noamteyssier/sgcount issues and pull requests

#80 - 79 warn user which sgrna is missing from the gene map 1

Pull Request - State: closed - Opened by noamteyssier 26 days ago - 1 comment

#79 - warn user which sgRNA is missing from the gene map

Issue - State: closed - Opened by noamteyssier 26 days ago
Labels: enhancement

#78 - Update hashbrown requirement from 0.14.3 to 0.15.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies

#77 - Bump the ndarray-packages group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#76 - 74 label the files as basenames by default

Pull Request - State: closed - Opened by noamteyssier 10 months ago - 1 comment

#75 - propagate errors through the iterators

Issue - State: open - Opened by noamteyssier 10 months ago
Labels: enhancement

#74 - label the files as basenames by default

Issue - State: closed - Opened by noamteyssier 10 months ago
Labels: enhancement

#73 - use needletail for fx record parsing

Issue - State: open - Opened by noamteyssier 10 months ago
Labels: enhancement

#72 - Update logo.svg

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#71 - 70 better error handling when sequences have undersized lengths

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#70 - Better error handling when sequences have undersized lengths

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#69 - 68 allow for multiple sized sequences

Pull Request - State: closed - Opened by noamteyssier over 1 year ago - 1 comment

#68 - Allow for multiple sized sequences

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#67 - 51 report summary statistics

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#66 - 65 add option for removing full zero results

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#65 - add option for removing full-zero results

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#64 - bump version

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#63 - broken link

Issue - State: closed - Opened by abearab over 1 year ago

#62 - 61 increase testing coverage

Pull Request - State: closed - Opened by noamteyssier almost 2 years ago

#61 - increase testing coverage

Issue - State: closed - Opened by noamteyssier almost 2 years ago
Labels: testing

#60 - 59 better error handling for over length sequence size in library

Pull Request - State: closed - Opened by noamteyssier almost 2 years ago

#59 - better error handling for over-length sequence size in library

Issue - State: closed - Opened by noamteyssier almost 2 years ago
Labels: enhancement

#58 - fix bug in docs for multiple sgrna => same gene names

Issue - State: open - Opened by noamteyssier about 2 years ago

#57 - Errors for multi-spacer library

Issue - State: closed - Opened by abearab about 2 years ago - 1 comment

#56 - 55 update toml to use exact version numbers

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#55 - update toml to use exact version numbers

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug

#54 - 53 remove example generation script from repo

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#53 - Remove example generation script from repo

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: invalid

#52 - 48 create a better readme

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#51 - Report Summary Statistics

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#50 - Install within `conda` environment

Issue - State: closed - Opened by abearab over 2 years ago - 1 comment

#49 - Error `ndarray: index out of bounds`

Issue - State: closed - Opened by abearab over 2 years ago - 4 comments

#48 - Create a better readme

Issue - State: closed - Opened by noamteyssier over 2 years ago - 1 comment
Labels: documentation

#47 - 45 check for one position off

Pull Request - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#46 - 43 bug in output with multiple files

Pull Request - State: closed - Opened by noamteyssier over 2 years ago - 1 comment

#45 - check for one-position off

Issue - State: closed - Opened by noamteyssier over 2 years ago - 1 comment
Labels: enhancement

#44 - modify to accept CRISPR v3 libraries

Issue - State: open - Opened by noamteyssier over 2 years ago
Labels: enhancement

#43 - bug in output with multiple files

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: bug

#42 - 41 set exact matching as default

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#41 - set exact matching as default

Issue - State: closed - Opened by noamteyssier over 2 years ago

#40 - 36 add option for sgrna to gene table

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#39 - 38 update with pedantic clippy linting

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#38 - update with pedantic clippy linting

Issue - State: closed - Opened by noamteyssier over 2 years ago

#37 - 28 perform entropy and offset matching for each sample independently

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#36 - add option for sgrna to gene table

Issue - State: closed - Opened by noamteyssier over 2 years ago

#35 - 34 measuring linting errors

Pull Request - State: closed - Opened by noamteyssier over 2 years ago - 1 comment

#34 - measuring linting errors

Issue - State: closed - Opened by noamteyssier over 2 years ago

#33 - replace hash with fxhash

Issue - State: closed - Opened by noamteyssier over 2 years ago

#32 - 31 update fxread usage for 02

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#31 - Update fxread usage for 0.2

Issue - State: closed - Opened by noamteyssier over 2 years ago

#30 - 27 validate that all path names exist before starting run

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#29 - 14 add reverse complement functionality

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#28 - Perform entropy and offset matching for each sample independently

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#27 - validate that all path names exist before starting run

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: bug, enhancement

#26 - 25 remove trimmer

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#25 - Remove Trimmer

Issue - State: closed - Opened by noamteyssier over 2 years ago

#24 - 23 migrate from std hashmap and hashsets to ahash

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#23 - migrate from std hashmap and hashsets to ahash

Issue - State: closed - Opened by noamteyssier over 2 years ago

#22 - 21 catch when non unique sequences are found in the index

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#21 - catch when non-unique sequences are found in the index

Issue - State: closed - Opened by noamteyssier over 2 years ago

#20 - 18 implement individual file counters in parallel

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#19 - show total time elapsed when finished

Issue - State: closed - Opened by noamteyssier over 2 years ago

#18 - implement individual file counters in parallel

Issue - State: closed - Opened by noamteyssier over 2 years ago

#17 - 10 add progress bar functionality and optional quiet

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#16 - 10 add progress bar functionality and optional quiet

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#15 - 11 add offset calculation as subcommand

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#14 - Add reverse complement functionality

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#13 - 11 add offset calculation as subcommand

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#12 - 9 add documentation

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#11 - add offset calculation as subcommand

Issue - State: closed - Opened by noamteyssier over 2 years ago

#10 - add progress bar functionality and optional quiet

Issue - State: closed - Opened by noamteyssier over 2 years ago

#9 - Add documentation

Issue - State: closed - Opened by noamteyssier over 2 years ago

#8 - 7 replace hamming calculation with a permutation hash

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#7 - replace hamming calculation with a permutation hash

Issue - State: closed - Opened by noamteyssier over 2 years ago

#6 - 4 add testing suite

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#5 - 4 add testing suite

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#4 - add testing suite

Issue - State: closed - Opened by noamteyssier over 2 years ago

#3 - short circuit hamming distance calculation

Issue - State: closed - Opened by noamteyssier over 2 years ago - 1 comment

#2 - 1 add in hamming distance

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#1 - add in hamming distance

Issue - State: closed - Opened by noamteyssier over 2 years ago

GitHub / noamteyssier/sgcount issues and pull requests