ome/omero-scripts issues and pull requests

#224 - Import_from_csv script : PlateAcquisition parent added as KVPs

Issue - State: open - Opened by Rdornier 11 days ago

#223 - don't attempt ROI stats on big images

Pull Request - State: open - Opened by will-moore 5 months ago - 2 comments

#222 - Question: feasibility of Black-formatting the code in this repo?

Issue - State: open - Opened by ehrenfeu 8 months ago - 9 comments

#221 - Fix regression introduced in 6923640

Pull Request - State: closed - Opened by ehrenfeu 8 months ago

#220 - use build

Pull Request - State: closed - Opened by jburel 10 months ago

#219 - import math package directly

Pull Request - State: closed - Opened by jburel 10 months ago

#218 - Kymograph.py numpy.math depreciation warning

Issue - State: closed - Opened by Tom-TBT 10 months ago - 1 comment

#217 - Future removal

Pull Request - State: closed - Opened by jburel 12 months ago - 1 comment

#216 - Key-value pair scripts enhancement

Pull Request - State: closed - Opened by Tom-TBT about 1 year ago - 39 comments

#215 - AttributeError: 'FreeTypeFont' object has no attribute 'getsize'

Issue - State: closed - Opened by will-moore about 1 year ago - 2 comments

#214 - Update

Pull Request - State: closed - Opened by jburel about 1 year ago - 2 comments

#213 - Keyval from CSV support choice of Value separator

Issue - State: open - Opened by will-moore about 1 year ago - 2 comments

#212 - add entry for Jens

Pull Request - State: closed - Opened by jburel over 1 year ago

#211 - Solution for delimiter reading issue (#210) utilizing dynamic checkpoints

Pull Request - State: closed - Opened by JensWendt over 1 year ago - 11 comments

#210 - Improved delimiter sniffing for .csv files

Issue - State: open - Opened by JensWendt over 1 year ago - 5 comments

#209 - Use script on other shapes

Issue - State: open - Opened by lguerard over 1 year ago - 3 comments

#208 - Add top-level Git mailmap to normalize commit author variants

Pull Request - State: closed - Opened by sbesson over 1 year ago

#207 - Error while exporting ROI

Issue - State: open - Opened by Mohammedhusen almost 2 years ago - 1 comment

#206 - Adding a script that saves data owner as key-value pair

Pull Request - State: closed - Opened by Rdornier about 2 years ago - 4 comments

#205 - Add init.py files, use find

Pull Request - State: closed - Opened by pwalczysko about 2 years ago - 5 comments

#204 - Include annotation_scripts in setup.py

Pull Request - State: closed - Opened by pwalczysko about 2 years ago - 5 comments

#203 - Fixed error message output for Batch_Image_Export

Pull Request - State: closed - Opened by muhanadz over 2 years ago - 3 comments

#202 - Add Plate support to KeyVal_to_csv.py

Pull Request - State: open - Opened by will-moore over 2 years ago - 2 comments

#201 - Add new script Compare_Ome_Xml.py

Pull Request - State: closed - Opened by will-moore almost 3 years ago - 1 comment

#200 - Hcs keyvals from csv, improve delimiter sniffing

Pull Request - State: closed - Opened by abhamacher almost 3 years ago - 1 comment

#199 - Add HCS support to Remove_KeyVal.py

Pull Request - State: closed - Opened by will-moore almost 3 years ago - 8 comments

#198 - Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py

Pull Request - State: open - Opened by JulianHn almost 3 years ago - 16 comments

#197 - CODEOWNERS for annotation_scripts

Pull Request - State: closed - Opened by joshmoore about 3 years ago - 2 comments

#196 - Images from ROIs track xy

Pull Request - State: closed - Opened by will-moore about 3 years ago - 8 comments

#195 - Hcs keyvals from csv

Pull Request - State: closed - Opened by will-moore about 3 years ago - 11 comments

#194 - RemoveKeyVal - should delete key-value annotations and support HCS plates

Issue - State: open - Opened by will-moore about 3 years ago

#193 - ometa (squashed history)

