oist/optinist issues and pull requests

#651 - Develop main

Pull Request - State: closed - Opened by milesAraya 24 days ago - 1 comment

#650 - Release/1.3.0

Pull Request - State: closed - Opened by milesAraya 24 days ago

#649 - Merge barebone

Pull Request - State: closed - Opened by milesAraya 25 days ago

#648 - Update the docker install docs

Issue - State: open - Opened by kushalkolar 3 months ago
Labels: enhancement

#647 - Improve API Error Handling, etc

Pull Request - State: closed - Opened by itutu-tienday 4 months ago

#646 - Feature/update test run test

Pull Request - State: closed - Opened by itutu-tienday 6 months ago

#645 - Update Test Run

Pull Request - State: closed - Opened by itutu-tienday 6 months ago

#644 - Merge barebone-studio/develop-main to optinist/develop-main

Pull Request - State: closed - Opened by itutu-tienday 7 months ago

#643 - Merge barebone-studio/develop-main to optinist/develop-main

Pull Request - State: closed - Opened by itutu-tienday 7 months ago

#642 - modify poetry option on dockerfile

Pull Request - State: closed - Opened by itutu-tienday 8 months ago

#641 - Docker image

Issue - State: closed - Opened by milesAraya 8 months ago - 1 comment
Labels: bug

#640 - Fix some incorrect documents in multiuser doc

Pull Request - State: closed - Opened by kngwyu 8 months ago - 4 comments

#639 - Remove unused hover code

Pull Request - State: closed - Opened by milesAraya 8 months ago - 1 comment

#638 - Release v1.2.1

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#637 - build for release 1.2.1

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#636 - rm large files from package

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#635 - fix for 1.2.1

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#634 - ver1.2.1 updates

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#633 - specify n_files for split in multisession_registration

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#632 - updates for ver1.2.1

Pull Request - State: closed - Opened by ReiHashimoto 10 months ago

#631 - ver1.2.0 release

Pull Request - State: closed - Opened by ReiHashimoto 11 months ago

#630 - build for release 1.2.0

Pull Request - State: closed - Opened by ReiHashimoto 11 months ago

#629 - fix microscope reader settings

Pull Request - State: closed - Opened by ReiHashimoto 11 months ago

#628 - add cnmf quality params

Pull Request - State: closed - Opened by ReiHashimoto 11 months ago

#627 - fix issues on release check and update docs

Pull Request - State: closed - Opened by ReiHashimoto 11 months ago

#626 - Prepare for ver 1.2.0 release

Pull Request - State: closed - Opened by ReiHashimoto 11 months ago

#625 - Feature/update pytest config

Pull Request - State: closed - Opened by itutu-tienday 12 months ago

#624 - Bump alembic from 1.9.2 to 1.13.1

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#623 - Merge release ver1.1.0

Pull Request - State: closed - Opened by ReiHashimoto about 1 year ago

#622 - build for release 1.1.0

Pull Request - State: closed - Opened by ReiHashimoto about 1 year ago

#621 - Feature/docker image verup

Pull Request - State: closed - Opened by itutu-tienday about 1 year ago

#620 - fix errors on release check

Pull Request - State: closed - Opened by ReiHashimoto about 1 year ago

#619 - merge barebone develop-main

Pull Request - State: closed - Opened by ReiHashimoto about 1 year ago

#618 - Cannot use caiman_cnmf with suite2p data

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#617 - HDF5 file inputs

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#616 - align_by_chan not possible to use

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#615 - Update fastapi requirement from ==0.99.* to >=0.99,<0.106

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#614 - CaImAn parameters

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#613 - Probably unneeded parameters in suite2p_file nodes

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement, backend

#612 - Deleting ROIs doesn't change analysis

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: bug

#611 - Caiman_mc rois ??

