Ecosyste.ms: Issues

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GitHub / obiba/genobyte issues and pull requests

#40 - GEN-74: Rework the transposition process

Issue - State: closed - Opened by ymarcon about 17 years ago - 2 comments
Labels: improvement

#39 - GEN-63: Change Stats system to remove use of plain strings for inputParam / outputParam.

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: improvement

#38 - GEN-62: Consider refactoring the inconsistencies package to use the statistics package

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: improvement

#37 - GEN-61: BitVector does not respect the Comparable contract

Issue - State: open - Opened by ymarcon about 17 years ago - 2 comments
Labels: bug

#36 - GEN-58: Remove dependency on commons-digester

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: improvement

#35 - GEN-52: Filter and extraction of genomic information in VCF

Issue - State: open - Opened by ymarcon about 8 years ago
Labels: user story

#34 - GEN-51: Replace bitwise database engine

Issue - State: open - Opened by ymarcon about 8 years ago
Labels: user story

#33 - GEN-50: Allow executing a Query on other Field sources (ie: a StatsPool instance)

Issue - State: open - Opened by ymarcon about 17 years ago - 1 comment
Labels: new feature

#32 - GEN-49: Consider adding a NULL keyword and NullQuery in the QueryParser

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: improvement

#31 - GEN-48: Refactor Field, AbstractField and VolatileField

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: task

#30 - GEN-47: Integrate a generic VCF parser and analyzer

Issue - State: open - Opened by ymarcon about 8 years ago
Labels: user story

#29 - GEN-46: Move mock objects to the main API packages.

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: task

#28 - GEN-45: Remove dependency on iBatis DAO

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: task

#27 - GEN-44: Merge the two MockBitwiseStore objects

Issue - State: open - Opened by ymarcon about 17 years ago
Labels: improvement

#26 - GEN-43: Make a REST standalone application

Issue - State: open - Opened by ymarcon about 8 years ago
Labels: user story

#25 - GEN-42: bitwise.client and bitwise.genotype.cli should be merged

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#24 - GEN-41: BitwiseStoreUtil: Improve exists() method

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#23 - GEN-40: Move test fixtures (mock classes) into API codebase

Issue - State: closed - Opened by ymarcon about 16 years ago - 1 comment
Labels: improvement

#22 - GEN-39: Log output is not what it seems, and is not specific

Issue - State: closed - Opened by ymarcon about 16 years ago - 1 comment
Labels: bug

#20 - GEN-35: Filtering SNPs in Mendel report does not filter test count

Issue - State: closed - Opened by ymarcon almost 17 years ago - 1 comment
Labels: bug

#19 - GEN-34: Add ability to filter SNPs and Samples to inconsistency reports.

Issue - State: closed - Opened by ymarcon almost 17 years ago - 2 comments
Labels: new feature

#18 - GEN-33: Add a page describing the Query Syntax.

Issue - State: closed - Opened by ymarcon almost 17 years ago - 2 comments
Labels: task

#17 - GEN-32: Unit tests fail on windows

Issue - State: closed - Opened by ymarcon almost 17 years ago - 2 comments
Labels: bug

#16 - GEN-31: Unit tests fail on Windows

Issue - State: open - Opened by ymarcon almost 17 years ago
Labels: bug

#15 - GEN-30: Mendelian inconsistencies calculation bug for trios

Issue - State: closed - Opened by ymarcon almost 17 years ago - 3 comments
Labels: bug

#14 - GEN-29: The --load option doesn't work in Windows.

Issue - State: closed - Opened by ymarcon almost 17 years ago - 2 comments
Labels: bug

#13 - GEN-28: Default Dictionaries for any given class should be definable in a properties file.

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: new feature

#12 - GEN-27: Use long as unique key for BitVector storage

Issue - State: closed - Opened by ymarcon about 17 years ago - 1 comment
Labels: improvement

#11 - GEN-18: Formalize the concept of Key Cache instead of relying on wrapping RecordManagers

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#10 - GEN-15: ResultVector NULL results handling should be improved.

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#9 - GEN-12: It would be nice to be able to setup more than one 'repository' per VM instance.

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#8 - GEN-11: Field and Dictionary coupling

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: task

#7 - GEN-10: Lookup method of dictionary must return vectors of contant size

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#5 - GEN-8: Field should not require that all zeroes represent NULL

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: improvement

#4 - GEN-7: write a first draft of a paper on genotype

Issue - State: closed - Opened by ymarcon over 17 years ago - 1 comment
Labels: task

#3 - GEN-6: Add features to allow handling markers with more than two alleles (ie:A/C/T)

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: new feature

#2 - GEN-3: Add feature to allow persisting genotype inconsistencies in a GenoByte store.

Issue - State: open - Opened by ymarcon over 17 years ago
Labels: new feature

#1 - Key-value store is accessible through Service Provider Interface (SPI)

Pull Request - State: closed - Opened by ymarcon about 8 years ago