ome/training-scripts issues and pull requests

#93 - Channel minmax to table fixes

Pull Request - State: open - Opened by will-moore over 1 year ago - 2 comments

#92 - idr_copy_plate.py fails on multiple Fields

Issue - State: open - Opened by pwalczysko about 2 years ago

#91 - Fix help text of delete_ann

Pull Request - State: open - Opened by pwalczysko about 2 years ago - 2 comments

#90 - Fix formulation in the script comment

Pull Request - State: closed - Opened by pwalczysko about 2 years ago - 2 comments

#89 - Fix parade prep notes

Pull Request - State: open - Opened by will-moore over 3 years ago - 14 comments

#88 - ome 2021 workshop

Pull Request - State: closed - Opened by will-moore almost 4 years ago - 6 comments

#87 - info about migration

Pull Request - State: closed - Opened by jburel about 4 years ago - 5 comments

#86 - frap figure script py3

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 11 comments

#85 - get_map_anns spw

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 17 comments

#84 - Fixes save table

Pull Request - State: closed - Opened by jburel almost 5 years ago - 2 comments

#83 - Fix fiji script

Pull Request - State: closed - Opened by dominikl almost 5 years ago - 1 comment

#82 - Idr0021.groovy headers no whitespace

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 1 comment

#81 - Use numbers for Map-Ann values

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 1 comment

#80 - attach file

Pull Request - State: closed - Opened by jburel about 5 years ago - 3 comments

#79 - import script

Pull Request - State: closed - Opened by jburel about 5 years ago - 1 comment

#78 - groovy script credentials

Pull Request - State: closed - Opened by jburel about 5 years ago - 3 comments

#77 - Thresholding

Pull Request - State: open - Opened by dominikl about 5 years ago

#76 - Ilastik

Pull Request - State: closed - Opened by jburel about 5 years ago - 18 comments

#75 - Bin omero

Pull Request - State: closed - Opened by jburel about 5 years ago - 5 comments

#74 - Py3 prep

Pull Request - State: closed - Opened by jburel over 5 years ago - 3 comments

#73 - Add macro example

Pull Request - State: closed - Opened by pwalczysko over 5 years ago - 1 comment

#72 - Set matplotlib backend to 'Agg'

Pull Request - State: closed - Opened by dominikl over 5 years ago - 1 comment

#71 - Add example to run Fiji server

Issue - State: closed - Opened by jburel over 5 years ago - 1 comment

#70 - ilastik script

Issue - State: open - Opened by jburel over 5 years ago

#69 - import local file

Pull Request - State: closed - Opened by jburel over 5 years ago - 5 comments

#68 - Segment specific image (not a random one)

Pull Request - State: closed - Opened by dominikl almost 6 years ago - 1 comment

#67 - Add commands for omero-downloader

Pull Request - State: closed - Opened by pwalczysko almost 6 years ago - 5 comments

#66 - Break up the idr0021 analysis into single steps

Pull Request - State: closed - Opened by dominikl almost 6 years ago - 4 comments

#65 - Groovy: script with macro already uploaded

Issue - State: open - Opened by jburel almost 6 years ago

#64 - Groovy: fiji macro

Issue - State: open - Opened by jburel almost 6 years ago

#63 - Script param

Pull Request - State: open - Opened by evenhuis almost 6 years ago - 4 comments

#62 - Hello world

Pull Request - State: closed - Opened by jburel almost 6 years ago - 3 comments

#61 - Add import-paths as csv and a simple bulk.yml for training

Pull Request - State: closed - Opened by pwalczysko almost 6 years ago - 1 comment

#60 - use stringbuilder

Pull Request - State: closed - Opened by jburel almost 6 years ago

#59 - Exercises

Pull Request - State: closed - Opened by jburel almost 6 years ago - 7 comments

#58 - Delete rnd

Pull Request - State: open - Opened by pwalczysko almost 6 years ago - 15 comments

#57 - Forty to fifty

Pull Request - State: closed - Opened by pwalczysko about 6 years ago - 3 comments

#56 - idr0021 R preparation notebook

Pull Request - State: closed - Opened by dominikl about 6 years ago - 2 comments

#55 - idr0021 import for all workflow

Pull Request - State: closed - Opened by pwalczysko about 6 years ago - 9 comments

#54 - Python 3 support

Pull Request - State: closed - Opened by jburel about 6 years ago

#53 - Add a script to delete file attachments and ROIs

Pull Request - State: closed - Opened by dominikl about 6 years ago - 1 comment

#52 - Add 10 more scientists names to cater for 50 users

Pull Request - State: closed - Opened by pwalczysko over 6 years ago - 1 comment

#51 - Check if target dataset exists before creating one

Pull Request - State: open - Opened by dominikl over 6 years ago - 7 comments

#50 - Remove white

Pull Request - State: closed - Opened by jburel over 6 years ago - 3 comments

#49 - idr21

Pull Request - State: closed - Opened by jburel over 6 years ago - 9 comments

#48 - Analyse particles

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#47 - Analyse for another user

