ome/bioformats issues and pull requests

#3738 - Improve tile read speeds for some pyramid OME-TIFFs

Pull Request - State: closed - Opened by melissalinkert about 3 years ago - 2 comments

#3726 - ND2 metadata parsing fixes

Pull Request - State: closed - Opened by melissalinkert about 3 years ago - 1 comment

#3722 - ImageConverter not support openslide api

Issue - State: closed - Opened by mywsat about 3 years ago - 2 comments

#3713 - Add support for VisiView STK files

Pull Request - State: closed - Opened by dgault over 3 years ago - 5 comments
Labels: exclude

#3710 - CZI pyramid not detected / tile width not correct

Issue - State: closed - Opened by melissalinkert over 3 years ago - 1 comment
Labels: reader:ZeissCZI

#3706 - MRCReader: invert planes in Y for FEI variants

Issue - State: open - Opened by sbesson over 3 years ago - 2 comments
Labels: enhancement

#3682 - SVS: handle optional label and macro images

Issue - State: closed - Opened by sbesson over 3 years ago - 5 comments
Labels: reader:SVS

#3680 - Performance increase in writeIFD

Pull Request - State: closed - Opened by iwbh15 over 3 years ago - 36 comments
Labels: exclude

#3678 - Ventana BIF: Z stacks not supported

Issue - State: open - Opened by dgault over 3 years ago - 6 comments

#3661 - ND2: Skewed image display

Issue - State: open - Opened by dgault almost 4 years ago - 10 comments
Labels: reader:NativeND2

#3653 - Imaris: null PixelType exception

Issue - State: closed - Opened by dgault almost 4 years ago - 2 comments

#3636 - Opening a large (17 GB) delta vision file.

Issue - State: closed - Opened by ajasja about 4 years ago - 11 comments

#3634 - FileStitcher: add reader.close() statement when setting the class list

Pull Request - State: closed - Opened by sbesson about 4 years ago - 3 comments

#3618 - Memoizer: Persist caching to sub readers

Pull Request - State: open - Opened by dgault about 4 years ago - 1 comment
Labels: breaking

#3616 - JPEG: IndexOutOfBoundsException

Issue - State: closed - Opened by dgault about 4 years ago - 3 comments

#3607 - nii vs nii.gz

Issue - State: closed - Opened by dominikl over 4 years ago - 11 comments

#3594 - nd2 Multipoint is read as timeseries

Issue - State: closed - Opened by gatoniel over 4 years ago - 2 comments
Labels: reader:NativeND2

#3582 - IVision - Use stricter format recognition

Issue - State: closed - Opened by dgault over 4 years ago - 1 comment

#3578 - MetaMorph: NegativeArraySizeException

Issue - State: closed - Opened by dgault over 4 years ago - 3 comments

#3565 - ND2 time lapse time stamps are not read correctly

Issue - State: closed - Opened by manerotoni over 4 years ago - 15 comments
Labels: reader:NativeND2

#3541 - Conversion of OME Creator attribute

Issue - State: closed - Opened by sbesson over 4 years ago - 1 comment
Labels: enhancement

#3539 - ICS Writer: export fails when cropping dimensions

Issue - State: closed - Opened by dgault over 4 years ago
Labels: bug, writer:ics

#3537 - Flex: Merge IDR changes and add new group plate option

Pull Request - State: closed - Opened by dgault over 4 years ago - 21 comments
Labels: exclude

#3526 - JPEG service: fix off-by-one when using restart markers to build a tile's stream

Pull Request - State: closed - Opened by melissalinkert over 4 years ago - 4 comments

#3525 - CZI: empty planes in XT line-scan

Issue - State: open - Opened by dgault over 4 years ago - 4 comments
Labels: reader:ZeissCZI

#3523 - TIFF: Add warning for missing metadata such as physical size Z

Issue - State: open - Opened by dgault over 4 years ago - 2 comments
Labels: enhancement

#3517 - Recent ND2 files cannot be opened by bio-formats with NegativeArraySizeException

Issue - State: open - Opened by aarpon over 4 years ago - 11 comments
Labels: reader:NativeND2, bug

#3510 - SCN: Incorrect image color

Issue - State: open - Opened by dgault over 4 years ago - 12 comments
Labels: bug, reader:LeicaSCN

#3487 - ND2 - Timelapse stacks open as single image

Issue - State: closed - Opened by mfkeles almost 5 years ago - 6 comments
Labels: reader:NativeND2

#3480 - slow TiffWriter performance

Issue - State: closed - Opened by ebremer almost 5 years ago - 5 comments

#3476 - ND2 - Incorrect time stamps

Issue - State: closed - Opened by dgault almost 5 years ago - 3 comments
Labels: reader:NativeND2

#3457 - Support for C#

Issue - State: closed - Opened by ricklina90 about 5 years ago - 4 comments
Labels: enhancement, wontfix

#3451 - incorrect UUID of tiled image

Issue - State: open - Opened by atarkowska about 5 years ago - 1 comment
Labels: question

#3450 - shortLut causes NullPointException

Issue - State: closed - Opened by ltwonders about 5 years ago - 6 comments
Labels: bug

#3440 - Exposing original image tile bytes

Issue - State: open - Opened by ebremer about 5 years ago - 5 comments
Labels: enhancement

#3419 - CV7000Reader breaks inside S3Handle.canHandleScheme

Issue - State: open - Opened by mtbc over 5 years ago
Labels: bug, reader:CV7000

#3383 - InCell 1000/2000: don't trust the plane count in the "Images" element

Pull Request - State: closed - Opened by melissalinkert over 5 years ago - 2 comments

#3370 - setting JPEG compression quality with bfconvert

Issue - State: closed - Opened by ebremer over 5 years ago - 5 comments
Labels: enhancement

#3347 - Add FormatTools methods for creating well names

Pull Request - State: closed - Opened by melissalinkert over 5 years ago - 4 comments

#3333 - MikroscanTiffReader Addition

Pull Request - State: closed - Opened by redcrow over 5 years ago - 19 comments
Labels: include, reader:new

#3313 - ND2 Incorrect Series Count and T Size

Issue - State: open - Opened by MXGHarryLiu almost 6 years ago - 13 comments
Labels: reader:NativeND2

#3300 - Bioformats unable to read image pyramid generated by VIPS 8.7.0

Issue - State: open - Opened by ebremer almost 6 years ago - 16 comments
Labels: enhancement

#3242 - [WARN] No pixel block error

Issue - State: closed - Opened by naomicxia about 6 years ago - 13 comments

#2959 - Add reader for IonpathMIBI TIFF

Pull Request - State: closed - Opened by rfinck about 7 years ago - 10 comments
Labels: include, reader:new

#2955 - ND2 incorrect T, Z sizes

Issue - State: closed - Opened by caspervdw about 7 years ago - 6 comments
Labels: reader:NativeND2

#2544 - NDPI to TIFF conversion is failling

Issue - State: open - Opened by felixveysseyre about 8 years ago - 7 comments
Labels: reader:NDPI

#1824 - TJDecompressor.java:305 can cause error in java runtime environment

Issue - State: open - Opened by kkjaergaard over 9 years ago - 2 comments
Labels: reader:NDPI

#413 - Removing dead free download link

Pull Request - State: closed - Opened by hflynn over 11 years ago - 1 comment

GitHub / ome/bioformats issues and pull requests