Ecosyste.ms: Issues
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GitHub / noaa-fims/fims issues and pull requests
#241 - [Refactor]: refactor the add_to_fims_TMB method
Issue -
State: closed - Opened by ChristineStawitz-NOAA almost 2 years ago
- 5 comments
Labels: status: wishlist, kind: refactor, P1
#241 - [Refactor]: refactor the add_to_fims_TMB method
Issue -
State: closed - Opened by ChristineStawitz-NOAA almost 2 years ago
- 5 comments
Labels: status: wishlist, kind: refactor, P1
#241 - [Refactor]: refactor the add_to_fims_TMB method
Issue -
State: closed - Opened by ChristineStawitz-NOAA almost 2 years ago
- 5 comments
Labels: status: wishlist, kind: refactor, P1
#235 - [Feature]: Link FIMS.cpp to model.hpp to test MakeADFun
Issue -
State: closed - Opened by Andrea-Havron-NOAA about 2 years ago
- 2 comments
Labels: status: help wanted
#235 - [Feature]: Link FIMS.cpp to model.hpp to test MakeADFun
Issue -
State: closed - Opened by Andrea-Havron-NOAA about 2 years ago
- 2 comments
Labels: status: help wanted
#235 - [Feature]: Link FIMS.cpp to model.hpp to test MakeADFun
Issue -
State: closed - Opened by Andrea-Havron-NOAA about 2 years ago
- 2 comments
Labels: status: help wanted
#232 - [Feature]: Update selectivity and recruitment interfaces
Issue -
State: closed - Opened by Bai-Li-NOAA about 2 years ago
- 2 comments
Labels: kind: feature, status: help wanted
#232 - [Feature]: Update selectivity and recruitment interfaces
Issue -
State: closed - Opened by Bai-Li-NOAA about 2 years ago
- 2 comments
Labels: kind: feature, status: help wanted
#232 - [Feature]: Update selectivity and recruitment interfaces
Issue -
State: closed - Opened by Bai-Li-NOAA about 2 years ago
- 2 comments
Labels: kind: feature, status: help wanted
#220 - [Question/help] Why do we parameterize fishing mortality and recruitment using mean and deviations?
Issue -
State: open - Opened by JaneSullivan-NOAA about 2 years ago
- 17 comments
Labels: kind: question, status: needs discussion, P2, theme: NLL refactor
#220 - [Question/help] Why do we parameterize fishing mortality and recruitment using mean and deviations?
Issue -
State: open - Opened by JaneSullivan-NOAA about 2 years ago
- 17 comments
Labels: kind: question, status: needs discussion, P2, theme: NLL refactor
#210 - [Refactor]: when should FIMS switch to TMBad?
Issue -
State: open - Opened by Andrea-Havron about 2 years ago
- 9 comments
Labels: status: wishlist, kind: refactor, P3, theme: code cleanup
#210 - [Refactor]: when should FIMS switch to TMBad?
Issue -
State: open - Opened by Andrea-Havron about 2 years ago
- 4 comments
Labels: kind: feature, status: wishlist, attribute: needs discussion, P3, theme: NLL refactor
#203 - [INPUT NEEDED] A first pilot stock in your region that could use FIMS
Issue -
State: closed - Opened by ChristineStawitz-NOAA about 2 years ago
- 15 comments
Labels: status: help wanted, kind: question, status: wishlist, theme: pilot studies
#203 - [INPUT NEEDED] A first pilot stock in your region that could use FIMS
Issue -
State: open - Opened by ChristineStawitz-NOAA about 2 years ago
- 15 comments
Labels: status: help wanted, kind: question, status: wishlist, theme: pilot studies
#193 - [Feature]: Rcpp interface to call module, likelihoods
Issue -
State: closed - Opened by ChristineStawitz-NOAA about 2 years ago
- 6 comments
#193 - [Feature]: Rcpp interface to call module, likelihoods
Issue -
State: closed - Opened by ChristineStawitz-NOAA about 2 years ago
- 6 comments
#193 - [Feature]: Rcpp interface to call module, likelihoods
Issue -
State: closed - Opened by ChristineStawitz-NOAA about 2 years ago
- 6 comments
#192 - Vectorize distributions
Issue -
State: open - Opened by Andrea-Havron-NOAA about 2 years ago
- 4 comments
Labels: status: wishlist, kind: refactor, theme: NLL refactor
#192 - Vectorize distributions
Issue -
State: open - Opened by Andrea-Havron-NOAA about 2 years ago
- 2 comments
Labels: status: wishlist, kind: refactor, theme: NLL refactor
#190 - [Bug]: call doc and style r GHA is failing and R styler returns an error
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
Labels: kind: bug
#190 - [Bug]: call doc and style r GHA is failing and R styler returns an error
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
Labels: kind: bug
#190 - [Bug]: call doc and style r GHA is failing and R styler returns an error
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
Labels: kind: bug
#187 - Separate the "recruitment" of the population being tied to an SRR
Issue -
State: open - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: status: wishlist, theme: NLL refactor
#187 - Separate the "recruitment" of the population being tied to an SRR
Issue -
State: open - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: status: wishlist, theme: NLL refactor
#187 - Separate the "recruitment" of the population being tied to an SRR
Issue -
State: open - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: status: wishlist, theme: NLL refactor
#186 - [Feature]: recruitment deviations vector options
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: kind: feature, status: wishlist, theme: NLL refactor
#186 - [Feature]: recruitment deviations vector options
Issue -
State: open - Opened by Bai-Li-NOAA over 2 years ago
- 1 comment
Labels: kind: feature, status: wishlist, attribute: needs discussion, theme: NLL refactor
#186 - [Feature]: recruitment deviations vector options
Issue -
State: open - Opened by Bai-Li-NOAA over 2 years ago
- 1 comment
Labels: kind: feature, status: wishlist, attribute: needs discussion, theme: NLL refactor
#185 - [Feature]: Do we need to put bias adjustment fraction within the likelihood?