Pull Request - State: closed - Opened by joshmoore about 3 years ago - 2 comments

#192 - ometa with history

Pull Request - State: closed - Opened by joshmoore about 3 years ago - 7 comments

#191 - WIP: Add scripts for bulk annotation

Pull Request - State: closed - Opened by CFGrote about 3 years ago - 6 comments

#190 - populate metadata - remove try/except

Pull Request - State: closed - Opened by will-moore about 3 years ago - 1 comment

#189 - populate metadata error handling

Issue - State: closed - Opened by will-moore about 3 years ago

#188 - python3 fixes to Images_From_ROIs.py

Pull Request - State: closed - Opened by will-moore over 3 years ago - 7 comments

#187 - Rtd

Pull Request - State: closed - Opened by jburel almost 4 years ago - 5 comments

#186 - Make_Movie overlay ROIs

Issue - State: open - Opened by will-moore almost 4 years ago - 1 comment

#185 - Investigate use of Shapely for exporting Points coordinates

Issue - State: open - Opened by will-moore almost 4 years ago

#184 - Populate metadata Image dtype

Pull Request - State: closed - Opened by will-moore almost 4 years ago - 4 comments

#183 - Docs on readthedocs

Pull Request - State: closed - Opened by jburel almost 4 years ago - 6 comments

#182 - Plot Profile Ignore zero length lines

Pull Request - State: closed - Opened by will-moore almost 4 years ago - 2 comments

#181 - Populate metadata on SPW

Issue - State: closed - Opened by pwalczysko about 4 years ago - 1 comment

#180 - bom fix populate metadata

Pull Request - State: closed - Opened by will-moore about 4 years ago - 10 comments

#179 - Populate metadata and BOM

Issue - State: closed - Opened by pwalczysko about 4 years ago - 7 comments

#178 - Replace mencoder with imageio-ffmpeg

Issue - State: open - Opened by manics about 4 years ago

#177 - Make_Movie choose labels positions

Issue - State: open - Opened by will-moore about 4 years ago - 1 comment

#176 - readthedocs build with autodoc

Pull Request - State: closed - Opened by will-moore over 4 years ago - 9 comments

#175 - Add Include_Points_Coords param to Batch_ROI_Export

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 1 comment

#174 - Batch_Image_Export supports SPW + Project

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 11 comments

#173 - ROI export with Well ID

Pull Request - State: closed - Opened by will-moore almost 5 years ago - 13 comments

#172 - RFE: Batch ROI export

Issue - State: open - Opened by jburel almost 5 years ago - 1 comment
Labels: enhancement

#171 - Update url in populate metadata description

Pull Request - State: closed - Opened by will-moore almost 5 years ago

#170 - ROI export handle points whitespace

Pull Request - State: closed - Opened by will-moore about 5 years ago - 6 comments

#169 - RFE: change default branch to master

Issue - State: open - Opened by mtbc about 5 years ago - 2 comments
Labels: enhancement

#168 - export roi: values rounding

Issue - State: open - Opened by jburel about 5 years ago
Labels: bug

#167 - export roi: unit display

Issue - State: open - Opened by jburel about 5 years ago
Labels: bug

#166 - Py3

Pull Request - State: closed - Opened by jburel about 5 years ago - 1 comment

#165 - batch ROI export CSV unicode

Pull Request - State: closed - Opened by will-moore about 5 years ago - 6 comments

#164 - Add infrastructure for releasing omero-scripts to PyPI

Pull Request - State: closed - Opened by sbesson about 5 years ago - 2 comments

#163 - Fix omero-scripts packaging

Pull Request - State: closed - Opened by sbesson about 5 years ago - 3 comments

#162 - split view figure z-projection with one z returns an error

Issue - State: open - Opened by manics about 5 years ago
Labels: bug

#161 - Movie ROI figure errors on py3

Issue - State: closed - Opened by pwalczysko about 5 years ago - 5 comments

#160 - Try omero_ext.path first

Pull Request - State: closed - Opened by joshmoore about 5 years ago

#159 - Fix webclient_figure scripts

Pull Request - State: closed - Opened by will-moore about 5 years ago - 21 comments

