ococrook/hdxstats issues and pull requests

#45 - Update functionalAnalysis-plots.R

Pull Request - State: closed - Opened by nlgittens over 1 year ago - 1 comment

#44 - hdxdifference function - a suggestion

Issue - State: closed - Opened by nlgittens almost 2 years ago - 2 comments

#43 - hdxdifference p-value signs

Issue - State: closed - Opened by nlgittens about 2 years ago - 1 comment

#42 - Residue start and end in ComputeAverageMap function

Issue - State: closed - Opened by nlgittens about 2 years ago - 1 comment

#41 - Replace use of print with `rlog` functions for baseline `hdxstats` modules. Assign: @ococrook

Issue - State: open - Opened by broncio123 about 2 years ago

#40 - Replace the use of slots with Accessors, as suggested in Bioconductor guidelines. Assign: @broncio123

Issue - State: closed - Opened by broncio123 about 2 years ago

#39 - xticklabels in manhattan plot now showing single residue numbers instead of an interval

Issue - State: closed - Opened by broncio123 about 2 years ago
Labels: bug, code-review

#38 - Outstanding issues for HDX streamline features

Issue - State: open - Opened by broncio123 over 2 years ago - 3 comments
Labels: code-review

#37 - plotEpitopeMap peptides too long

Issue - State: closed - Opened by nlgittens over 2 years ago - 1 comment

#36 - processFunctional error

Issue - State: closed - Opened by nlgittens over 2 years ago - 2 comments

#35 - object undefined in hdxdifference function

Issue - State: closed - Opened by broncio123 over 2 years ago - 3 comments

#34 - Is hmpplot functional?

Issue - State: closed - Opened by nlgittens over 2 years ago - 1 comment

#33 - swapped print with return in foresplot function

Pull Request - State: closed - Opened by broncio123 over 2 years ago

#32 - swapped print with return in foresplot function

Pull Request - State: closed - Opened by broncio123 over 2 years ago

#31 - Add routines for normalisation by time intercept and 'undeuterated' peptide mass into normalisehdx

Issue - State: closed - Opened by broncio123 over 2 years ago - 2 comments
Labels: enhancement

#30 - small fix

Pull Request - State: closed - Opened by broncio123 over 2 years ago

#29 - small fix

Pull Request - State: closed - Opened by broncio123 over 2 years ago

#28 - Add residue numbers to average plots and heatmap plots

Issue - State: closed - Opened by broncio123 over 2 years ago - 1 comment
Labels: enhancement

#27 - volcanoe plot

Issue - State: open - Opened by ococrook almost 3 years ago

#26 - AAString + Start & End residues

Issue - State: closed - Opened by nlgittens almost 3 years ago - 2 comments

#25 - Develop olly

Pull Request - State: closed - Opened by broncio123 almost 3 years ago

#24 - Merge developOlly into develop

Pull Request - State: closed - Opened by broncio123 almost 3 years ago

#23 - FitUptakeKinetics - error messages

Issue - State: closed - Opened by nlgittens almost 3 years ago - 12 comments

#22 - Develop olly

Pull Request - State: closed - Opened by ococrook almost 3 years ago

#21 - bioconductor check

Issue - State: open - Opened by ococrook almost 3 years ago

#20 - manhattan documentation

Issue - State: closed - Opened by ococrook almost 3 years ago

#19 - update readme

Issue - State: closed - Opened by ococrook almost 3 years ago

#18 - pull request from main into Broncio's develop branch

Pull Request - State: closed - Opened by broncio123 almost 3 years ago

#17 - Unit testing (later)

Issue - State: closed - Opened by broncio123 almost 3 years ago
Labels: enhancement, code-review

#16 - Define additional features for developement (discussion)

Issue - State: open - Opened by broncio123 almost 3 years ago - 1 comment
Labels: enhancement, code-review

#15 - Vignette's content enhancements

Issue - State: open - Opened by broncio123 almost 3 years ago - 2 comments
Labels: documentation, code-review

#14 - Glossary (optional)

Issue - State: open - Opened by broncio123 almost 3 years ago
Labels: documentation, code-review

#13 - Add executing scripts as part of tutorials or examples of use

Issue - State: open - Opened by broncio123 almost 3 years ago
Labels: documentation, code-review

#12 - Fix documentation formatting

Issue - State: open - Opened by broncio123 almost 3 years ago
Labels: documentation, code-review

#11 - Vignettes should be broken down

Issue - State: open - Opened by broncio123 almost 3 years ago - 1 comment
Labels: documentation, code-review

#10 - Develop olly

Pull Request - State: closed - Opened by ococrook almost 3 years ago

#9 - 3D structure viewer

Issue - State: closed - Opened by ococrook about 3 years ago - 5 comments
Labels: enhancement

#8 - Manhatten plot - multiple charge states

Issue - State: open - Opened by nlgittens about 3 years ago - 8 comments

#7 - Residue plot colours

Issue - State: closed - Opened by ococrook about 3 years ago - 5 comments

#6 - Exporting results

Issue - State: closed - Opened by ococrook about 3 years ago - 2 comments

#5 - Heat map cosmetics

Issue - State: closed - Opened by nlgittens about 3 years ago - 1 comment

#4 - %D uptake vs #D uptake

Issue - State: closed - Opened by nlgittens about 3 years ago - 3 comments

#3 - Deuterium uptake plotting - linear vs semi-log

Issue - State: closed - Opened by nlgittens about 3 years ago - 3 comments

#2 - fix typo

Pull Request - State: closed - Opened by Adafede about 3 years ago - 1 comment

#1 - fix typo

Pull Request - State: closed - Opened by lgatto about 3 years ago - 1 comment

GitHub / ococrook/hdxstats issues and pull requests