Ecosyste.ms: Issues

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GitHub / noamteyssier/fxtools issues and pull requests

#80 - chore(deps): update hashbrown requirement from 0.14.5 to 0.15.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#79 - chore(deps): bump the ndarray-packages group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#78 - chore(deps): update ndarray requirement from 0.15.6 to 0.16.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies

#77 - chore(deps): update ndarray-stats requirement from 0.5.1 to 0.6.0

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies

#76 - 75 setup dependabot

Pull Request - State: closed - Opened by noamteyssier 2 months ago

#75 - setup dependabot

Issue - State: closed - Opened by noamteyssier 2 months ago

#74 - 73 add a feature for converting csv to fasta

Pull Request - State: closed - Opened by noamteyssier 4 months ago

#73 - add a feature for converting CSV to fasta

Issue - State: closed - Opened by noamteyssier 4 months ago
Labels: enhancement

#72 - 71 include disambiseq as a method

Pull Request - State: closed - Opened by noamteyssier 4 months ago

#71 - include disambiseq as a method

Issue - State: closed - Opened by noamteyssier 4 months ago

#70 - 69 update dependencies and fix lints

Pull Request - State: closed - Opened by noamteyssier 7 months ago

#69 - update dependencies and fix lints

Issue - State: closed - Opened by noamteyssier 7 months ago
Labels: enhancement

#67 - Include an option on sgrna-table to split transcription start sites

Issue - State: closed - Opened by noamteyssier 7 months ago
Labels: enhancement

#66 - Swap parser backend to needletail

Issue - State: open - Opened by noamteyssier 9 months ago
Labels: enhancement

#65 - add docs for multiplex

Issue - State: open - Opened by noamteyssier about 1 year ago
Labels: documentation

#64 - 63 add a multiplex option

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#63 - add a multiplex option

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#62 - 61 add sequence print to cat

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#61 - add sequence print to cat

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#60 - 59 add a clip function to select internal regions within sequences

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#59 - Add a clip function to select internal regions within sequences

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#58 - 56 build up a cat command

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#57 - 55 build up a take command

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#56 - Build up a cat command

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#55 - Build up a take command

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#54 - 52 incorporate a sampling feature

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#53 - 51 incorporate a count feature

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#52 - incorporate a sampling feature

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#51 - Incorporate a count feature

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#50 - add filter to docs page by adding it to summary

Issue - State: closed - Opened by noamteyssier about 1 year ago - 1 comment
Labels: bug, documentation

#49 - 48 set up num threads and compression level as global arguments

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#48 - Set up num_threads and compression level as global arguments

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#47 - 46 add a filter command

Pull Request - State: closed - Opened by noamteyssier about 1 year ago

#46 - Add a filter command

Issue - State: closed - Opened by noamteyssier about 1 year ago
Labels: enhancement

#45 - 44 write up installation instructions

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#44 - write up installation instructions

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: documentation

#43 - 42 add in t2g command

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#42 - add in t2g command

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#41 - 15 make pipeable

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#40 - 39 update to newer version of fxread

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#39 - update to newer version of fxread

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#38 - 37 update fxread version and implement a fix feature

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#37 - update fxread version and implement a fix feature

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#36 - 35 add flag on unique to allow invalid nucleotides

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#35 - add flag on unique to allow invalid nucleotides

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#34 - 26 fix cmake dependency bug

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#33 - 25 write up an mdbook

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#32 - 31 add gzip compression flag

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#31 - add gzip compression flag

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#30 - 29 fix qual bug in sort

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#29 - fix qual bug in sort

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: bug

#28 - 27 include a sort function

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#27 - include a sort function

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#26 - fix cmake dependency bug

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: bug

#25 - write up an mdbook

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: documentation, enhancement

#24 - 23 allow for gzip writer output

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#23 - Allow for gzip writer output

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#22 - 21 allow for left aligned offsets in extract variable

Pull Request - State: closed - Opened by noamteyssier over 1 year ago - 1 comment

#21 - allow for left-aligned offsets in extract variable

Issue - State: closed - Opened by noamteyssier over 1 year ago

#20 - 19 add in dynamic trimming

Pull Request - State: closed - Opened by noamteyssier over 1 year ago

#19 - add in dynamic trimming

Issue - State: closed - Opened by noamteyssier over 1 year ago
Labels: enhancement

#17 - Bug in extract variable where sequences are printed empty on no contiguity

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: bug

#16 - Linting

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#15 - Make Pipeable

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#12 - 11 move from spinners to spinoff

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#11 - move from spinners to spinoff

Issue - State: closed - Opened by noamteyssier over 2 years ago

#10 - 9 extract variable region

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#9 - extract variable region

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#8 - 7 update internals to use fxread=02

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#7 - update internals to use fxread=0.2

Issue - State: closed - Opened by noamteyssier over 2 years ago

#6 - 5 add reverse complement functionality

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#5 - add reverse complement functionality

Issue - State: closed - Opened by noamteyssier over 2 years ago
Labels: enhancement

#4 - 3 lower to upper

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#3 - Lower to Upper

Issue - State: closed - Opened by noamteyssier over 2 years ago

#2 - 1 add in sgrna gene name parser

Pull Request - State: closed - Opened by noamteyssier over 2 years ago

#1 - add in sgRNA -> gene name parser

Issue - State: closed - Opened by noamteyssier over 2 years ago