ome/omero-cli-zarr issues and pull requests

#163 - Issues with zarr python package >3

Issue - State: open - Opened by JensWendt 4 days ago

#162 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 2 months ago

#161 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago

#160 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#159 - scm version fix

Pull Request - State: closed - Opened by will-moore 9 months ago - 8 comments

#158 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago

#157 - Pixel type fix

Pull Request - State: closed - Opened by will-moore 10 months ago - 5 comments

#156 - Use versioneer for tagging (Fix #154)

Pull Request - State: closed - Opened by joshmoore 10 months ago - 14 comments

#155 - Flake8 fix, don't import input

Pull Request - State: closed - Opened by will-moore 10 months ago - 2 comments

#154 - ModuleNotFoundError: No module named 'omero_zarr._version'

Issue - State: open - Opened by will-moore 10 months ago - 10 comments

#153 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#152 - Remove `args` parameter from top-level functions

Issue - State: open - Opened by will-moore about 1 year ago

#151 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#150 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#149 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#148 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#147 - Name option

Pull Request - State: open - Opened by will-moore about 1 year ago - 7 comments

#146 - Fix path/to/image when exporting Plate images

Pull Request - State: closed - Opened by will-moore over 1 year ago - 1 comment

#145 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#144 - Use correct dimension_separator when downsampling

Pull Request - State: closed - Opened by will-moore over 1 year ago - 2 comments

#143 - Remove np.bool alias

Pull Request - State: closed - Opened by will-moore over 1 year ago - 9 comments

#142 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#141 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#140 - Add copyright headers to python files

Pull Request - State: closed - Opened by will-moore over 1 year ago - 4 comments

#139 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#138 - Replace print statements with logging

Issue - State: open - Opened by joshmoore over 1 year ago

#137 - Upgrade action

Pull Request - State: closed - Opened by jburel over 1 year ago

#136 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#135 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#134 - Big images

Pull Request - State: closed - Opened by will-moore over 1 year ago - 13 comments

#133 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#132 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#131 - Fix units -> unit

Pull Request - State: closed - Opened by will-moore almost 2 years ago - 3 comments

#130 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago

#129 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#128 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#127 - Installation instructions

Issue - State: open - Opened by will-moore about 2 years ago

#126 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#125 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#124 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#123 - Support export of Fileset:ID

Pull Request - State: open - Opened by will-moore about 2 years ago - 35 comments

#122 - export bioformats2raw.layout for Fileset or Images

Issue - State: open - Opened by will-moore about 2 years ago

#121 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago

#120 - add --allow_overlaps arg to cli

Pull Request - State: closed - Opened by will-moore over 2 years ago - 11 comments

#119 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#118 - Allow to use bioformats2raw to export HCS data

Pull Request - State: closed - Opened by sbesson over 2 years ago

#117 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#116 - Choose smallest np.dtype that handles labels data

Pull Request - State: closed - Opened by will-moore over 2 years ago - 3 comments

#115 - labels exported as dtype i8

Issue - State: closed - Opened by will-moore over 2 years ago - 1 comment

#114 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#113 - bioformats2raw 0.5.0 upgrade and specification compatibility

Issue - State: open - Opened by sbesson over 2 years ago - 1 comment

#112 - Add --bfpath option

Pull Request - State: closed - Opened by joshmoore over 2 years ago - 5 comments

#111 - `zarr export` doesn't support big images

Issue - State: closed - Opened by joshmoore over 2 years ago - 3 comments

#110 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#109 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#108 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago - 1 comment

#107 - Use of write_multiscale_labels for image

Pull Request - State: closed - Opened by will-moore over 2 years ago - 6 comments

#106 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#105 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#104 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#103 - Scale dict

Pull Request - State: closed - Opened by will-moore over 2 years ago - 2 comments

#102 - Zarr export tests

Pull Request - State: open - Opened by will-moore over 2 years ago - 26 comments

#101 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 2 years ago

#100 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#99 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#98 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#97 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#96 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#95 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#94 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#93 - Axes v0.4

Pull Request - State: closed - Opened by will-moore almost 3 years ago - 14 comments

#92 - Also define --output option at the subcommand parser for usability

Pull Request - State: closed - Opened by sbesson almost 3 years ago - 3 comments

#91 - Masks with Z or T null should apply across all Z or T indices

Issue - State: open - Opened by will-moore almost 3 years ago - 1 comment
Labels: bug

#90 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 3 years ago

#89 - Improve reporting the "export image" error

Issue - State: open - Opened by khaledk2 almost 3 years ago - 1 comment
Labels: enhancement

#88 - Export dataset

Pull Request - State: closed - Opened by will-moore almost 3 years ago - 3 comments