Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ome/ome-zarr-py issues and pull requests
#400 - Validate ome.zarr file with the python library?
Issue -
State: open - Opened by constantinpape 29 days ago
- 7 comments
#399 - Patch ZipStore for write_image and write_multiscale method using Dask arrays with storage_options
Pull Request -
State: open - Opened by snibbor about 1 month ago
- 1 comment
#398 - Remove GH actions pre-commit workflow
Pull Request -
State: open - Opened by dstansby about 1 month ago
- 1 comment
#397 - Update version of pyupgrade
Pull Request -
State: open - Opened by dstansby about 1 month ago
- 1 comment
#396 - Document return values of sample data
Pull Request -
State: open - Opened by dstansby about 1 month ago
- 1 comment
#395 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: open - Opened by pre-commit-ci[bot] about 2 months ago
- 1 comment
#394 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 2 months ago
- 1 comment
#393 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 2 months ago
#392 - Issue: Repeated Dask Computation When Calling `write_image` or `write_labels` with Downsampling Level > 0
Issue -
State: open - Opened by Karl5766 2 months ago
- 3 comments
#391 - Enable numpy 2 (lift pin in setup.py)
Pull Request -
State: closed - Opened by psobolewskiPhD 2 months ago
- 3 comments
#390 - Download via CLI errors without --output option
Issue -
State: open - Opened by govekk 3 months ago
#389 - napari 0.5 support
Pull Request -
State: closed - Opened by jni 3 months ago
- 14 comments
#388 - Write metadata using delayed that depends on writing array(s)
Pull Request -
State: closed - Opened by joshua-gould 3 months ago
- 5 comments
#387 - Drop aiohttp cap (fix #146)
Pull Request -
State: open - Opened by joshmoore 3 months ago
#386 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 3 months ago
#385 - Pin numpy<2 in setup.py
Pull Request -
State: closed - Opened by will-moore 3 months ago
- 3 comments
#384 - cap numpy to less than 2
Pull Request -
State: closed - Opened by jburel 3 months ago
#383 - Zarr v3 support
Pull Request -
State: closed - Opened by will-moore 4 months ago
- 10 comments
#382 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 4 months ago
- 1 comment
#381 - Drop support for Python 3.8
Pull Request -
State: closed - Opened by dstansby 4 months ago
- 6 comments
#380 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 4 months ago
- 1 comment
#376 - Cannot overwrite Zarr opened with `mode= "a"`
Issue -
State: open - Opened by chourroutm 5 months ago
- 3 comments
#375 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 5 months ago
#374 - Revert A005 ignore: "module is shadowing python builtin module"
Issue -
State: open - Opened by joshmoore 5 months ago
#373 - Update to codecov 4
Pull Request -
State: closed - Opened by joshmoore 5 months ago
- 3 comments
#372 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 5 months ago
#371 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 5 months ago
#370 - add #261 to changelog
Pull Request -
State: closed - Opened by giovp 5 months ago
- 2 comments
#369 - Read from public S3 URI without credentials
Issue -
State: closed - Opened by pgarrison 5 months ago
#368 - Package-level members
Issue -
State: closed - Opened by vreuter 6 months ago
- 2 comments
#367 - Improve CLI docs
Pull Request -
State: closed - Opened by dstansby 6 months ago
- 3 comments
#366 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 6 months ago
- 3 comments
#365 - Fix scalar chunking
Pull Request -
State: closed - Opened by dstansby 6 months ago
- 3 comments
#364 - write_image with scalar chunks only sets chunks of last axis
Issue -
State: closed - Opened by dstansby 6 months ago
#363 - unable to `write_image` into a zipStore?
Issue -
State: open - Opened by BioinfoTongLI 6 months ago
- 1 comment
#362 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 6 months ago
#361 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 6 months ago
- 1 comment
#360 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 7 months ago
#359 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 7 months ago
#358 - Allow to change downsample function
Pull Request -
State: closed - Opened by nhatnm52 7 months ago
- 5 comments
#357 - Reaching maximum recursion depth while loading zarr file
Issue -
State: closed - Opened by FIrgolitsch 7 months ago
- 9 comments
#355 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 7 months ago
#354 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 8 months ago
- 1 comment
#353 - Incompatibility with Poetry?
