ohdsi/oncologywg issues and pull requests

#47 - Update ETL documentation to reflect parent/child relationships.

Issue - State: closed - Opened by mgurley over 5 years ago

#47 - Update ETL documentation to reflect parent/child relationships.

Issue - State: closed - Opened by mgurley over 5 years ago

#46 - Beta test ETLing oncology diagnosis, diagnosis modifiers and oncolgy drug treatments.

Issue - State: closed - Opened by mgurley over 5 years ago - 1 comment

#46 - Beta test ETLing oncology diagnosis, diagnosis modifiers and oncolgy drug treatments.

Issue - State: closed - Opened by mgurley over 5 years ago - 1 comment

#45 - Create DDL to support numeric vocabulary concepts.

Issue - State: closed - Opened by mgurley over 5 years ago

#45 - Create DDL to support numeric vocabulary concepts.

Issue - State: closed - Opened by mgurley over 5 years ago

#44 - Modify DDL SQL to conform to polymoprhic file naming decision.

Issue - State: closed - Opened by mgurley over 5 years ago

#44 - Modify DDL SQL to conform to polymoprhic file naming decision.

Issue - State: closed - Opened by mgurley over 5 years ago

#43 - Review and provide feedback on ingestion of hemonc.org into the OMOP vocabulary tables.

Issue - State: closed - Opened by mgurley over 5 years ago

#43 - Review and provide feedback on ingestion of hemonc.org into the OMOP vocabulary tables.

Issue - State: closed - Opened by mgurley over 5 years ago

#42 - Review and provide feedback on ingestion of NAACCR into staging area.

Issue - State: closed - Opened by mgurley over 5 years ago

#42 - Review and provide feedback on ingestion of NAACCR into staging area.

Issue - State: closed - Opened by mgurley over 5 years ago

#41 - Ingest Hemonc.org into the OMOP vocabulary tables.

Issue - State: closed - Opened by mgurley over 5 years ago - 1 comment

#41 - Ingest Hemonc.org into the OMOP vocabulary tables.

Issue - State: closed - Opened by mgurley over 5 years ago - 1 comment

#40 - Submit proposal to support numeric vocabulary concepts to CDM and Vocabulary Development Working Group.

Issue - State: open - Opened by mgurley over 5 years ago - 9 comments
Labels: CDM/Vocabulary Subgroup

#39 - Curate the parent NAACCR item for NAACCR items.

Issue - State: closed - Opened by mgurley over 5 years ago

#39 - Curate the parent NAACCR item for NAACCR items.

Issue - State: closed - Opened by mgurley over 5 years ago

#38 - Curate the parent Date NAACCR item for NAACCR items.

Issue - State: closed - Opened by mgurley over 5 years ago

#38 - Curate the parent Date NAACCR item for NAACCR items.

Issue - State: closed - Opened by mgurley over 5 years ago

#37 - Curate NAACCR items in the 'None' domain into the 'Observation' and 'Meas Value' domains

Issue - State: closed - Opened by mgurley over 5 years ago

#37 - Curate NAACCR items in the 'None' domain into the 'Observation' and 'Meas Value' domains

Issue - State: closed - Opened by mgurley over 5 years ago

#36 - Curate date NAACCR items into Metadata domain.

Issue - State: closed - Opened by mgurley over 5 years ago

#36 - Curate date NAACCR items into Metadata domain.

Issue - State: closed - Opened by mgurley over 5 years ago

#35 - Decide on the domain assignment of 'Hemonc.org' Regimen and Regimen Category concepts.

Issue - State: closed - Opened by mgurley almost 6 years ago

#34 - How do we handle different versions of NAACCR?

Issue - State: closed - Opened by mgurley almost 6 years ago - 5 comments
Labels: NAACCR

#34 - How do we handle different versions of NAACCR?

Issue - State: closed - Opened by mgurley almost 6 years ago - 5 comments
Labels: NAACCR

#33 - Should we record dates as a separate measurement record.(e.g. Date regional lymph node dissection NAACCR #682)?

Issue - State: closed - Opened by mgurley almost 6 years ago - 2 comments
Labels: NAACCR

#33 - Should we record dates as a separate measurement record.(e.g. Date regional lymph node dissection NAACCR #682)?

Issue - State: closed - Opened by mgurley almost 6 years ago - 2 comments
Labels: NAACCR

#32 - How should we handle NAACCR provenance concepts?

Issue - State: closed - Opened by mgurley almost 6 years ago - 2 comments
Labels: NAACCR

#32 - How should we handle NAACCR provenance concepts?

Issue - State: closed - Opened by mgurley almost 6 years ago - 2 comments
Labels: NAACCR

#31 - How should we handle versions of staging variables? For both TNM and AJCC variables?

Issue - State: closed - Opened by mgurley almost 6 years ago - 4 comments
Labels: NAACCR

#31 - How should we handle versions of staging variables? For both TNM and AJCC variables?

Issue - State: closed - Opened by mgurley almost 6 years ago - 4 comments
Labels: NAACCR

#30 - How should we handle the different flavors of ‘Unknown’ within NAACCR: ingest or not ingest?

Issue - State: closed - Opened by mgurley almost 6 years ago - 11 comments
Labels: NAACCR

#29 - How should we handle 'Numeric' NAACCR items that define numeric ranges?

