Ecosyste.ms: Issues

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GitHub / noaa-fims/fims issues and pull requests

#596 - [Developer Issue]: fims::Vector operators

Issue - State: open - Opened by msupernaw 5 months ago
Labels: attribute: needs more info, attribute: needs discussion

#596 - [Developer Issue]: fims::Vector operators

Issue - State: closed - Opened by msupernaw 5 months ago
Labels: attribute: needs more info, attribute: needs discussion

#594 - M2 r cleanup

Pull Request - State: closed - Opened by kellijohnson-NOAA 5 months ago - 5 comments
Labels: kind: documentation, kind: refactor, theme: code cleanup

#593 - M2 r cleanup fimsframe

Pull Request - State: closed - Opened by MOshima-PIFSC 5 months ago - 2 comments

#592 - M2 r cleanup remove

Pull Request - State: closed - Opened by kellijohnson-NOAA 5 months ago - 1 comment

#592 - M2 r cleanup remove

Pull Request - State: closed - Opened by kellijohnson-NOAA 5 months ago - 1 comment

#591 - Document units in FIMS

Pull Request - State: open - Opened by Bai-Li-NOAA 5 months ago - 1 comment

#591 - Document units in FIMS

Pull Request - State: closed - Opened by Bai-Li-NOAA 5 months ago - 11 comments

#590 - [Refactor]: Remove FIMSFrameAge

Issue - State: closed - Opened by kellijohnson-NOAA 5 months ago
Labels: kind: refactor, P3, theme: r interface, theme: code cleanup

#589 - M2 r cleanup format

Pull Request - State: closed - Opened by kellijohnson-NOAA 5 months ago - 3 comments

#588 - [Developer Issue]: are use_module() and create_rcpp_interface_object() being used?

Issue - State: closed - Opened by kellijohnson-NOAA 5 months ago - 8 comments
Labels: kind: refactor, low hanging 🍎, theme: code cleanup

#587 - removing mkObj from codebase

Pull Request - State: closed - Opened by MOshima-PIFSC 5 months ago - 3 comments

#586 - [Refactor]: Edit connections between fleet.hpp and distributions

Issue - State: closed - Opened by Andrea-Havron-NOAA 5 months ago - 1 comment
Labels: kind: refactor, theme: NLL refactor, sprint 1

#585 - [Refactor]: Add MultinomialLPMF child class

Issue - State: closed - Opened by Andrea-Havron-NOAA 5 months ago - 1 comment
Labels: kind: refactor, theme: NLL refactor, sprint 1

#584 - [Refactor]: fims vector defaults to size 1

Issue - State: open - Opened by Andrea-Havron-NOAA 5 months ago - 2 comments
Labels: kind: refactor, low hanging 🍎, theme: NLL refactor, sprint 1

#584 - [Refactor]: fims vector defaults to size 1

Issue - State: open - Opened by Andrea-Havron-NOAA 5 months ago
Labels: kind: refactor, low hanging 🍎, theme: NLL refactor, sprint 1

#583 - [Developer Issue]: Create MultivariateDistributionBase class

Issue - State: closed - Opened by Andrea-Havron-NOAA 5 months ago - 1 comment
Labels: kind: feature, theme: NLL refactor, sprint 1

#583 - [Developer Issue]: Create MultivariateDistributionBase class

Issue - State: open - Opened by Andrea-Havron-NOAA 5 months ago
Labels: kind: feature, theme: NLL refactor, sprint 1

#582 - [Developer Issue]: Develop the FIMS distribution module

Issue - State: open - Opened by Andrea-Havron-NOAA 5 months ago - 1 comment
Labels: kind: feature, theme: NLL refactor

#581 - [Refactor]: Add LognormalLPDF child class

Issue - State: closed - Opened by Andrea-Havron-NOAA 5 months ago - 3 comments
Labels: kind: refactor, theme: NLL refactor, sprint 1

#580 - M2 r output issue 558 (partial, add skeleton output object/constructor)

Pull Request - State: open - Opened by k-doering-NOAA 5 months ago - 1 comment

#580 - M2 r output issue 558 (partial, add skeleton output object/constructor)

