ome/omero-cli-transfer issues and pull requests

#94 - Major updates

Issue - State: open - Opened by jmuhlich about 1 month ago - 1 comment

#93 - Using omero transfer prepare on a systemd service

Issue - State: closed - Opened by technics3 2 months ago - 2 comments

#92 - Build

Pull Request - State: closed - Opened by jburel 3 months ago - 4 comments

#91 - dealing with empty `image.name` returned by `showinf` in `prepare` (also updating dependencies)

Pull Request - State: closed - Opened by erickmartins 5 months ago

#90 - using updated pytest interface

Pull Request - State: closed - Opened by erickmartins 6 months ago

#89 - packing/unpacking just the organizational structure, not the files

Issue - State: closed - Opened by dsudar 6 months ago - 6 comments

#88 - Issue when packing multiple Projects

Issue - State: open - Opened by lguerard 7 months ago - 1 comment

#87 - Attribute "Name" not set when importing a .czi file

Issue - State: closed - Opened by technics3 8 months ago - 7 comments

#86 - Readme update, test infra update

Pull Request - State: closed - Opened by erickmartins 8 months ago

#85 - packing list of objects

Pull Request - State: closed - Opened by erickmartins 9 months ago - 1 comment

#84 - Making reference to image IDs not contained in a pack negative in Figures

Pull Request - State: closed - Opened by erickmartins 9 months ago

#83 - transfer rendering settings

Issue - State: open - Opened by erickmartins 10 months ago

#82 - Fix non-existent image IDs in a Figure

Issue - State: closed - Opened by erickmartins 10 months ago - 1 comment

#81 - raising a `NonzeroReturnCode` when download fails

Pull Request - State: closed - Opened by erickmartins 11 months ago - 5 comments

#80 - sets action to "published" so it runs on prereleases

Pull Request - State: closed - Opened by erickmartins about 1 year ago

#79 - Annotation namespace corruption

Issue - State: closed - Opened by joshmoore about 1 year ago - 2 comments

#78 - Version compatibility

Issue - State: closed - Opened by joshmoore about 1 year ago - 4 comments

#77 - Restricted downloads silently ignored?

Issue - State: closed - Opened by joshmoore about 1 year ago - 1 comment

#76 - pack a list of images (a subset of a dataset)

Issue - State: closed - Opened by MM-abdrabbou about 1 year ago - 7 comments

#75 - Update infra

Pull Request - State: closed - Opened by jburel about 1 year ago - 21 comments

#74 - Changing from negative-id `CommentAnnotations` and `MapAnnotations` to `XMLAnnotations` for non-OME data model info

Pull Request - State: closed - Opened by erickmartins about 1 year ago - 4 comments

#73 - Added plugin interface for external packers

Pull Request - State: closed - Opened by cmohl2013 about 1 year ago - 3 comments

#72 - adds a --metadata-only option to pack

Pull Request - State: closed - Opened by glyg about 1 year ago - 12 comments

#71 - Is it possible to write an updated transfer.xml after unpack?

Issue - State: closed - Opened by glyg about 1 year ago - 7 comments

#70 - migrate to Docker Compose V2 using 'docker compose'

Pull Request - State: closed - Opened by govekk about 1 year ago

#69 - RFE: server-side option

Issue - State: open - Opened by joshmoore over 1 year ago - 8 comments

#68 - ARC export option

Issue - State: closed - Opened by cmohl2013 over 1 year ago - 5 comments

#67 - Packing and unpacking figures

Pull Request - State: closed - Opened by erickmartins over 1 year ago - 2 comments

#66 - Using XMLAnnotations for non-OME info

Issue - State: closed - Opened by erickmartins over 1 year ago

#65 - Human readable pack

Pull Request - State: closed - Opened by erickmartins over 1 year ago

#64 - object references in tables broken after unpack

Issue - State: open - Opened by juliomateoslangerak over 1 year ago - 1 comment

#63 - "human-readable" `pack`

Issue - State: closed - Opened by erickmartins over 1 year ago - 1 comment

#62 - updated ome-types version

Pull Request - State: closed - Opened by erickmartins over 1 year ago

#61 - using relative paths for `--filelist` as well

Pull Request - State: closed - Opened by erickmartins over 1 year ago

#60 - prepare now uses relative paths

Pull Request - State: closed - Opened by erickmartins over 1 year ago

#59 - [BUG] `prepare` hardcodes folder paths

Issue - State: closed - Opened by erickmartins over 1 year ago

#58 - Fix typo in README.md (forge not force, and single =)

Pull Request - State: closed - Opened by psobolewskiPhD over 1 year ago

#57 - Add `--merge` option to `unpack`

Pull Request - State: closed - Opened by erickmartins over 1 year ago - 1 comment

#56 - [FEATURE] add `--merge` option

Issue - State: closed - Opened by erickmartins over 1 year ago - 1 comment

#55 - `prepare` can take a filelist instead of folder path

Pull Request - State: closed - Opened by erickmartins over 1 year ago

#54 - small bug found in create_plate_map

Issue - State: closed - Opened by tlambert03 over 1 year ago - 5 comments

#53 - Add "filelist" option to `prepare`

Issue - State: closed - Opened by erickmartins over 1 year ago - 2 comments

#52 - EXPERIMENTAL addition of `omero transfer prepare`

Pull Request - State: closed - Opened by erickmartins over 1 year ago - 2 comments

