oda-hub/nb2workflow issues and pull requests

#112 - fix resource name compatibility

Pull Request - State: closed - Opened by dsavchenko over 1 year ago

#111 - Running long tasks on MMODA

Issue - State: closed - Opened by dsavchenko over 1 year ago - 7 comments

#110 - add annotation for requesting local database

Issue - State: closed - Opened by volodymyrss over 1 year ago

#109 - try to reduce overhead

Issue - State: open - Opened by volodymyrss over 1 year ago

#108 - in deploy: check temp dir name to be compatible with RFC 1123

Issue - State: closed - Opened by dsavchenko over 1 year ago

#107 - Use renku base image

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 5 comments

#106 - customize nb2w cache

Pull Request - State: closed - Opened by volodymyrss over 1 year ago - 1 comment

#105 - dockerfile content in build exception

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 1 comment

#104 - fix micromamba no channel

Pull Request - State: closed - Opened by dsavchenko over 1 year ago

#103 - ignore 'kubectl logs job/kaniko-build-*' error

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 2 comments

#102 - nb2galaxy prototype

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 19 comments

#101 - Better handle kaniko build failures

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 2 comments

#100 - add build-essential and wget to container

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 2 comments

#99 - Add build-essential in the nb2deploy container

Issue - State: closed - Opened by dsavchenko over 1 year ago

#98 - Inconsistent behavior between sync and async when request contains unknown argument

Issue - State: open - Opened by dsavchenko over 1 year ago

#97 - Automatically wrap some outputs as oda_api product

Issue - State: open - Opened by dsavchenko over 1 year ago

#96 - initialize conda

Pull Request - State: closed - Opened by volodymyrss over 1 year ago - 10 comments

#95 - it should be also allowed to run job container from service

Issue - State: open - Opened by volodymyrss over 1 year ago

#94 - add conda initialization

Issue - State: closed - Opened by volodymyrss over 1 year ago

#93 - rdflib dependency

Pull Request - State: closed - Opened by dsavchenko over 1 year ago

#92 - fix nbconvert version

Pull Request - State: closed - Opened by burnout87 over 1 year ago - 6 comments

#91 - contextfilter missing dependency ?

Issue - State: closed - Opened by burnout87 over 1 year ago - 6 comments

#90 - Fallback on odahub type

Pull Request - State: closed - Opened by burnout87 over 1 year ago - 1 comment

#89 - Watch deployment status. Configurable nb2w version in container.

Pull Request - State: closed - Opened by dsavchenko over 1 year ago - 1 comment

#88 - make nb2service work without rdf extra

Issue - State: closed - Opened by volodymyrss over 1 year ago - 3 comments

#87 - Clarify extras dependencies

Issue - State: closed - Opened by dsavchenko over 1 year ago - 1 comment

#86 - Update python-publish.yml

Pull Request - State: closed - Opened by volodymyrss over 1 year ago

#85 - add nb2galaxy

Issue - State: closed - Opened by volodymyrss over 1 year ago

#84 - different push action

Pull Request - State: closed - Opened by volodymyrss over 1 year ago

#83 - fix bump action

Issue - State: closed - Opened by volodymyrss over 1 year ago - 3 comments

#82 - Python type to owl type

Pull Request - State: closed - Opened by burnout87 over 1 year ago - 1 comment

#81 - Include outputs and default values by nb2rdf

Pull Request - State: closed - Opened by burnout87 over 1 year ago - 1 comment

#80 - filename pattern

Pull Request - State: closed - Opened by dsavchenko almost 2 years ago - 4 comments

#79 - Better handle kaniko build timeout and container build errors

Issue - State: closed - Opened by dsavchenko almost 2 years ago

#78 - Initialise lfs

Pull Request - State: closed - Opened by dsavchenko almost 2 years ago - 2 comments

#77 - lfs

Pull Request - State: closed - Opened by dsavchenko almost 2 years ago

#76 - namespace and small readme

Pull Request - State: closed - Opened by volodymyrss almost 2 years ago

#75 - fetch lfs only upon run

Issue - State: open - Opened by volodymyrss almost 2 years ago

#74 - deploy with a PV attached to the place where workflows are run

Issue - State: closed - Opened by volodymyrss almost 2 years ago - 2 comments

#73 - do we allow git-lfs in renku repo when building container ?

