoley almost 4 years ago - 1 comment
Labels: enhancement

#397 - Create a base image for faster docker building/testing

Pull Request - State: closed - Opened by skearnes almost 4 years ago - 2 comments

#358 - Use decimal points to distinguish between int and float values

Pull Request - State: closed - Opened by skearnes about 4 years ago - 2 comments

#171 - Update text generation to reflect updated schema and new enum options

Issue - State: closed - Opened by connorcoley over 4 years ago - 1 comment
Labels: enhancement

#171 - Update text generation to reflect updated schema and new enum options

Issue - State: closed - Opened by connorcoley over 4 years ago - 1 comment
Labels: enhancement

#51 - Progress toward analysis Methods and Data

Pull Request - State: closed - Opened by connorcoley over 4 years ago - 3 comments

#51 - Progress toward analysis Methods and Data

Pull Request - State: closed - Opened by connorcoley over 4 years ago - 3 comments

#48 - Create Messages for common analytical data

Issue - State: open - Opened by connorcoley over 4 years ago - 1 comment
Labels: enhancement