Pull Request - State: closed - Opened by k-doering-NOAA 5 months ago - 3 comments

#580 - M2 r output issue 558 (partial, add skeleton output object/constructor)

Pull Request - State: open - Opened by k-doering-NOAA 5 months ago - 2 comments

#579 - [Feature]: incorporating discard fraction and discard compositions in FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: attribute: case study features, theme: more features

#579 - [Feature]: incorporating discard fraction and discard compositions in FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: status: triage_needed, theme: pilot studies, theme: more features

#579 - [Feature]: incorporating discard fraction and discard compositions in FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: status: triage_needed, theme: pilot studies, theme: more features

#578 - [Feature]: length-based selectivity functions

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: attribute: case study features, theme: more features

#578 - [Feature]: length-based selectivity functions

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: status: triage_needed, theme: pilot studies

#578 - [Feature]: length-based selectivity functions

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: status: triage_needed, theme: pilot studies, theme: more features

#577 - [Feature]: support to include length composition data

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: status: triage_needed, theme: pilot studies, theme: more features

#577 - [Feature]: support to include length composition data

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: status: triage_needed, theme: pilot studies

#577 - [Feature]: support to include length composition data

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: kind: feature, attribute: case study features, theme: more features

#576 - [Feature]: ability to zero out specific ages from selectivity curve

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 6 comments
Labels: attribute: good first issue, status: triage_needed, attribute: needs discussion, case study features, theme: more features

#576 - [Feature]: ability to zero out specific ages from selectivity curve

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 6 comments
Labels: status: needs discussion, attribute: case study features, theme: more features

#576 - [Feature]: ability to zero out specific ages from selectivity curve

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 6 comments
Labels: attribute: good first issue, status: triage_needed, attribute: needs discussion, case study features, theme: more features

#575 - [Feature]: separate NLL components by fleet

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 4 comments
Labels: kind: feature, theme: NLL refactor, attribute: case study features

#575 - [Feature]: separate NLL components by fleet

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 1 comment
Labels: status: triage_needed, theme: NLL refactor, theme: pilot studies

#574 - [Feature]: SPR-based reference points for FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: kind: feature, status: needs discussion, attribute: case study features, theme: more features

#574 - [Feature]: SPR-based reference points for FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 3 comments
Labels: kind: feature, status: needs discussion, attribute: case study features, theme: more features

#574 - [Feature]: SPR-based reference points for FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago
Labels: attribute: needs discussion, case study features

#573 - [Refactor]: Add NormalLPDF child class

Issue - State: closed - Opened by Andrea-Havron-NOAA 5 months ago - 2 comments
Labels: kind: refactor, theme: NLL refactor, sprint 1

#572 - [Feature]: timing support in FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 5 months ago - 12 comments
Labels: status: needs discussion, attribute: case study features, theme: more features

#571 - Rename testthat files

Pull Request - State: open - Opened by k-doering-NOAA 5 months ago - 1 comment

#571 - Rename testthat files

Pull Request - State: closed - Opened by k-doering-NOAA 5 months ago - 3 comments

#570 - [Developer Issue]: Need broader translation software and cheatsheets for a range of current software platforms

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago - 1 comment
Labels: kind: feature, status: help wanted

#570 - [Developer Issue]: Need broader translation software and cheatsheets for a range of current software platforms

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago - 1 comment
Labels: kind: feature, status: help wanted

#569 - Focus on accessibility of the tool on multiple levels for different types of users

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago - 1 comment
Labels: kind: documentation, theme: documentation

#569 - Focus on accessibility of the tool on multiple levels for different types of users

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago
Labels: status: triage_needed

#568 - [Developer Issue]: Archive documentation for older versions of FIMS

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago - 3 comments
Labels: kind: documentation, theme: documentation

#568 - [Developer Issue]: Archive documentation for older versions of FIMS

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago - 3 comments
Labels: kind: documentation, theme: documentation

#568 - [Developer Issue]: Archive documentation for older versions of FIMS

Issue - State: open - Opened by Bai-Li-NOAA 5 months ago - 3 comments
Labels: kind: documentation, theme: documentation

