obiba/opal issues and pull requests

#3816 - Question

Issue - State: closed - Opened by massej about 1 year ago - 2 comments

#3815 - [4.6.5] Migration of the identifiers database

Issue - State: open - Opened by tuxmaster5000 about 1 year ago
Labels: bug

#3814 - Tabular schema creation fails in MySQL/MariaDB due to SQL error

Issue - State: closed - Opened by ymarcon about 1 year ago - 4 comments
Labels: bug

#3813 - [4.6.4] Hibernate warnings(HHH90000022) about deprecated usages

Issue - State: closed - Opened by tuxmaster5000 about 1 year ago - 6 comments
Labels: bug

#3812 - [4.6.4] Many "Duplicate key" errors on start up and when importing data to an project

Issue - State: closed - Opened by tuxmaster5000 about 1 year ago - 13 comments
Labels: bug

#3811 - ERROR: LogManager is shutdown, no logging is possible !!!

Issue - State: open - Opened by djuarezgf about 1 year ago - 1 comment
Labels: bug

#3810 - Opal will not start with Java-11/17

Issue - State: open - Opened by tuxmaster5000 over 1 year ago - 5 comments
Labels: bug

#3809 - Unable to Access Opal in RStudio with Keycloak Credentials for Users Registered in Keycloak but Not in Opal

Issue - State: closed - Opened by arturofigueroabim over 1 year ago - 6 comments
Labels: question

#3808 - AUR Version

Issue - State: open - Opened by ParadaCarleton over 1 year ago - 1 comment

#3807 - Localized R attributes with newlines are truncated

Issue - State: closed - Opened by ymarcon over 1 year ago
Labels: bug

#3806 - Opal admin reports that "packages are inconsistent between the R servers" - probably false positive

Issue - State: open - Opened by fnwirth over 1 year ago

#3805 - Rserve service error when reading installed packages

Issue - State: closed - Opened by ymarcon over 1 year ago - 1 comment
Labels: bug

#3804 - Do not store opal.* R attributes as variable attributes

Issue - State: closed - Opened by ymarcon over 1 year ago
Labels: bug

#3803 - Add R/DataSHIELD activity tracking

Issue - State: closed - Opened by ymarcon over 1 year ago - 1 comment
Labels: new feature

#3802 - Install/update R package as a background task

Issue - State: closed - Opened by ymarcon over 1 year ago
Labels: improvement

#3801 - R error on table assignment

Issue - State: closed - Opened by ymarcon over 1 year ago - 1 comment
Labels: bug

#3800 - Replace highcharts by plotly

Issue - State: open - Opened by ymarcon over 1 year ago
Labels: task

#3799 - Upgrade or replace Momentjs

Issue - State: open - Opened by ymarcon over 1 year ago
Labels: task

#3798 - An unprivileged user has access to other projects’ names, table names and other user’s tasks

Issue - State: closed - Opened by esalehi92 over 1 year ago
Labels: improvement

#3797 - Security Problem with Writing RDS Files to Arbitrary Locations

Issue - State: closed - Opened by esalehi92 over 1 year ago
Labels: bug

#3796 - Problems with environment variable APP_URL

Issue - State: closed - Opened by djuarezgf over 1 year ago - 14 comments
Labels: bug, new feature

#3795 - Remove old R workspaces

Issue - State: closed - Opened by ymarcon over 1 year ago - 1 comment
Labels: improvement

#3794 - DataSHIELD activity logging

Pull Request - State: closed - Opened by ymarcon over 1 year ago

#3793 - Bump jetty-server from 9.4.48.v20220622 to 10.0.14

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#3792 - Bump spring-core from 5.3.26 to 5.3.27

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#3791 - Bump json from 20140107 to 20230227

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#3789 - problems importing SAS or SPSS data files

Issue - State: open - Opened by RHBara over 1 year ago - 3 comments

#3788 - Bump snakeyaml from 1.32 to 2.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#3787 - Bump jettison from 1.5.2 to 1.5.4

