Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ome/ZarrReader issues and pull requests
#96 - Multiple PlateAcquisitions: Images in wrong Wells
Issue -
State: open - Opened by will-moore 25 days ago
- 1 comment
#95 - Class cast exception when parsing metadata
Pull Request -
State: open - Opened by dgault about 1 month ago
- 7 comments
#94 - `java.lang.ClassCastException` on ZARR import
Issue -
State: open - Opened by jo-mueller about 2 months ago
- 8 comments
#93 - Bump version to 0.5.3-SNAPSHOT
Pull Request -
State: closed - Opened by dgault 2 months ago
#92 - Bump version to 0.5.2
Pull Request -
State: closed - Opened by dgault 2 months ago
#91 - Bump Bio-Formats version to 7.3.1
Pull Request -
State: closed - Opened by dgault 2 months ago
#90 - Bump version to 0.5.2-SNAPSHOT
Pull Request -
State: closed - Opened by dgault 4 months ago
#89 - Bump version to 0.5.1
Pull Request -
State: closed - Opened by dgault 4 months ago
#88 - Add Change Log for 0.5.1
Pull Request -
State: closed - Opened by dgault 4 months ago
#87 - Bump formats-api version to 7.3.0
Pull Request -
State: closed - Opened by dgault 4 months ago
#86 - Bumping version to 0.5.1-SNAPSHOT
Pull Request -
State: closed - Opened by dgault 4 months ago
#85 - Bump version to 0.5.0
Pull Request -
State: closed - Opened by dgault 4 months ago
#84 - ChangeLog: Add missing entry for PR #75
Pull Request -
State: closed - Opened by dgault 4 months ago
#83 - Issue with the Microservices when using the OMEZarrReader build from PR 82
Issue -
State: open - Opened by khaledk2 6 months ago
#82 - Reintroduce S3FileSystemStore
Pull Request -
State: closed - Opened by dgault 7 months ago
- 32 comments
#81 - add Java 17 to testing matrix
Pull Request -
State: closed - Opened by jburel 7 months ago
#80 - Review action
Pull Request -
State: closed - Opened by jburel 7 months ago
- 1 comment
#78 - Reduce number of fields in memo file
Pull Request -
State: open - Opened by dgault 8 months ago
- 4 comments
#77 - Index Out Of Bounds when importing to OMERO docker
Issue -
State: open - Opened by pwalczysko 8 months ago
#76 - blosc problem on import of ome.zarr into OMERO
Issue -
State: open - Opened by pwalczysko 8 months ago
- 3 comments
#75 - Update handling and parsing of acquisition metadata
Pull Request -
State: closed - Opened by dgault 9 months ago
- 1 comment
#74 - JZarr: Add jackson.core and jackson-databind to exclsions
Pull Request -
State: closed - Opened by dgault 10 months ago
- 3 comments
#73 - Update ReadMe and Change Log
Pull Request -
State: closed - Opened by dgault 10 months ago
- 4 comments
#72 - OMEZarrReader.jar download link to artifactory
Issue -
State: closed - Opened by will-moore 10 months ago
#71 - Bump Bio-Formats to version 7.1.0
Pull Request -
State: closed - Opened by sbesson 10 months ago
#70 - Bump version to 0.4.1-SNAPSHOT
Pull Request -
State: closed - Opened by dgault 10 months ago
#69 - Bump version to 0.4.0
Pull Request -
State: closed - Opened by dgault 10 months ago
#68 - Future API updates
Issue -
State: open - Opened by dgault 10 months ago
#67 - NGFF Testing
Issue -
State: closed - Opened by dgault 11 months ago
- 8 comments
#66 - Bump dev.zarr:jzarr to 0.4.2
Pull Request -
State: closed - Opened by sbesson 11 months ago
- 5 comments
#65 - Bumping Bio-Formats version to 7.0.0
Pull Request -
State: closed - Opened by dgault about 1 year ago
#64 - ZarrReader performance improvements
Pull Request -
State: closed - Opened by dgault about 1 year ago
- 61 comments
#63 - Memo file generation - performance
Issue -