#51 - allow `unpack`ing from a "clean" OME-XML

Issue - State: closed - Opened by erickmartins over 1 year ago - 3 comments

#50 - select which kinds of annotations to pack/unpack

Issue - State: open - Opened by erickmartins almost 2 years ago - 2 comments

#49 - Use new `Shape`s from ezomero

Issue - State: closed - Opened by erickmartins almost 2 years ago - 2 comments

#48 - Do not specify Python version

Pull Request - State: closed - Opened by jburel almost 2 years ago

#47 - licensing update

Pull Request - State: closed - Opened by erickmartins almost 2 years ago - 1 comment

#46 - fix indentation

Pull Request - State: closed - Opened by jburel almost 2 years ago - 1 comment

#45 - Attach acquisition metadata

Pull Request - State: closed - Opened by eyshin05 almost 2 years ago

#44 - remove twine

Pull Request - State: closed - Opened by jburel almost 2 years ago - 5 comments

#43 - Export/import acquisition metadata

Pull Request - State: closed - Opened by eyshin05 almost 2 years ago - 4 comments

#42 - RO-crate support

Pull Request - State: closed - Opened by erickmartins about 2 years ago

#41 - OME-NGFF transfer fails

Issue - State: closed - Opened by pwalczysko about 2 years ago - 18 comments

#40 - Roi and plate fixes

Pull Request - State: closed - Opened by erickmartins about 2 years ago

#39 - Text ROIs font

Issue - State: closed - Opened by pwalczysko about 2 years ago - 4 comments

#38 - Add DOI

Issue - State: closed - Opened by erickmartins about 2 years ago - 7 comments

#37 - Better tests, fixing "dataset to plate" issue and ROI fill/strokecolors

Pull Request - State: closed - Opened by erickmartins about 2 years ago

#36 - Typed functions

Pull Request - State: closed - Opened by erickmartins about 2 years ago

#35 - add RO-Crate export option

Issue - State: closed - Opened by erickmartins about 2 years ago - 1 comment

#34 - Fix formatting of <object> etc in README

Pull Request - State: closed - Opened by will-moore over 2 years ago - 1 comment

#33 - Plate created using Dataset to Plate

Issue - State: closed - Opened by pwalczysko over 2 years ago - 13 comments

#32 - Plate:ID and Screen:ID do not work in pack

Issue - State: closed - Opened by pwalczysko over 2 years ago - 5 comments

#31 - Adds `--metadata` options to `pack` and `unpack`

Pull Request - State: closed - Opened by erickmartins over 2 years ago

#30 - added import `--skip` options

Pull Request - State: closed - Opened by erickmartins over 2 years ago - 1 comment

#29 - Adding the option to skip the upgrade check of the OMERO import

Issue - State: closed - Opened by JensWendt over 2 years ago - 1 comment

#28 - fixes imports that autogenerate annotations

Pull Request - State: closed - Opened by erickmartins over 2 years ago

#27 - Md5 fix for OOM errors and skipping failed/missing images

Pull Request - State: closed - Opened by erickmartins over 2 years ago - 1 comment

#26 - Make unpack errors fail more gracefully

Issue - State: closed - Opened by erickmartins over 2 years ago - 2 comments

#25 - Bioimage archive export option

Pull Request - State: closed - Opened by erickmartins over 2 years ago

#24 - Make transfer metadata optional

Issue - State: closed - Opened by erickmartins over 2 years ago - 3 comments

#23 - Extra packing/unpacking options

Pull Request - State: closed - Opened by erickmartins over 2 years ago

#22 - Allow for different export formats

Issue - State: closed - Opened by erickmartins almost 3 years ago - 1 comment

#21 - Improved testing

Pull Request - State: closed - Opened by erickmartins almost 3 years ago

#20 - pip install problem

Issue - State: closed - Opened by abhamacher almost 3 years ago - 2 comments

#19 - casting ID of non-file image as str for export

Pull Request - State: closed - Opened by erickmartins almost 3 years ago

#18 - Screens and plates

Pull Request - State: closed - Opened by erickmartins almost 3 years ago

#17 - Extra annotations (Comments, Ratings, File Annotations)

Pull Request - State: closed - Opened by erickmartins almost 3 years ago

#16 - Enforcing whole filesets in XML files, filtering destination IDs

Pull Request - State: closed - Opened by erickmartins almost 3 years ago - 2 comments

#15 - Extended rois

Pull Request - State: closed - Opened by erickmartins almost 3 years ago

#14 - Multifile

Pull Request - State: closed - Opened by erickmartins almost 3 years ago - 23 comments

#13 - Transfer of ROI settings

Issue - State: closed - Opened by pwalczysko almost 3 years ago - 30 comments

#12 - Lingering images from previous run blocking

Issue - State: closed - Opened by pwalczysko almost 3 years ago - 16 comments

#11 - Allowing for transfer of images without `OriginalFile`s

Pull Request - State: closed - Opened by erickmartins almost 3 years ago - 2 comments

GitHub / ome/omero-cli-transfer issues and pull requests