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 37 comments
Labels: kind: question, P1
#183 - [Bug]: Error in Google test GHA when CXX compiler is GNU 11.2.0
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 5 comments
Labels: kind: bug, P2
#183 - [Bug]: Error in Google test GHA when CXX compiler is GNU 11.2.0
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 5 comments
Labels: kind: bug, P2
#183 - [Bug]: Error in Google test GHA when CXX compiler is GNU 11.2.0
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 5 comments
Labels: kind: bug, P2
#180 - [Feature]: Develop population loop module
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 5 comments
Labels: kind: feature
#180 - [Feature]: Develop population loop module
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 5 comments
Labels: kind: feature
#179 - [Feature]: Develop fleet module
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 7 comments
Labels: kind: feature
#179 - [Feature]: Develop fleet module
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 7 comments
Labels: kind: feature
#179 - [Feature]: Develop fleet module
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 7 comments
Labels: kind: feature
#177 - [FEATURE] Create formula interface (w/ notes from data group)
Issue -
State: open - Opened by kellijohnson-NOAA over 2 years ago
Labels: kind: feature, attribute: needs discussion, theme: r interface
#174 - [Feature]: plot(FIMSFrame(data_mile1))
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 6 comments
Labels: kind: question, status: triage_needed
#174 - [Feature]: plot(FIMSFrame(data_mile1))
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 6 comments
Labels: kind: question, status: triage_needed
#174 - [Feature]: plot(FIMSFrame(data_mile1))
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 6 comments
Labels: kind: question, status: triage_needed
#173 - [Feature]: add ability to toggle between ADMB-style sum to zero constraint and k-1 style
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: status: wishlist, status: needs discussion, theme: NLL refactor
#170 - [Refactor]: Distributions base to share more parameters
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: status: wishlist, attribute: needs discussion, theme: NLL refactor
#170 - [Refactor]: Distributions base to share more parameters
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 9 comments
Labels: status: wishlist, status: needs discussion, theme: NLL refactor
#170 - [Refactor]: Distributions base to share more parameters
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: status: wishlist, attribute: needs discussion, theme: NLL refactor
#169 - check validity of data object using the weight-at-age module
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 2 comments
Labels: kind: feature
#169 - check validity of data object using the weight-at-age module
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 2 comments
Labels: kind: feature
#169 - check validity of data object using the weight-at-age module
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 2 comments
Labels: kind: feature
#167 - [Feature]: Easy functionality to plot input data object
Issue -
State: open - Opened by Cole-Monnahan-NOAA over 2 years ago
Labels: kind: feature, status: wishlist, theme: r interface
#167 - [Feature]: Easy functionality to plot input data object
Issue -
State: open - Opened by Cole-Monnahan-NOAA over 2 years ago
Labels: kind: feature, status: wishlist, theme: r interface
#167 - [Feature]: Easy functionality to plot input data object
Issue -
State: open - Opened by Cole-Monnahan-NOAA over 2 years ago
Labels: kind: feature, status: wishlist, theme: r interface
#160 - [Bug]: testthat test-use-module.R does not work on GHA
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: kind: bug
#160 - [Bug]: testthat test-use-module.R does not work on GHA
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: kind: bug
#160 - [Bug]: testthat test-use-module.R does not work on GHA
Issue -
State: closed - Opened by Bai-Li-NOAA over 2 years ago
- 2 comments
Labels: kind: bug
#155 - [Bug]: create_Rcpp_object R file has a script that now runs when the package loads
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
Labels: kind: bug
#155 - [Bug]: create_Rcpp_object R file has a script that now runs when the package loads
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
Labels: kind: bug
#155 - [Bug]: create_Rcpp_object R file has a script that now runs when the package loads
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
Labels: kind: bug
#148 - [Feature]: an R function to create the Rcpp interface for new modules from a template file
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 9 comments
Labels: kind: feature, theme: r interface
#148 - [Feature]: an R function to create the Rcpp interface for new modules from a template file
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 9 comments
Labels: kind: feature, status: wishlist, theme: r interface
#147 - Empirical maturity at age[Feature]:
Issue -
State: open - Opened by JonBrodziak over 2 years ago
Labels: kind: feature, status: wishlist, theme: more features
#147 - Empirical maturity at age[Feature]:
Issue -
State: open - Opened by JonBrodziak over 2 years ago
Labels: kind: feature, status: wishlist, theme: more features
#147 - Empirical maturity at age[Feature]:
Issue -
State: open - Opened by JonBrodziak over 2 years ago
Labels: kind: feature, status: wishlist, theme: more features
#144 - Update documentation in selectivity_base.hpp and selectivity/functor/logistic.hpp
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 1 comment
#144 - Update documentation in selectivity_base.hpp and selectivity/functor/logistic.hpp
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 1 comment
#144 - Update documentation in selectivity_base.hpp and selectivity/functor/logistic.hpp
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 1 comment
#141 - [Feature]: should input R data ages always start at zero?