State: closed - Opened by will-moore about 1 year ago
- 1 comment
#62 - Update README.md
Pull Request -
State: closed - Opened by joshmoore about 1 year ago
- 1 comment
#61 - Deps missing from B-F update site
Issue -
State: open - Opened by joshmoore about 1 year ago
- 1 comment
#60 - Correct README regarding jzarr library
Issue -
State: closed - Opened by joshmoore about 1 year ago
- 1 comment
#59 - Actions update
Pull Request -
State: closed - Opened by jburel about 1 year ago
- 1 comment
#58 - Add new option to list pixels in getUsedFiles
Pull Request -
State: closed - Opened by dgault about 1 year ago
- 5 comments
#57 - Use canonical path for calls to ZarrService
Pull Request -
State: closed - Opened by dgault over 1 year ago
- 9 comments
#56 - remove duplicate declaration
Pull Request -
State: closed - Opened by jburel over 1 year ago
#55 - ClassCastException when parsing acqusition start time
Issue -
State: open - Opened by dgault over 1 year ago
- 1 comment
#54 - Move to dev.zarr:jzarr
Pull Request -
State: closed - Opened by joshmoore over 1 year ago
- 1 comment
#53 - Reorder group keys
Pull Request -
State: closed - Opened by dgault over 1 year ago
- 15 comments
#52 - Try to reproduce Well reordering issue with Fileset swapping
Issue -
State: open - Opened by will-moore over 1 year ago
- 6 comments
#51 - Bump version to 0.3.2-SNAPSHOT
Pull Request -
State: closed - Opened by dgault over 1 year ago
#50 - Bump version to 0.3.1
Pull Request -
State: closed - Opened by dgault over 1 year ago
#49 - ZarrReader: Update handling of pre-existing plate metadata
Pull Request -
State: closed - Opened by dgault over 1 year ago
- 2 comments
#48 - NPE: Using idr0138
Issue -
State: closed - Opened by jburel over 1 year ago
- 1 comment
#47 - upgrade setup-java action. Current version uses set-output
Pull Request -
State: closed - Opened by jburel over 1 year ago
#46 - Document blosc requirement
Issue -
State: open - Opened by joshmoore over 1 year ago
#45 - "Unable to load library 'blosc'" error when reading pixel data
Issue -
State: closed - Opened by aoles over 1 year ago
- 2 comments
#44 - Multiple multiscales
Issue -
State: open - Opened by will-moore almost 2 years ago
- 6 comments
#43 - Fail on import of a plate
Issue -
State: open - Opened by pwalczysko almost 2 years ago
- 1 comment
#42 - switch to new output command
Pull Request -
State: closed - Opened by jburel almost 2 years ago
- 1 comment
#41 - ZarrReader: Update getUsedFiles to use the noPixels flag
Pull Request -
State: closed - Opened by dgault about 2 years ago
- 3 comments
#40 - NGFF Plate import - slow and OOM due to many files
Issue -
State: open - Opened by will-moore about 2 years ago
- 4 comments
#39 - Import of zarr into OMERO merge-ci latest-ci
Issue -
State: closed - Opened by pwalczysko about 2 years ago
- 4 comments
#38 - Dependency updates
Pull Request -
State: closed - Opened by dgault over 2 years ago
- 9 comments
#37 - Import of zarr is slower
Issue -
State: open - Opened by pwalczysko over 2 years ago
- 1 comment
#36 - naming of images in omero
Issue -
State: open - Opened by pwalczysko over 2 years ago
- 3 comments
#35 - Test xarray compatible datasets
Issue -
State: open - Opened by joshmoore over 2 years ago
- 1 comment
#34 - No original metadata
Issue -
State: closed - Opened by pwalczysko over 2 years ago
- 1 comment
#33 - HCS and handling of row/column index keys
Issue -
State: closed - Opened by sbesson over 2 years ago
- 1 comment
#32 - Integration with Bio-Formats
Issue -
State: open - Opened by sbesson over 2 years ago