Issue - State: closed - Opened by dsavchenko almost 2 years ago - 6 comments

#72 - use mmoda.yaml to select notebooks for service

Issue - State: closed - Opened by volodymyrss almost 2 years ago - 1 comment

#71 - dependency Issue in python3.10 : owlready2,jupyter_contrib_nbextensions,dispatcher_plugin_nb2workflow

Issue - State: open - Opened by ferrigno almost 2 years ago - 3 comments

#70 - kaniko to build container in-cluster

Pull Request - State: closed - Opened by dsavchenko almost 2 years ago - 1 comment

#69 - make sure nb2rdf returns outputs and default values

Issue - State: closed - Opened by volodymyrss almost 2 years ago - 2 comments

#68 - make sure nb2rdf returns default values

Issue - State: open - Opened by volodymyrss almost 2 years ago

#67 - Update README.md

Pull Request - State: closed - Opened by volodymyrss almost 2 years ago

#66 - Revert "Create python-publish.yml"

Pull Request - State: closed - Opened by volodymyrss almost 2 years ago

#65 - Create python-publish.yml

Pull Request - State: closed - Opened by volodymyrss almost 2 years ago - 2 comments

#64 - Trailing dots

Pull Request - State: closed - Opened by volodymyrss almost 2 years ago

#63 - Trailing dot in annotation breaks extraction

Issue - State: closed - Opened by dsavchenko almost 2 years ago

#62 - deal with https records

Issue - State: open - Opened by volodymyrss almost 2 years ago

#61 - fix typing annotation -> Dict

Pull Request - State: closed - Opened by dsavchenko almost 2 years ago - 2 comments

#60 - Too strict type checks for types allowed by annotations. Inconsistent behavior between sync and async

Issue - State: closed - Opened by dsavchenko almost 2 years ago

#59 - used-defined class-oriented ontology

Pull Request - State: closed - Opened by volodymyrss almost 2 years ago - 8 comments

#58 - reconcile post 3.6 type annotations with oda type

Issue - State: open - Opened by ferrigno about 2 years ago
Labels: enhancement

#57 - optional json flasgger

Pull Request - State: closed - Opened by volodymyrss about 2 years ago - 1 comment

#56 - missing requirement flasgger

Issue - State: closed - Opened by ferrigno about 2 years ago - 2 comments

#55 - only python 3.9

Pull Request - State: closed - Opened by volodymyrss about 2 years ago

#54 - Adding tags to be extracted for specific astrophysical source.

Issue - State: closed - Opened by ferrigno about 2 years ago - 3 comments
Labels: enhancement

#53 - python 3.8 not compatible

Issue - State: closed - Opened by ferrigno about 2 years ago

#52 - optionally store large outputs outside of the notebook

Pull Request - State: closed - Opened by volodymyrss about 2 years ago

#51 - Optionall store large outputs elsewhere

Pull Request - State: closed - Opened by volodymyrss about 2 years ago

#50 - Change rdf:type to rdfs:subClassOf in extra_ttl

Issue - State: closed - Opened by dsavchenko about 2 years ago - 2 comments

#49 - recovered output behavior

Pull Request - State: closed - Opened by volodymyrss about 2 years ago - 1 comment

#48 - Backward-incompatible changes in owl_type

Issue - State: closed - Opened by dsavchenko about 2 years ago - 10 comments

#47 - add optional run with renku

Issue - State: open - Opened by volodymyrss about 2 years ago

#46 - Turtle annotations, workflow validation

Pull Request - State: closed - Opened by volodymyrss about 2 years ago - 2 comments

