Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / omarwagih/ggseqlogo issues and pull requests

#41 - changing x axis labels from numeric to protease cleavage

Issue - State: closed - Opened by lxavierneves 23 days ago - 1 comment

#38 - error in makePFM when using method='prob'

Issue - State: open - Opened by dxl3742 9 months ago

#37 - RNA seq logo

Issue - State: open - Opened by XqKang about 1 year ago

#36 - Package was removed from CRAN

Issue - State: closed - Opened by aviezerl about 1 year ago - 2 comments

#35 - exclude WT sequence from seqlogo results

Issue - State: open - Opened by weipinghh about 1 year ago

#34 - The vignette acts weirdly in RStudio

Issue - State: closed - Opened by pormr about 1 year ago - 2 comments

#33 - Fixed ggplot2 `guides` deprecation warning

Pull Request - State: closed - Opened by aviezerl over 1 year ago

#32 - Deprecated feature from ggplot2 3.3.4 used in ggseqlogo

Issue - State: open - Opened by Brochiert over 1 year ago

#31 - sequence logo with phosphorylated amino acids

Issue - State: open - Opened by ryoshunki over 1 year ago - 3 comments

#30 - Error for single base plotting

Issue - State: open - Opened by kaufm202 almost 2 years ago

#27 - Gaps

Issue - State: open - Opened by PotapenkoEugene about 2 years ago

#26 - Amino acid chemistry color scheme

Issue - State: open - Opened by durrantmm about 2 years ago

#25 - Error bars

Issue - State: open - Opened by rioualen over 2 years ago - 1 comment

#24 - The Character "U" i s missing for aa

Issue - State: closed - Opened by lwlive over 2 years ago - 2 comments

#23 - GC percent correction

Issue - State: open - Opened by ryuma-matsubara over 2 years ago - 1 comment

#22 - Change numbers on the x-axis of logos

Issue - State: open - Opened by maximus-sci over 2 years ago - 3 comments

#21 - Keep same nucleotide order across all positions ?

Issue - State: open - Opened by rezenman over 3 years ago

#20 - Logo Range

Issue - State: open - Opened by haruosuz over 3 years ago - 2 comments

#19 - add option to avoid using small sample correction?

Issue - State: open - Opened by jayoung almost 4 years ago

#18 - Version of LGPL?

Issue - State: closed - Opened by smoe over 4 years ago - 1 comment

#17 - Using list of sequences vs. PWM to generate plot produces different bit heights

Issue - State: closed - Opened by sd46w over 4 years ago - 2 comments

#16 - bug fix to allow single-column "logos"

Pull Request - State: closed - Opened by cvaske almost 5 years ago

#15 - Height method

Issue - State: open - Opened by TOWARDSzs about 5 years ago

#14 - Facet plots in `geom_logo` should follow ggplot2 conventions

Issue - State: closed - Opened by MattBrauer over 5 years ago - 4 comments

#13 - Added support for dataframe as input in geom_seqlogo

Pull Request - State: open - Opened by soumitrakp about 6 years ago

#12 - different color schemes for different sites?

Issue - State: closed - Opened by jbloom over 6 years ago - 2 comments

#11 - Using different TSD lengths as facetting variable

Issue - State: closed - Opened by mobilegenome almost 7 years ago - 1 comment

#10 - Fixed stacking order

Issue - State: closed - Opened by mathieudupont almost 7 years ago - 2 comments

#9 - Separate scale

Pull Request - State: open - Opened by ewallace about 7 years ago - 1 comment

#8 - Custom x-scale - separate scale_x_logo from geom_logo?

Issue - State: open - Opened by ewallace about 7 years ago - 1 comment

#7 - Implement EDLogo in ggseqlogo?

Issue - State: open - Opened by ewallace about 7 years ago

#6 - Greek letters not supported

Issue - State: closed - Opened by aroelo about 7 years ago - 1 comment

#5 - stack_with affects x axis tick positions

Issue - State: open - Opened by pwwang about 7 years ago

#4 - Top most letters plottet incorrectly if ylim is smaller than sum of position

Issue - State: closed - Opened by leonjessen about 7 years ago - 1 comment

#3 - Sample data not working

Issue - State: closed - Opened by egenomics over 7 years ago - 1 comment

#2 - Small Sample Correction Not working

Issue - State: closed - Opened by jglavina over 7 years ago - 1 comment

#1 - Strange `custom` behaviour when dimensions are not matched.

Issue - State: closed - Opened by ivan-krukov over 7 years ago - 1 comment