#567 - [Refactor]: R code does not adhere to style guide

Issue - State: closed - Opened by kellijohnson-NOAA 5 months ago - 3 comments
Labels: kind: refactor

#565 - [Developer Issue]: `mkObj()` does not appear to be used in the code base

Issue - State: closed - Opened by kellijohnson-NOAA 5 months ago - 8 comments
Labels: kind: refactor, low hanging 🍎, theme: code cleanup

#564 - [Refactor]: Remove the magrittr pipe and use native pipe instead

Issue - State: closed - Opened by kellijohnson-NOAA 5 months ago
Labels: kind: refactor

#563 - fix Codespace fails to build, add rstudio option

Pull Request - State: closed - Opened by k-doering-NOAA 5 months ago - 4 comments

#562 - [Feature]: Make units explicit and convert between units

Issue - State: closed - Opened by ChristineStawitz-NOAA 5 months ago - 3 comments
Labels: kind: documentation, kind: feature, status: wishlist, theme: R interface

#561 - [Developer Issue]: need to document what units are input and output in FIMS

Issue - State: closed - Opened by ChristineStawitz-NOAA 5 months ago - 3 comments
Labels: kind: refactor, P2, theme: r interface

#560 - rm assignee from issue templates

Pull Request - State: closed - Opened by k-doering-NOAA 5 months ago - 1 comment

#559 - [Bug]: Codespace fails to build

Issue - State: closed - Opened by k-doering-NOAA 6 months ago - 1 comment
Labels: kind: bug

#558 - [Developer Issue]: First version of R output object

Issue - State: open - Opened by k-doering-NOAA 6 months ago - 6 comments
Labels: theme: R interface

#557 - [Refactor]: Use a different system besides S4 for R code?

Issue - State: closed - Opened by k-doering-NOAA 6 months ago - 8 comments
Labels: kind: refactor, theme: r interface

#557 - [Refactor]: Use a different system besides S4?

Issue - State: open - Opened by k-doering-NOAA 6 months ago
Labels: status: triage_needed, kind: refactor, theme: r interface

#556 - [Feature]: Design names for output labels

Issue - State: open - Opened by k-doering-NOAA 6 months ago - 1 comment
Labels: theme: r interface

#555 - [Feature]: Make output$obj portable

Issue - State: open - Opened by ChristineStawitz-NOAA 6 months ago
Labels: kind: refactor, status: needs discussion, theme: r interface

#554 - [Developer Issue]: Why not RTMB?

Issue - State: open - Opened by Andrea-Havron-NOAA 7 months ago - 20 comments
Labels: kind: feature, kind: question, status: needs more info, kind: refactor, P2, theme: more features

#553 - [Developer Issue]: FAQ for transitions to FIMS

Issue - State: open - Opened by ChristineStawitz-NOAA 7 months ago - 3 comments
Labels: theme: documentation

#552 - [Feature]: R crashes rather than giving error when there are no estimated parameters

Issue - State: open - Opened by iantaylor-NOAA 7 months ago - 7 comments
Labels: kind: bug, P3, attribute: low hanging 🍎, theme: r interface

#551 - [Developer Issue]: add gdb and TMBhelper to FIMS codespace JSON

Issue - State: closed - Opened by ChristineStawitz-NOAA 7 months ago - 8 comments
Labels: kind: feature, P3, attribute: low hanging 🍎, theme: code cleanup

#550 - [Refactor]: Remove exit(1) from Information::CreateModel

Issue - State: open - Opened by msupernaw 7 months ago - 4 comments
Labels: kind: refactor

#549 - [Documentation]: vignette organization on FIMS pkgdown website?