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 6 comments
Labels: kind: question, status: needs discussion, theme: r interface
#139 - [FEATURE] logistic maturity ogive
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 1 comment
Labels: kind: feature
#139 - [FEATURE] logistic maturity ogive
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 1 comment
Labels: kind: feature
#139 - [FEATURE] logistic maturity ogive
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 1 comment
Labels: kind: feature
#137 - [BUG] repeats of fims::exp() and fims::log()
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 1 comment
Labels: kind: bug
#137 - [BUG] repeats of fims::exp() and fims::log()
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 1 comment
Labels: kind: bug
#137 - [BUG] repeats of fims::exp() and fims::log()
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 1 comment
Labels: kind: bug
#136 - What type of uncertainty should be used for each data type?
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 8 comments
Labels: kind: question, theme: r interface
#136 - What type of uncertainty should be used for each data type?
Issue -
State: open - Opened by kellijohnson-NOAA over 2 years ago
- 8 comments
Labels: kind: question, attribute: needs discussion, theme: more features
#134 - [FEATURE] implement differentiable max function to scale selectivity functions
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 16 comments
Labels: kind: feature, status: help wanted
#134 - [FEATURE] implement differentiable max function to scale selectivity functions
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 16 comments
Labels: kind: feature, status: help wanted
#134 - [FEATURE] implement differentiable max function to scale selectivity functions
Issue -
State: closed - Opened by JaneSullivan-NOAA over 2 years ago
- 16 comments
Labels: kind: feature, status: help wanted
#131 - Questions for @bai-li-noaa regarding model comparison project specifications
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 4 comments
#131 - Questions for @bai-li-noaa regarding model comparison project specifications
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 4 comments
#131 - Questions for @bai-li-noaa regarding model comparison project specifications
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 4 comments
#126 - [FEATURE]: Use issue forms instead of issue templates for issue submission
Issue -
State: closed - Opened by k-doering-NOAA over 2 years ago
- 2 comments
Labels: kind: feature, status: help wanted
#126 - [FEATURE]: Use issue forms instead of issue templates for issue submission
Issue -
State: closed - Opened by k-doering-NOAA over 2 years ago
- 2 comments
Labels: kind: feature, status: help wanted
#126 - [FEATURE]: Use issue forms instead of issue templates for issue submission
Issue -
State: closed - Opened by k-doering-NOAA over 2 years ago
- 2 comments
Labels: kind: feature, status: help wanted
#123 - [FEATURE] update doxygen github action to push to FIMS-docs
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 4 comments
Labels: kind: feature
#123 - [FEATURE] update doxygen github action to push to FIMS-docs
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 4 comments
Labels: kind: feature
#123 - [FEATURE] update doxygen github action to push to FIMS-docs
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 4 comments
Labels: kind: feature
#120 - column names and/or order of the input data frame
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 21 comments
Labels: status: help wanted, kind: question
#120 - column names and/or order of the input data frame
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 21 comments
Labels: status: help wanted, kind: question
#120 - column names and/or order of the input data frame
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 21 comments
Labels: status: help wanted, kind: question
#112 - [FEATURE] Dirichlet-multinomial likelihood for composition data
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature, status: wishlist, theme: more features
#112 - [FEATURE] Dirichlet-multinomial likelihood for composition data
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature, status: wishlist, theme: more features
#112 - [FEATURE] Dirichlet-multinomial likelihood for composition data
Issue -
State: open - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature, status: wishlist, theme: more features
#111 - [FEATURE] Non standard evaluation of function in input data frame
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 7 comments
Labels: kind: question
#111 - [FEATURE] Non standard evaluation of function in input data frame
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 7 comments
Labels: kind: question
#111 - [FEATURE] Non standard evaluation of function in input data frame
Issue -
State: closed - Opened by kellijohnson-NOAA over 2 years ago
- 7 comments
Labels: kind: question
#108 - [FEATURE] Pull TMB R-style distributions into FIMS objective function
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature
#108 - [FEATURE] Pull TMB R-style distributions into FIMS objective function
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature
#108 - [FEATURE] Pull TMB R-style distributions into FIMS objective function
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature
#107 - [FEATURE] Implement empirical weight-at-age module for FIMS
Issue -
State: closed - Opened by ChristineStawitz-NOAA over 2 years ago
- 3 comments
Labels: kind: feature