Issue -
State: open - Opened by akhanf 8 months ago
- 3 comments
#352 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 8 months ago
- 2 comments
#351 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 8 months ago
#350 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 8 months ago
#349 - Support init of ome_zarr_py.io.ZarrLocation with zarr.storage.FSStore
Pull Request -
State: closed - Opened by berombau 8 months ago
- 7 comments
#348 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 8 months ago
- 1 comment
#347 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 9 months ago
#346 - Pyproject.toml & setuptools_scm support
Pull Request -
State: open - Opened by joshmoore 9 months ago
- 9 comments
#345 - Reading multiscales metadata
Issue -
State: closed - Opened by k-dominik 9 months ago
- 5 comments
#344 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 10 months ago
#343 - Using parse_url to create a store reads arrays with all zeros
Issue -
State: open - Opened by joshua-gould 10 months ago
- 10 comments
#342 - Unpin fsspec in dev requirements
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 2 comments
#341 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 10 months ago
#340 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 10 months ago
#339 - Cannot read coinsdata created according to document
Issue -
State: open - Opened by hkthirano 10 months ago
- 2 comments
#338 - Simplify testing setup + Python 3.12 tests
Pull Request -
State: closed - Opened by dstansby 10 months ago
#337 - Improve documentation structure
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 1 comment
#336 - Fix doc install instructions in README
Pull Request -
State: closed - Opened by dstansby 10 months ago
#335 - Gha update
Pull Request -
State: closed - Opened by jburel 10 months ago
#334 - Clarify that dask input images are never computed
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 1 comment
#333 - Update and fix pre-commit
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 2 comments
#332 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop 10 months ago
#331 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 10 months ago
#330 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 10 months ago
#329 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 10 months ago
#328 - Only install required deps when testing
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 1 comment
#327 - Add tests on python 3.11
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 1 comment
#326 - Simplify first example in docs
Pull Request -
State: closed - Opened by dstansby 10 months ago
- 1 comment
#325 - Releases on GitHub out of date
Issue -
State: closed - Opened by dstansby 10 months ago
- 1 comment
#324 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop 11 months ago
#323 - Cannot find HCS well on Windows
Issue -
State: closed - Opened by ziw-liu 11 months ago
- 2 comments
#322 - fix reading HCS datasets at cloud paths https://github.com/ome/ome-zarr-py/issues/321
Pull Request -
State: closed - Opened by elyall 11 months ago
- 3 comments
#321 - [Reader] reading HCS file on AWS S3 results in error
Issue -
State: closed - Opened by elyall 11 months ago
- 14 comments
#320 - fix layout
Pull Request -
State: closed - Opened by jburel 11 months ago
#319 - Readme should include how to install sphinx-rtd-theme
Issue -
State: closed - Opened by iandobbie 12 months ago
#318 - Clarify that write_multiscale takes pre-computed arrays
Pull Request -
State: closed - Opened by dstansby 12 months ago
#317 - update docs to include write example for HCS dataset
Pull Request -
State: closed - Opened by elyall 12 months ago
- 7 comments
#316 - Minor improvements to format docs
Pull Request -
State: closed - Opened by dstansby almost 1 year ago
- 1 comment
#315 - Add dask to intersphinx mapping
Pull Request -
State: closed - Opened by dstansby almost 1 year ago
- 1 comment
#314 - changelog 0.8.2
Pull Request -
State: closed - Opened by will-moore almost 1 year ago
- 1 comment
#313 - Add conda to installation options
Pull Request -
State: closed - Opened by dstansby almost 1 year ago
- 1 comment
#312 - Simpler startswith() and isinstance() calls
Pull Request -
State: closed - Opened by DimitriPapadopoulos about 1 year ago
- 1 comment
#311 - Isn't `version` a `str`?
Issue -
State: open - Opened by DimitriPapadopoulos about 1 year ago
- 2 comments
#310 - `factors` is already a tuple
Pull Request -
State: closed - Opened by DimitriPapadopoulos about 1 year ago
#309 - Update python.rst to have min, max for window
Pull Request -
State: closed - Opened by seankmartin about 1 year ago
- 1 comment
#308 - Test suite failure for commit
Issue -
State: closed - Opened by snoopycrimecop about 1 year ago
#307 - Exclude fsspec 2023.9.0
Pull Request -
State: closed - Opened by will-moore about 1 year ago
#306 - Test suite failure for commit
Issue -
State: open - Opened by snoopycrimecop about 1 year ago
#305 - write_image fails with fsspec 2023.9.0
Issue -
State: closed - Opened by joshua-gould about 1 year ago
- 1 comment
#304 - `auto_mkdir` not propagated resulting in FileNotFoundError during `write_image`
Issue -
State: open - Opened by npeschke about 1 year ago
- 4 comments
#303 - Dump sample scripts - maybe add to docs
Pull Request -
State: open - Opened by will-moore about 1 year ago
- 4 comments
#302 - [test-bot] pip install --pre is failing
Issue -
State: open - Opened by github-actions[bot] about 1 year ago
- 2 comments
Labels: bug
#301 - Add sphinx_rtd_theme to docs dependencies
Pull Request -
State: closed - Opened by will-moore about 1 year ago
- 8 comments
#300 - Avoid hard-coded field-of-view path "0"
Pull Request -
State: closed - Opened by aeisenbarth about 1 year ago
- 5 comments
#299 - Fix compute() on plate grid
Pull Request -
State: closed - Opened by will-moore about 1 year ago
- 6 comments
#298 - Using a ZipStore instead of FSStore
Issue -
State: open - Opened by jni about 1 year ago
- 7 comments
#297 - Dask arrays for HCS nodes do not `compute` to NumPy arrays
Issue -
State: closed - Opened by ziw-liu about 1 year ago
- 2 comments