Issue - State: closed - Opened by k-doering-NOAA 8 months ago
Labels: kind: documentation, attribute: good first issue, P2, theme: documentation

#548 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 8 months ago - 2 comments

#547 - format C++ code with clang format

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 8 months ago - 2 comments

#546 - [Feature]: Add one-step-ahead (OSA) residuals

Issue - State: open - Opened by Cole-Monnahan-NOAA 8 months ago - 1 comment
Labels: kind: feature, status: needs discussion, P2, theme: R interface

#545 - [Feature]: Create generic infrastructure for priors and random effects

Issue - State: open - Opened by Andrea-Havron-NOAA 8 months ago - 2 comments
Labels: theme: NLL refactor

#545 - [Feature]: Create generic infrastructure for priors and random effects

Issue - State: open - Opened by Andrea-Havron-NOAA 8 months ago - 1 comment
Labels: theme: NLL refactor

#544 - [Feature]: add simulate functionality

Issue - State: open - Opened by cmlegault 8 months ago
Labels: kind: feature, theme: NLL refactor

#544 - [Feature]: add simulate functionality

Issue - State: open - Opened by cmlegault 8 months ago - 1 comment
Labels: kind: feature, P2, theme: NLL refactor

#543 - Allow ability for proportion female to vary by age

Pull Request - State: open - Opened by ChristineStawitz-NOAA 8 months ago - 3 comments

#543 - Allow ability for proportion female to vary by age

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 8 months ago - 3 comments

#542 - [Developer Issue]: investigate pre-commit hooks that might be useful

Issue - State: closed - Opened by ChristineStawitz-NOAA 8 months ago
Labels: status: triage_needed

#541 - [Developer Issue]: investigate setting up codespaces that use RStudio IDE

Issue - State: open - Opened by ChristineStawitz-NOAA 8 months ago - 3 comments
Labels: status: needs discussion

#540 - make missing data work with -999

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 9 months ago - 8 comments

#539 - Document FIMS history

Issue - State: open - Opened by Bai-Li-NOAA 9 months ago
Labels: kind: documentation, P3, theme: documentation

#539 - Document FIMS history

Issue - State: open - Opened by Bai-Li-NOAA 9 months ago
Labels: theme: documentation

#539 - Document FIMS history

Issue - State: open - Opened by Bai-Li-NOAA 9 months ago
Labels: theme: documentation

#538 - Add documentation describing need to create logs/ folder and use library to get logs

Issue - State: open - Opened by nathanvaughan-NOAA 9 months ago - 13 comments
Labels: kind: bug, kind: documentation, theme: documentation

#538 - Add documentation describing need to create logs/ folder and use library to get logs

Issue - State: open - Opened by nathanvaughan-NOAA 9 months ago - 13 comments
Labels: kind: bug, kind: documentation, theme: documentation

#537 - [Feature]: Add r-universe badge and install instructions to readme

Issue - State: closed - Opened by ChristineStawitz-NOAA 9 months ago - 1 comment
Labels: low hanging 🍎, theme: documentation

#536 - [Developer Issue]: changes to Matrix ABI could cause incompatibility with TMB version

Issue - State: open - Opened by ChristineStawitz-NOAA 9 months ago - 1 comment
Labels: attribute: needs more info

#535 - [Refactor]: FIMSFrame fleet identification overly strict

Issue - State: open - Opened by Ovec8hkin 10 months ago - 6 comments
Labels: status: wishlist, kind: refactor, theme: r interface

#535 - [Refactor]: FIMSFrame fleet identification overly strict

Issue - State: open - Opened by Ovec8hkin 10 months ago - 6 comments
Labels: status: wishlist, kind: refactor, theme: r interface

#533 - Release mq

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 10 months ago - 2 comments

#532 - make log_obs_error a vector

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 10 months ago - 1 comment

#532 - make log_obs_error a vector

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 10 months ago - 1 comment

#531 - [Test]: Write tests for FIMS features not covered in existing tests

Issue - State: open - Opened by ChristineStawitz-NOAA 10 months ago - 8 comments
Labels: theme: code cleanup

#531 - [Test]: Write tests for FIMS features not covered in existing tests

Issue - State: open - Opened by ChristineStawitz-NOAA 10 months ago - 7 comments
Labels: theme: code cleanup

#529 - [Developer Issue]: add release notes with breaking changes through MQ

Issue - State: open - Opened by ChristineStawitz-NOAA 10 months ago
Labels: status: triage_needed, theme: code cleanup