#45 - parse turtle in annotation

Issue - State: closed - Opened by volodymyrss about 2 years ago

#44 - Allow encoding oda data products

Pull Request - State: closed - Opened by dsavchenko about 2 years ago - 3 comments

#43 - requirements conflict (flask) in a custom environment

Issue - State: open - Opened by ferrigno about 2 years ago - 6 comments
Labels: enhancement

#42 - Probably makes sense to use CustomJSONEncoder from oda_api (after it being moved there from dispatcher)

Issue - State: closed - Opened by dsavchenko about 2 years ago - 9 comments

#40 - notebook_patterns is not used in deploy.py

Issue - State: closed - Opened by dsavchenko over 2 years ago - 1 comment

#39 - return renku kg

Issue - State: open - Opened by volodymyrss over 2 years ago

#38 - store the executions to kg

Issue - State: open - Opened by volodymyrss over 2 years ago

#37 - convert annotations to 'canonical' form

Issue - State: closed - Opened by dsavchenko over 2 years ago

#36 - convert annotations to 'canonical' form

Issue - State: closed - Opened by dsavchenko over 2 years ago

#35 - parse astropy types in input/output

Issue - State: open - Opened by volodymyrss over 2 years ago

#34 - nbrun issues a warning on renku lab

Issue - State: closed - Opened by andriineronov over 2 years ago - 3 comments

#33 - nbrun fails

Issue - State: closed - Opened by andriineronov over 2 years ago - 6 comments

#32 - support multiple types for parameter

Issue - State: closed - Opened by volodymyrss over 2 years ago

#31 - Mmoda validation

Pull Request - State: closed - Opened by volodymyrss over 2 years ago - 6 comments

#30 - add parsing of output with oda_api

Issue - State: closed - Opened by volodymyrss over 2 years ago

#29 - Absolution path for notebooks

Pull Request - State: closed - Opened by volodymyrss over 2 years ago - 1 comment

#28 - /api/v1.0/options return 500 when notebook is executing in async

Issue - State: closed - Opened by dsavchenko over 2 years ago - 3 comments

#27 - finish and explain functionality to publish workflow at renkulab and register

Issue - State: open - Opened by volodymyrss over 2 years ago

#26 - add pv data

Issue - State: open - Opened by volodymyrss almost 3 years ago

#25 - make cell-by-cell progress messages

Issue - State: closed - Opened by volodymyrss almost 3 years ago - 6 comments

#24 - add extra data option

Issue - State: open - Opened by volodymyrss almost 3 years ago

#23 - add functionality to create chart and maybe configure plugin

Issue - State: closed - Opened by volodymyrss about 3 years ago

#22 - Correctly cast boolean parameters

Pull Request - State: closed - Opened by dsavchenko about 3 years ago - 1 comment

#21 - boolean parameters can't be set to false

Issue - State: closed - Opened by dsavchenko about 3 years ago - 1 comment

#20 - Avoid callback url when building a cache key for the result of the AsyncWorker

Pull Request - State: closed - Opened by dsavchenko about 3 years ago - 1 comment

#19 - make an option to produce call-back

Issue - State: closed - Opened by volodymyrss about 3 years ago

#18 - make a simple streamlit wrapper

Issue - State: closed - Opened by volodymyrss over 3 years ago

#17 - Add build arguments to allow using repository accessed through a GITLAB Token

Pull Request - State: closed - Opened by ferrigno over 3 years ago - 1 comment
Labels: enhancement

#16 - annotations to describe dependencies on services: critical and optional

Issue - State: closed - Opened by volodymyrss almost 4 years ago

#15 - Develop

Pull Request - State: closed - Opened by volodymyrss almost 4 years ago

#14 - Develop

Pull Request - State: closed - Opened by volodymyrss almost 4 years ago - 2 comments

#13 - Bugfix/parameterparsing

Pull Request - State: closed - Opened by volodymyrss almost 4 years ago - 3 comments

#12 - actions

Pull Request - State: closed - Opened by volodymyrss almost 4 years ago - 3 comments

GitHub / oda-hub/nb2workflow issues and pull requests