#31 - ZarrReader: Add support for OME-XML from bf2raw
Pull Request -
State: closed - Opened by dgault over 2 years ago
- 30 comments
#30 - Minor adjustments
Pull Request -
State: closed - Opened by jburel over 2 years ago
- 2 comments
#29 - Remove dependency
Pull Request -
State: closed - Opened by jburel over 2 years ago
#28 - ZarrReader: Add support for OME-XML from bf2raw
Pull Request -
State: closed - Opened by dgault over 2 years ago
- 2 comments
#27 - Wrong pixel values in ome.zarr made from ome.tiff
Issue -
State: closed - Opened by pwalczysko over 2 years ago
- 2 comments
#26 - Detection of files not inside the zarr folder if nested into another .zarr folder
Issue -
State: open - Opened by pwalczysko over 2 years ago
- 7 comments
#25 - Multi-file images do not import correctly if nested in a .zarr folder
Issue -
State: open - Opened by pwalczysko over 2 years ago
- 7 comments
#24 - ZarrReader: HCS validation fixes
Pull Request -
State: closed - Opened by dgault over 2 years ago
- 15 comments
#23 - Fixes for dimension and tiling issues
Pull Request -
State: closed - Opened by dgault over 2 years ago
#22 - HCS validation errors
Issue -
State: closed - Opened by sbesson over 2 years ago
#21 - ZarrReader: Fix for plates with no acquisitions
Pull Request -
State: closed - Opened by dgault over 2 years ago
#20 - ZarrReader: Use chunk API
Pull Request -
State: open - Opened by dgault over 2 years ago
- 3 comments
#19 - Plates with no acquisitions metadata throw a NPE
Issue -
State: closed - Opened by sbesson over 2 years ago
#18 - Incorrect handling of images with labels
Issue -
State: open - Opened by sbesson over 2 years ago
#17 - Incorrectly detected dimensions and tile sizes
Issue -
State: closed - Opened by sbesson over 2 years ago
- 1 comment
#16 - OS X arm64 support (jna dependency)
Issue -
State: open - Opened by sbesson over 2 years ago
#15 - Unidata dependency unification
Issue -
State: closed - Opened by sbesson over 2 years ago
- 1 comment
#14 - Add standard build metadata to the JAR manifest
Pull Request -
State: closed - Opened by sbesson over 2 years ago
- 1 comment
#13 - Add BSD-2 license
Pull Request -
State: closed - Opened by sbesson over 2 years ago
- 1 comment
#12 - Small jar deployment
Pull Request -
State: closed - Opened by joshmoore almost 3 years ago
- 6 comments
#11 - Activate tests in maven
Pull Request -
State: closed - Opened by joshmoore almost 3 years ago
- 1 comment
#10 - Drop uber jar ?
Issue -
State: open - Opened by joshmoore almost 3 years ago
- 1 comment
#9 - Extend workflow to upload built JAR as a CI artifact
Pull Request -
State: closed - Opened by sbesson almost 3 years ago
- 1 comment
#8 - ZarrReader: Update to support 0.4.0 datasets
Pull Request -
State: closed - Opened by dgault about 3 years ago
- 29 comments
#7 - Replace Doubles with Integers
Pull Request -
State: closed - Opened by joshmoore about 3 years ago
- 1 comment
#6 - Pass 'level' to CompressorFactory
Pull Request -
State: closed - Opened by joshmoore about 3 years ago
- 1 comment
#5 - ZarrReader: NPE and parsing fixes
Pull Request -
State: closed - Opened by dgault about 3 years ago
- 2 comments
#4 - Bump to SNAPSHOT for merge build
Pull Request -
State: closed - Opened by joshmoore about 3 years ago
- 8 comments
#3 - ZarrReader: Add Unit tests
Pull Request -
State: closed - Opened by dgault over 3 years ago
- 3 comments
#2 - Actions
Pull Request -
State: closed - Opened by jburel over 3 years ago
- 5 comments
#1 - Initial Prototype ZarrReader
Pull Request -
State: closed - Opened by dgault over 3 years ago