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#3786 - Bump json-smart from 2.3.1 to 2.4.9

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#3785 - Wrong character encoding when reading data from R server

Issue - State: closed - Opened by ymarcon over 1 year ago - 1 comment
Labels: bug

#3784 - Large binary values are broken at download

Issue - State: closed - Opened by ymarcon over 1 year ago - 1 comment
Labels: bug

#3783 - Bump commons-fileupload from 1.3.3 to 1.5

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#3782 - RServerManagerService: NullPointerException at start

Issue - State: closed - Opened by ymarcon almost 2 years ago
Labels: bug

#3781 - Default permissions on project folders in file system often result in accidental data availability

Issue - State: open - Opened by tombisho almost 2 years ago

#3780 - More information for system admins when DataSHIELD packages are being installed

Issue - State: open - Opened by tombisho almost 2 years ago - 4 comments

#3779 - Feature Compatibility for MongoDB

Issue - State: closed - Opened by ninbo525 almost 2 years ago - 4 comments

#3777 - Problem with hibernate_sequence in Opal 4.5.2/3

Issue - State: closed - Opened by harttigu almost 2 years ago - 8 comments
Labels: bug

#3776 - MongoDB 4.2 upgrade in Opal/Mica/Agate-Obiba

Issue - State: closed - Opened by ninbo525 almost 2 years ago - 3 comments

#3775 - 401 error with administrator user

Issue - State: closed - Opened by RonanMorgan almost 2 years ago - 4 comments

#3774 - Deactivate access to /WEB-INF/**

Issue - State: closed - Opened by fnwirth almost 2 years ago - 2 comments
Labels: improvement

#3773 - Bump jettison from 1.3.2 to 1.5.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#3772 - Bump spring-web from 5.3.22 to 6.0.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#3771 - Deleting Projects or Tables where IDs are not ObjectIds fails

Issue - State: closed - Opened by kazoompa almost 2 years ago

#3770 - Bump resteasy-jaxrs from 3.0.12.Final to 3.0.20.Final

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#3769 - Bump hsqldb from 2.3.3 to 2.7.1

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#3768 - Bump postgresql from 42.5.0 to 42.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#3767 - opal crash when upgrading

Issue - State: closed - Opened by oliviermattelaer about 2 years ago - 4 comments

#3766 - opal-server package not signed?

Issue - State: open - Opened by bjornwiberguuse about 2 years ago - 1 comment
Labels: task

#3765 - Bump jackson-databind from 2.13.4 to 2.13.4.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#3764 - Bump jettison from 1.3.2 to 1.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#3763 - Bump shiro-core from 1.9.1 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#3762 - name tables with spaces not possible using opalr

Issue - State: closed - Opened by ymarcon about 2 years ago
Labels: bug

#3761 - Bump protobuf-java from 2.5.0 to 3.16.3

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#3760 - Opal 4.5.0 with Google Datastore

Issue - State: closed - Opened by barbaraledoux about 2 years ago - 5 comments

#3759 - Opal 4.5.0 index error with Amazon DocumentDB

Issue - State: closed - Opened by jonathanmasseurca about 2 years ago - 5 comments
Labels: wontfix

#3758 - Intransparent installation procedure for R packages

Issue - State: closed - Opened by joerghenkebuero about 2 years ago - 1 comment

#3757 - Upgrade Spring, Hibernate, Database drivers and Shiro

Issue - State: closed - Opened by ymarcon over 2 years ago - 1 comment
Labels: task

#3756 - Setting an Opal logout redirect url

Issue - State: closed - Opened by paulusv over 2 years ago
Labels: new feature

#3755 - Bump postgresql from 42.3.4 to 42.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#3753 - After creating a project, I need to go back to the Projects page and then click on the project again to create a table

Issue - State: closed - Opened by tombisho over 2 years ago - 1 comment
Labels: improvement

GitHub / obiba/opal issues and pull requests