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#46 - Add "white" attribute

Pull Request - State: closed - Opened by jburel over 6 years ago - 12 comments

#45 - Add new renaming file for japanese audience

Pull Request - State: closed - Opened by pwalczysko over 6 years ago - 3 comments

#44 - Add points

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#43 - Maintenance Neubias

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#42 - fix split view figure console script

Pull Request - State: closed - Opened by will-moore over 6 years ago - 1 comment

#41 - matlab example

Pull Request - State: closed - Opened by jburel over 6 years ago - 28 comments

#40 - Gbi prep

Pull Request - State: closed - Opened by jburel over 6 years ago - 3 comments

#39 - Missing dependency

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#38 - Changelog 0.3.0

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#37 - Kymograph scripts from scripts PR #142

Pull Request - State: closed - Opened by will-moore over 6 years ago - 1 comment

#36 - Update doc

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#35 - Bash example CLI

Pull Request - State: closed - Opened by jburel over 6 years ago - 3 comments

#34 - Open image

Pull Request - State: closed - Opened by jburel over 6 years ago - 4 comments

#33 - Trackmate

Pull Request - State: closed - Opened by jburel over 6 years ago - 12 comments

#32 - Frap script create figure

Pull Request - State: closed - Opened by will-moore over 6 years ago - 12 comments

#31 - Split scripts

Pull Request - State: closed - Opened by jburel over 6 years ago - 16 comments

#30 - Idr0021

Pull Request - State: closed - Opened by jburel over 6 years ago - 26 comments

#29 - Jython fix

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#28 - Convert scripts into Groovy

Pull Request - State: closed - Opened by jburel over 6 years ago - 4 comments

#27 - batch_roi_export creates CSV

Pull Request - State: closed - Opened by will-moore over 6 years ago - 2 comments

#26 - rename users

Pull Request - State: closed - Opened by will-moore over 6 years ago - 4 comments

#25 - Export as CSV

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#24 - Special annotations delete

Pull Request - State: closed - Opened by pwalczysko over 6 years ago - 2 comments

#23 - New copy_tags_ratings.py script

Pull Request - State: closed - Opened by will-moore over 6 years ago - 4 comments

#22 - cleanup notes to check before workshop

Pull Request - State: closed - Opened by will-moore over 6 years ago - 4 comments

#21 - New script idr_copy_plate.py

Pull Request - State: closed - Opened by will-moore over 6 years ago - 4 comments

#20 - New segmentation.groovy script for Orbit

Pull Request - State: closed - Opened by will-moore over 6 years ago - 13 comments

#19 - create_groups_users (for ELMI)

Pull Request - State: closed - Opened by pwalczysko over 6 years ago - 5 comments

#18 - Add entry for 0.1.0

Pull Request - State: closed - Opened by jburel over 6 years ago

#17 - Add plate import and script to sample prep

Pull Request - State: closed - Opened by will-moore over 6 years ago - 1 comment

#16 - Example script

Pull Request - State: closed - Opened by jburel over 6 years ago - 24 comments

#15 - Ch intensities to table and shape.the c

Pull Request - State: closed - Opened by will-moore over 6 years ago - 14 comments

#14 - in-place command

Pull Request - State: closed - Opened by jburel over 6 years ago - 1 comment

#13 - Add data prep for import workshop

Pull Request - State: closed - Opened by pwalczysko over 6 years ago - 6 comments

#12 - Close connection

Pull Request - State: closed - Opened by jburel almost 7 years ago - 4 comments

#11 - Batch script render

Pull Request - State: closed - Opened by jburel almost 7 years ago - 3 comments

#10 - Re-organize

Pull Request - State: closed - Opened by jburel almost 7 years ago

#9 - Analyse idr0021 users meeting 2018

Pull Request - State: closed - Opened by will-moore almost 7 years ago - 12 comments

#8 - User meeting scripts

Pull Request - State: closed - Opened by jburel almost 7 years ago - 4 comments

#7 - create users

Issue - State: closed - Opened by jburel almost 7 years ago - 1 comment

#6 - Fix header

Pull Request - State: closed - Opened by jburel almost 7 years ago - 4 comments

#5 - Maintenance scripts improvement

Issue - State: closed - Opened by jburel almost 7 years ago - 1 comment

#4 - maintenance: Initial commit

Pull Request - State: closed - Opened by jburel almost 7 years ago - 22 comments

#3 - Clean up

Pull Request - State: closed - Opened by jburel almost 7 years ago

#2 - Variation of the analyse script

Pull Request - State: closed - Opened by jburel almost 7 years ago - 6 comments

#1 - Initial commit

Pull Request - State: closed - Opened by jburel almost 7 years ago - 2 comments

GitHub / ome/training-scripts issues and pull requests