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: bug

#610 - ETA heatmap cannot select ROIs

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#609 - Visualise Suite2p_registration output

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#608 - Bump actions/setup-python from 4 to 5

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#607 - Bump liskin/gh-problem-matcher-wrap from 2.0.2 to 3.0.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#606 - Make clear which node each algorithm is working on

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#605 - Feature/add roi edit UI adjust

Pull Request - State: closed - Opened by itutu-tienday about 1 year ago

#604 - Cell ID turns to -1 when selecting

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#603 - Cannot add ROIs from non_cell_roi

Issue - State: open - Opened by milesOIST about 1 year ago - 1 comment
Labels: bug, enhancement, frontend

#602 - Delete ROIs from traces / Automatically select ROIs in map view when selecting fluorescence

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: enhancement

#601 - Bump alembic from 1.9.2 to 1.13.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#600 - Adding new data requires rerun

Issue - State: open - Opened by milesOIST about 1 year ago

#599 - LCCD RoiData cannot be used

Issue - State: open - Opened by milesOIST about 1 year ago
Labels: bug

#598 - Feature/add sample data

Pull Request - State: closed - Opened by milesOIST about 1 year ago

#597 - Update mac.md

Pull Request - State: open - Opened by josh-oloro about 1 year ago - 1 comment

#596 - ETA plot with correct xaxis limit

Issue - State: open - Opened by milesOIST about 1 year ago

#595 - Requested feature: Data Selector

Issue - State: open - Opened by milesOIST about 1 year ago

#594 - CCA should take any 2 matrices

Issue - State: open - Opened by milesOIST about 1 year ago

#593 - Rename: ref image

Issue - State: closed - Opened by milesOIST about 1 year ago - 1 comment
Labels: frontend

#592 - Request function: plot csv behavioural data

Issue - State: open - Opened by milesOIST about 1 year ago

#591 - PCA issue

Issue - State: open - Opened by milesOIST about 1 year ago - 1 comment

#590 - ETA visualisation for different event types

Issue - State: closed - Opened by milesOIST over 1 year ago

#589 - ETA mean over all data

Issue - State: closed - Opened by milesOIST over 1 year ago

#588 - ROI algorithm outputs

Issue - State: open - Opened by milesOIST over 1 year ago

#587 - ETA plot overall mean

Issue - State: open - Opened by milesOIST over 1 year ago

#586 - Feature/precommit codespell

Pull Request - State: closed - Opened by milesOIST over 1 year ago - 1 comment

#585 - Bump alembic from 1.9.2 to 1.12.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#584 - [128] add caiman multisession cell extraction

Issue - State: open - Opened by ReiHashimoto over 1 year ago

#583 - Update fastapi requirement from ==0.99.* to >=0.99,<0.105

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#582 - [122] CaImAn preprocess/deconvolve/evaluation

Issue - State: open - Opened by ReiHashimoto over 1 year ago

#581 - [133] params sorted after reproduce

Issue - State: closed - Opened by ReiHashimoto over 1 year ago - 1 comment

#580 - [107] Error in csv file with header

Issue - State: closed - Opened by ReiHashimoto over 1 year ago - 1 comment

#579 - [106] Error when using 1D data as Input in HDF5 node

Issue - State: closed - Opened by ReiHashimoto over 1 year ago - 1 comment

#578 - Add support for OPTINIST_DIR data migration

Issue - State: closed - Opened by ReiHashimoto over 1 year ago - 1 comment
Labels: backend

#577 - Release 2023/09/29 version 1.0.1

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#576 - build frontend for release 1.0.1

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#575 - fix caiman roi_edit

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#574 - Hotfix/update docs

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#573 - add plot metadata

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#572 - prepare for release

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#571 - pop existing value

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#570 - rename download

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#569 - fix errors on ROI edit

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#568 - fix visualize crash

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#567 - Hotfix/update docs

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#566 - set default values for frontend env

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#565 - Update fastapi requirement from ==0.99.* to >=0.99,<0.104

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#564 - Bump pynwb from 2.2.0 to 2.5.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#563 - Bump sphinx from 7.1.2 to 7.2.6

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#562 - Bump pymysql from 1.0.2 to 1.1.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#561 - Bump alembic from 1.9.2 to 1.12.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#560 - update how to run docker

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#559 - fix errors on built package

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#558 - fix tests

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#557 - Release 20230927(Version1.0.0)

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#556 - merge updates from barebone-studio

Pull Request - State: closed - Opened by ReiHashimoto over 1 year ago

#555 - limit frames on timeseries plot

Issue - State: open - Opened by ReiHashimoto over 1 year ago

#554 - added dpca

Pull Request - State: closed - Opened by ykyamane over 1 year ago - 1 comment

#553 - 稀に発生するlogエラー

Issue - State: closed - Opened by emuemuJP over 1 year ago

#552 - codespell: config, workflow + some typos fixed using codespell.

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 1 comment

GitHub / oist/optinist issues and pull requests