noamteyssier/ggetrs issues and pull requests

#208 - build(deps): update polars requirement from 0.43.1 to 0.44.0

Pull Request - State: open - Opened by dependabot[bot] 20 days ago
Labels: dependencies

#205 - build(deps): update polars requirement from 0.42.0 to 0.43.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies

#204 - build(deps): update pyo3 requirement from 0.21.2 to 0.22.2

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies

#203 - 25 integration with string

Pull Request - State: closed - Opened by noamteyssier 2 months ago - 1 comment

#202 - Clippy and fmt

Pull Request - State: closed - Opened by noamteyssier 5 months ago - 1 comment

#201 - 200 secondary json parsing has no default and crashes queries

Pull Request - State: closed - Opened by pgrosjean 5 months ago

#200 - Secondary JSON parsing has no default and crashes queries

Issue - State: closed - Opened by pgrosjean 5 months ago - 1 comment
Labels: enhancement

#199 - Updated uniprot query to allow default empty responses.

Pull Request - State: closed - Opened by pgrosjean 5 months ago - 2 comments

#198 - Handling '<unnamed>' in ggetrs info

Issue - State: closed - Opened by parker-insitro 5 months ago - 1 comment
Labels: enhancement, uniprot

#197 - lookup symbol and lookup id as python functions

Issue - State: open - Opened by noamteyssier about 1 year ago
Labels: python-api, ensembl

#196 - 195 replace infinity in enrichr response when not using background

Pull Request - State: closed - Opened by noamteyssier about 1 year ago - 1 comment

#195 - Replace infinity in Enrichr response when not using Background

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: bug, enrichr

#194 - 193 fix macos installation from crates

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#193 - fix macos installation from crates

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: bug

#192 - 189 allow for background correction with enrichr api

Pull Request - State: closed - Opened by noamteyssier over 1 year ago - 1 comment

#191 - 190 set up pyproject for easier download from pypi

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#190 - set up pyproject for easier download from pypi

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: python-api

#189 - Allow for background correction with enrichr api

Issue - State: closed - Opened by noamteyssier over 1 year ago - 1 comment
Labels: enhancement, enrichr

#188 - 187 fix nested async bug with uniprot query

Pull Request - State: closed - Opened by noamteyssier over 1 year ago - 1 comment

#187 - fix nested async bug with uniprot query

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: bug, uniprot

#186 - 185 add flag for download for ggetrs ensembl ref

Pull Request - State: closed - Opened by noamteyssier over 1 year ago - 1 comment

#185 - Add flag for download for `ggetrs ensembl ref`

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#184 - 183 update ensembl version in testing

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#183 - update ensembl version in testing

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: ensembl, testing

#182 - 170 change argument name to translate for ggetrs seq

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#181 - hotfix duplicate introduction on site

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#180 - fix introduction on site that duplicates description

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#179 - 178 update site introduction page to mirror GitHub readme introduction

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#178 - update site introduction page to mirror github readme introduction

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#177 - 176 include citations of docs pages

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#176 - include citations of docs pages

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#175 - 172 update readme introduction

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#174 - 173 fix bug in light mode of documentation with custom theme

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#173 - fix bug in light mode of documentation with custom theme

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, documentation

#172 - update readme introduction

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#171 - include instructions for each database usage on ggetrs info docs page

Issue - State: open - Opened by noamteyssier about 2 years ago
Labels: documentation, enhancement

#170 - change argument name to translate for ggetrs seq

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, documentation

#169 - allow for ensembl IDs in ggetrs info

Issue - State: open - Opened by noamteyssier about 2 years ago
Labels: reimplementation

#168 - Hotfix uniprot query url to stdout

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#167 - Update uniprot query url creation

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#166 - Improved errors uniprot query

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#165 - improved errors for uniprot query

Issue - State: open - Opened by noamteyssier about 2 years ago
Labels: enhancement, uniprot

#164 - make ucsc in silico pcr

Issue - State: open - Opened by noamteyssier about 2 years ago
Labels: enhancement, ucsc

#163 - 161 update links in documentation

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#162 - 152 better description for ggetrs search database

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#161 - update links in documentation

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#160 - Validate lists in python apis

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#159 - Help menu typos

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#158 - updated manifest with required fields for cargo

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#157 - 149 update docs to show python api

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#156 - bug in ggetrs python ensembl reference

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, python-api

#155 - fix help menu in ggetrs ucsc blat

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, documentation

#154 - Fix help menu in ggetrs info

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, documentation

#153 - bug in ggetrs search python module

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, python-api

#152 - better description for ggetrs search database

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation, enhancement

#151 - fix typo in ggetrs archs4 tissue help menu

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, documentation

#150 - update manifest for cargo publication

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: development

#149 - update docs to show python API

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation, python-api

#148 - 146 finish remaining python api

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#147 - Bug with parsing Hits from Megablast BLAST

Issue - State: open - Opened by noamteyssier about 2 years ago
Labels: bug, ncbi

#146 - Finish remaining python API

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: reimplementation, python-api

#145 - 144 list all available libraries in enrichr

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#144 - list all available libraries in enrichr

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: enhancement, enrichr

#143 - 142 move documentation to standalone website

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#142 - move documentation to standalone website

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation, enhancement, development

#141 - 134 multiple hsp fields with blast

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#140 - 139 lookup symbol quick

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#139 - lookup symbol quick id

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: enhancement, ensembl, CLI

#138 - 135 add help description for seq module transcribe

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 2 comments

#137 - 127 update and populate readme

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#136 - ggetrs ucsc blat multiple responses

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, tech-debt, ucsc

#135 - add help description for seq module transcribe

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#134 - Multiple Hsp fields with blast

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: bug, ncbi

#133 - Add some shorthands for enrichr libraries

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: enhancement, enrichr

#132 - 131 setup autocompletions with clap complete

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#131 - setup autocompletions with clap_complete

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: enhancement

#130 - 8 blast rust request

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#129 - 128 update ensembl release

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#128 - update ensembl release

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: ensembl

#127 - update and populate readme

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: documentation

#126 - 125 ci and testing on macos

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#125 - CI and testing on MacOS

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: development

#124 - 6 seq rust request

Pull Request - State: closed - Opened by pgrosjean about 2 years ago - 1 comment

#123 - modify CI for relevant code coverage

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#122 - Only perform code coverage on relevant code blocks

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: development

#121 - 99 testing for enrichr

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#120 - Added cargo config file for M1 compatability

Pull Request - State: closed - Opened by pgrosjean about 2 years ago

#119 - Fixing M1 macOS pyo3 compile error

Issue - State: closed - Opened by pgrosjean about 2 years ago

#118 - 117 allow timeouts for ensembl ftp

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#117 - Allow timeouts for ensembl ftp

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: ensembl

#116 - 100 testing for archs4

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#115 - 102 testing for chembl

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#114 - 103 testing for search

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#113 - 104 testing for info

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#112 - 105 testing for uniprot

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#111 - 106 testing for ncbi

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#110 - 107 testing for pdb

Pull Request - State: closed - Opened by noamteyssier about 2 years ago - 1 comment

#109 - 108 testing for ucsc

Pull Request - State: closed - Opened by noamteyssier about 2 years ago

#108 - testing for ucsc

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: development, tech-debt, ucsc

#107 - testing for pdb

Issue - State: closed - Opened by noamteyssier about 2 years ago
Labels: development, tech-debt, rcsb

GitHub / noamteyssier/ggetrs issues and pull requests