Ecosyste.ms: Issues
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GitHub / omicidx/omicidx-builder issues and pull requests
#28 - Bump oauthlib from 3.1.1 to 3.2.2
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#27 - Bump certifi from 2021.5.30 to 2022.12.7
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#26 - Bump notebook from 6.4.3 to 6.4.12
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#25 - Bump nbconvert from 6.1.0 to 6.5.1
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#24 - Bump mkdocs from 1.2.2 to 1.2.3
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#23 - Bump oauthlib from 3.1.1 to 3.2.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#22 - Bump protobuf from 3.11.2 to 3.18.3
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#21 - Bump urllib3 from 1.25.7 to 1.26.5
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#20 - Bump protobuf from 3.11.2 to 3.15.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#18 - Update README.
Issue -
State: open - Opened by seandavi over 4 years ago
Labels: documentation, enhancement
#17 - Update elasticsearch template for study fields
Issue -
State: closed - Opened by seandavi almost 5 years ago
Labels: bug
#16 - Add biosample logging and convert to output to file
Issue -
State: closed - Opened by seandavi almost 5 years ago
Labels: enhancement
#15 - Create DOCKERFILE and container
Issue -
State: closed - Opened by seandavi almost 5 years ago
#14 - Migrate geo_pubsub repo here
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: enhancement
#13 - Include default date types in date mappings
Issue -
State: closed - Opened by seandavi almost 5 years ago
- 1 comment
Labels: bug
#12 - implement clean elasticsearch template mappings
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: enhancement
#11 - Delete json dump area before performing new dumps
Issue -
State: closed - Opened by seandavi almost 5 years ago
Labels: bug
#10 - Supply new template for biosample elasticsearch
Issue -
State: closed - Opened by seandavi almost 5 years ago
- 1 comment
Labels: bug
#9 - Refactor to use omicidx_builder.elasticsearch_utils
Issue -
State: closed - Opened by seandavi almost 5 years ago
- 1 comment
Labels: enhancement
#8 - Create test for downloading biosample file
Issue -
State: closed - Opened by seandavi almost 5 years ago
#7 - migrate bigquery schemas from omicidx to omicidx_builder
Issue -
State: closed - Opened by seandavi almost 5 years ago
- 1 comment
Labels: enhancement
#6 - Remind users that samples can belong to more than one study
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: documentation, enhancement
#5 - Create "pipeline" command line option for building biosample
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: enhancement
#4 - Create "pipeline" command line option for building SRA
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: enhancement
#3 - create config file format and corresponding config parser
Issue -
State: closed - Opened by seandavi almost 5 years ago
#2 - parameterize bigquery dataset settings from env variables (or .env file)
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: enhancement
#1 - parameterize cloud storage locations from env variables (or .env file)
Issue -
State: open - Opened by seandavi almost 5 years ago
Labels: enhancement