#158 - py3 issues

Issue - State: closed - Opened by will-moore about 5 years ago - 2 comments

#157 - py3 fixes

Pull Request - State: closed - Opened by will-moore over 5 years ago - 2 comments

#156 - Batch export ROIs from screen

Pull Request - State: closed - Opened by will-moore over 5 years ago - 3 comments

#155 - py3 update

Pull Request - State: closed - Opened by jburel over 5 years ago - 4 comments

#154 - Migrate testParseAllOfficialScripts here

Pull Request - State: closed - Opened by joshmoore over 5 years ago - 1 comment

#153 - Set proper version in setup.py

Pull Request - State: closed - Opened by joshmoore over 5 years ago - 1 comment

#152 - populate metadata links file ann

Pull Request - State: closed - Opened by will-moore over 5 years ago - 18 comments

#151 - Populate_Metadata: add support for bulkmap context

Issue - State: open - Opened by sbesson over 5 years ago
Labels: enhancement

#150 - Script to delete annotations

Pull Request - State: closed - Opened by dominikl over 5 years ago - 6 comments

#149 - Fix flake8

Pull Request - State: closed - Opened by joshmoore over 5 years ago - 2 comments

#148 - Populate metadata Datasets and Projects

Pull Request - State: closed - Opened by manics over 5 years ago - 21 comments

#147 - batch export ROI coordinates

Pull Request - State: closed - Opened by will-moore almost 6 years ago - 13 comments

#146 - Add 'Images_Per_Well' support to Dataset_To_Plate

Pull Request - State: closed - Opened by will-moore almost 6 years ago - 5 comments

#145 - Fix N816 warnings reported by Travis Ci

Pull Request - State: closed - Opened by sbesson almost 6 years ago

#144 - Python 3 support

Pull Request - State: closed - Opened by jburel about 6 years ago

#143 - Combine Images setPlane

Pull Request - State: closed - Opened by will-moore over 6 years ago - 4 comments

#142 - Kymograph points string float

Pull Request - State: closed - Opened by will-moore over 6 years ago - 34 comments

#141 - flake8 issue

Pull Request - State: closed - Opened by jburel almost 7 years ago - 1 comment

#140 - Infra

Pull Request - State: closed - Opened by jburel about 7 years ago - 1 comment

#139 - batch export ROIs

Pull Request - State: closed - Opened by will-moore about 7 years ago - 47 comments

#138 - Fix url

Pull Request - State: closed - Opened by jburel about 7 years ago - 1 comment

#137 - images from ROIs all ZT planes

Pull Request - State: closed - Opened by will-moore about 7 years ago - 23 comments

#136 - Test in travis

Pull Request - State: closed - Opened by jburel over 7 years ago - 4 comments

#135 - label_rotate_fix

Pull Request - State: closed - Opened by will-moore over 7 years ago - 2 comments

#134 - Move_Annotations

Pull Request - State: closed - Opened by will-moore almost 8 years ago - 24 comments

#133 - flake8 issue

Pull Request - State: closed - Opened by jburel almost 8 years ago

#132 - new methods from scripts utils

Pull Request - State: closed - Opened by jburel almost 8 years ago - 4 comments

#131 - Image utils

Pull Request - State: closed - Opened by jburel almost 8 years ago - 1 comment

#130 - Remove common methods

Pull Request - State: closed - Opened by jburel almost 8 years ago - 2 comments

#129 - IDR: Remove all scripts

Pull Request - State: closed - Opened by joshmoore about 8 years ago - 5 comments

#128 - Flake8 cleanup

Pull Request - State: closed - Opened by jburel about 8 years ago - 5 comments
Labels: develop

#127 - Big Images_From_ROIs (rebased onto dev_5_2)

Pull Request - State: closed - Opened by jburel about 8 years ago - 4 comments
Labels: dev_5_2

#126 - Roi

Pull Request - State: closed - Opened by jburel about 8 years ago - 2 comments

#125 - Close blitz

Pull Request - State: closed - Opened by jburel about 8 years ago

GitHub / ome/omero-scripts issues and pull requests