Ecosyste.ms: Issues

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GitHub / omicidx/omicidx-builder issues and pull requests

#28 - Bump oauthlib from 3.1.1 to 3.2.2

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#27 - Bump certifi from 2021.5.30 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#26 - Bump notebook from 6.4.3 to 6.4.12

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#25 - Bump nbconvert from 6.1.0 to 6.5.1

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#24 - Bump mkdocs from 1.2.2 to 1.2.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#23 - Bump oauthlib from 3.1.1 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#22 - Bump protobuf from 3.11.2 to 3.18.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#21 - Bump urllib3 from 1.25.7 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#20 - Bump protobuf from 3.11.2 to 3.15.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#19 - abc

Issue - State: open - Opened by seandavi over 4 years ago
Labels: Epic

#18 - Update README.

Issue - State: open - Opened by seandavi over 4 years ago
Labels: documentation, enhancement

#17 - Update elasticsearch template for study fields

Issue - State: closed - Opened by seandavi almost 5 years ago
Labels: bug

#16 - Add biosample logging and convert to output to file

Issue - State: closed - Opened by seandavi almost 5 years ago
Labels: enhancement

#15 - Create DOCKERFILE and container

Issue - State: closed - Opened by seandavi almost 5 years ago

#14 - Migrate geo_pubsub repo here

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: enhancement

#13 - Include default date types in date mappings

Issue - State: closed - Opened by seandavi almost 5 years ago - 1 comment
Labels: bug

#12 - implement clean elasticsearch template mappings

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: enhancement

#11 - Delete json dump area before performing new dumps

Issue - State: closed - Opened by seandavi almost 5 years ago
Labels: bug

#10 - Supply new template for biosample elasticsearch

Issue - State: closed - Opened by seandavi almost 5 years ago - 1 comment
Labels: bug

#9 - Refactor to use omicidx_builder.elasticsearch_utils

Issue - State: closed - Opened by seandavi almost 5 years ago - 1 comment
Labels: enhancement

#8 - Create test for downloading biosample file

Issue - State: closed - Opened by seandavi almost 5 years ago

#7 - migrate bigquery schemas from omicidx to omicidx_builder

Issue - State: closed - Opened by seandavi almost 5 years ago - 1 comment
Labels: enhancement

#6 - Remind users that samples can belong to more than one study

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: documentation, enhancement

#5 - Create "pipeline" command line option for building biosample

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: enhancement

#4 - Create "pipeline" command line option for building SRA

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: enhancement

#3 - create config file format and corresponding config parser

Issue - State: closed - Opened by seandavi almost 5 years ago

#2 - parameterize bigquery dataset settings from env variables (or .env file)

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: enhancement

#1 - parameterize cloud storage locations from env variables (or .env file)

Issue - State: open - Opened by seandavi almost 5 years ago
Labels: enhancement