Issue - State: closed - Opened by mgurley almost 6 years ago - 15 comments
Labels: NAACCR

#29 - How should we handle 'Numeric' NAACCR items that define numeric ranges?

Issue - State: closed - Opened by mgurley almost 6 years ago - 15 comments
Labels: NAACCR

#28 - How should we handle long CONCEPT.concept_name entries that exceed 255 characters coming from NAACCR?

Issue - State: closed - Opened by mgurley almost 6 years ago - 3 comments
Labels: NAACCR

#28 - How should we handle long CONCEPT.concept_name entries that exceed 255 characters coming from NAACCR?

Issue - State: closed - Opened by mgurley almost 6 years ago - 3 comments
Labels: NAACCR

#27 - How should we handle long CONCEPT.concept_code entries that exceed 50 characters coming from NAACCR?

Issue - State: closed - Opened by mgurley almost 6 years ago - 3 comments
Labels: NAACCR

#27 - How should we handle long CONCEPT.concept_code entries that exceed 50 characters coming from NAACCR?

Issue - State: closed - Opened by mgurley almost 6 years ago - 3 comments
Labels: NAACCR

#26 - Curate NAACCR Items/Item Codes and OMOP domains.

Issue - State: closed - Opened by mgurley almost 6 years ago - 2 comments
Labels: NAACCR

#26 - Curate NAACCR Items/Item Codes and OMOP domains.

Issue - State: closed - Opened by mgurley almost 6 years ago - 2 comments
Labels: NAACCR

#25 - Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers

Issue - State: closed - Opened by rimusia about 6 years ago - 1 comment

#25 - Proposal for Ingestion of NAACCR into OMOP Vocabulary - Diagnostic Modifiers

Issue - State: closed - Opened by rimusia about 6 years ago - 1 comment

#24 - Update 'ETL Instructions for Mapping ICDO to SNOMED' to incldue NAACCR/Episode.

Issue - State: closed - Opened by mgurley about 6 years ago - 1 comment

#23 - Create DDL to support the Oncology Extension Proposal.

Issue - State: closed - Opened by mgurley about 6 years ago - 6 comments
Labels: Modelling

#23 - Create DDL to support the Oncology Extension Proposal.

Issue - State: closed - Opened by mgurley about 6 years ago - 6 comments
Labels: Modelling

#22 - Create documentation to support the Oncology Extension Proposal.

Issue - State: open - Opened by mgurley about 6 years ago - 1 comment
Labels: Documentation, Development Subgroup, Outreach/Research Subgroup

#21 - Add Episode Type concepts.

Issue - State: closed - Opened by mgurley about 6 years ago - 17 comments
Labels: CDM/Vocabulary Subgroup

#20 - Decide on naming of polymorphic columns in EPISODE_EVENT table.

Issue - State: closed - Opened by mgurley about 6 years ago - 1 comment
Labels: Modelling

#19 - Decide on convention whether linking between EPISODE and clinical events should happen at all levels or only at the leaf.

Issue - State: open - Opened by mgurley about 6 years ago
Labels: CDM/Vocabulary Subgroup, Modelling

#18 - Rimma's Housekeeping Tasks

Issue - State: closed - Opened by rimusia about 6 years ago - 3 comments

#17 - Suggest anchor code to be used in the OROT surgical vocabulary.

Issue - State: closed - Opened by mgurley about 6 years ago - 1 comment
Labels: OROT

#16 - Suggest anchor code to be used in the OROT radiation therapy vocabulary.

Issue - State: closed - Opened by mgurley about 6 years ago - 1 comment
Labels: OROT

#15 - Provide candidate mappings of NAACCR treatment variables/codes to OROT 'SEER*Rx Category' entries.

Issue - State: closed - Opened by mgurley about 6 years ago - 2 comments
Labels: OROT

#14 - Add formal ontology properties to OROT.

Issue - State: closed - Opened by mgurley about 6 years ago - 3 comments
Labels: OROT

#13 - Decide on whether to create a new Treatment domain, reuse the Procedure and Drug domains, or create a new Procedure/Treatment domain.

Issue - State: closed - Opened by mgurley about 6 years ago - 22 comments
Labels: CDM/Vocabulary Subgroup, NAACCR

#12 - Add concepts, domains and concept classes for EPISODE table.

Issue - State: closed - Opened by mgurley about 6 years ago - 4 comments
Labels: CDM/Vocabulary Subgroup

#11 - Add 'Registry' type concept to all domains.

Issue - State: closed - Opened by mgurley about 6 years ago - 9 comments
Labels: CDM/Vocabulary Subgroup, Fix

#10 - Map Breast NAACCR to Breast Nebraska Lexicon.

Issue - State: closed - Opened by mgurley about 6 years ago - 1 comment
Labels: CDM/Vocabulary Subgroup, NAACCR

#9 - Map NAACCR modifiers to a standardized vocabularies. Maybe Nebrasaka Lexicon.

Issue - State: closed - Opened by mgurley about 6 years ago - 10 comments
Labels: CDM/Vocabulary Subgroup, NAACCR

#8 - Decide how to encode the relationship within the OHDSI vocabulary tables the list of possbile condition modifiers for a given anatomic site(s).

Issue - State: closed - Opened by mgurley about 6 years ago - 2 comments
Labels: CDM/Vocabulary Subgroup

GitHub / ohdsi/oncologywg issues and pull requests