Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / noaa-fims/fims issues and pull requests

#670 - Add fimsfit

Pull Request - State: open - Opened by Bai-Li-NOAA about 22 hours ago - 1 comment

#669 - feat(ParameterVector): Allows for time-varying parameters

Pull Request - State: open - Opened by kellijohnson-NOAA 5 days ago - 4 comments

#668 - Removes log_sigma_recruit from BH interface

Pull Request - State: closed - Opened by kellijohnson-NOAA 14 days ago - 2 comments

#666 - [feature:] do we need a get_parameter_names function?

Issue - State: open - Opened by Andrea-Havron-NOAA about 1 month ago
Labels: kind: feature, status: triage_needed

#665 - 645 add variable map

Pull Request - State: closed - Opened by Andrea-Havron-NOAA about 1 month ago - 5 comments

#664 - [Developer Issue]: convert JSON output to R list following plan in design doc

Issue - State: open - Opened by iantaylor-NOAA about 1 month ago - 2 comments
Labels: status: triage_needed

#663 - Update DESCRIPTION to depend on R 4.1.0

Pull Request - State: open - Opened by iantaylor-NOAA about 1 month ago - 2 comments

#663 - Update DESCRIPTION to depend on R 4.1.0

Pull Request - State: open - Opened by iantaylor-NOAA about 1 month ago - 2 comments

#662 - [Developer Issue]: M2 Quality control task list

Issue - State: open - Opened by kellijohnson-NOAA about 2 months ago - 1 comment
Labels: kind: refactor, P3, theme: code cleanup

#661 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 2 months ago - 2 comments

#660 - [Developer Issue]: Use GHA to create a pull request to modify pull requests

Issue - State: open - Opened by Bai-Li-NOAA 2 months ago - 2 comments
Labels: status: triage_needed

#659 - [Developer Issue]: Add Doxygen formulas for functions in the population module

Issue - State: open - Opened by Bai-Li-NOAA 2 months ago
Labels: status: triage_needed

#659 - [Developer Issue]: Add Doxygen formulas for functions in the population module

Issue - State: open - Opened by Bai-Li-NOAA 2 months ago
Labels: status: triage_needed

#658 - doc: remove notes containing syntax errors

Pull Request - State: closed - Opened by Bai-Li-NOAA 2 months ago - 2 comments

#658 - doc: remove notes containing syntax errors

Pull Request - State: closed - Opened by Bai-Li-NOAA 2 months ago - 2 comments

#657 - refactor nll cleanup

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 2 months ago - 1 comment

#657 - refactor nll cleanup

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 2 months ago - 1 comment

#656 - [Developer Issue]: actions/checkout@v3 uses deprecated Node.js version

Issue - State: open - Opened by kellijohnson-NOAA 2 months ago
Labels: attribute: good first issue, kind: refactor, P3, attribute: low hanging 🍎, theme: code cleanup

#655 - 644 refactor nll cleanup

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 2 months ago - 1 comment

#654 - Fix proportion female

Pull Request - State: closed - Opened by kellijohnson-NOAA 2 months ago - 3 comments

#653 - [Bug:] Inconsistent inputs for evaluate() functions in the recruitment module

Issue - State: open - Opened by Bai-Li-NOAA 2 months ago - 1 comment
Labels: kind: bug, P3, theme: code cleanup

#652 - Add documentation to Rcpp interfaces

Pull Request - State: closed - Opened by Bai-Li-NOAA 2 months ago - 4 comments

#651 - test: modularize R tests with helper functions and fixtures

Pull Request - State: closed - Opened by Bai-Li-NOAA 2 months ago - 2 comments

#650 - [Developer Issue]: Relocate and document FIMS folder descriptions

Issue - State: open - Opened by Bai-Li-NOAA 3 months ago - 2 comments
Labels: status: triage_needed

#650 - [Developer Issue]: Relocate and document FIMS folder descriptions

Issue - State: open - Opened by Bai-Li-NOAA 3 months ago - 1 comment
Labels: status: triage_needed

#649 - [Developer Issue]: Investigate the requirements for FIMS reproducibility

Issue - State: open - Opened by Bai-Li-NOAA 3 months ago - 3 comments
Labels: status: triage_needed

#648 - [Developer Issue]: create a vignette to demonstrate how to run FIMS in parallel

Issue - State: open - Opened by Bai-Li-NOAA 3 months ago
Labels: kind: documentation, P3, theme: R interface, theme: documentation

#647 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 3 months ago - 2 comments

#647 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 3 months ago - 2 comments

#646 - [Developer Issue]: Refactor distribution interface

Issue - State: open - Opened by Andrea-Havron-NOAA 3 months ago
Labels: kind: refactor, theme: NLL refactor, sprint 2

#645 - [Developer Issue]: Add variable_map

Issue - State: open - Opened by Andrea-Havron-NOAA 3 months ago - 5 comments
Labels: kind: feature, theme: NLL refactor, sprint 2

#644 - [Developer Issue]: refactor nll cleanup

Issue - State: open - Opened by Andrea-Havron-NOAA 3 months ago - 2 comments
Labels: status: triage_needed, kind: refactor, theme: NLL refactor, sprint 2

#644 - [Developer Issue]: refactor nll cleanup

Issue - State: open - Opened by Andrea-Havron-NOAA 3 months ago - 5 comments
Labels: status: triage_needed, kind: refactor, theme: NLL refactor, sprint 2

#643 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 3 months ago - 2 comments

#642 - refactor: Deletes issue and PR templates

Pull Request - State: closed - Opened by kellijohnson-NOAA 3 months ago - 3 comments
Labels: kind: documentation, P3, theme: documentation

#641 - Fix FIMSFrame

Pull Request - State: closed - Opened by kellijohnson-NOAA 3 months ago - 3 comments
Labels: kind: bug, kind: refactor, theme: R interface

#640 - Add an R test to run FIMS in parallel using {snowfall}

Pull Request - State: closed - Opened by Bai-Li-NOAA 3 months ago - 2 comments

#639 - [Bug]: `type.convert()` is reformatting date to character without leading zeros in data_mile1

Issue - State: closed - Opened by kellijohnson-NOAA 3 months ago - 2 comments
Labels: kind: bug, status: needs discussion, P1, theme: R interface

#638 - [Bug]: proportion female at age

Issue - State: open - Opened by KyleShertzer-NOAA 3 months ago - 2 comments
Labels: kind: bug, kind: documentation, kind: refactor, P3, theme: R interface, theme: code cleanup

#636 - Edit readme

Pull Request - State: closed - Opened by k-doering-NOAA 3 months ago - 4 comments

#635 - [Developer Issue]: Documenting things using Rcpp or C++

Issue - State: open - Opened by kellijohnson-NOAA 3 months ago
Labels: kind: documentation, kind: question, status: needs discussion, P2, theme: documentation

#634 - [Developer Issue]: FIMS needs an overview document

Issue - State: open - Opened by Bai-Li-NOAA 3 months ago
Labels: kind: documentation, theme: documentation

#633 - fix: Use native pipe instead of %>%

Pull Request - State: closed - Opened by kellijohnson-NOAA 4 months ago - 2 comments

#632 - Style code and document

Pull Request - State: open - Opened by ChristineStawitz-NOAA 4 months ago - 2 comments

#632 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 4 months ago - 2 comments

#631 - Fixes label on bug issue template and adds reprex guidance

Pull Request - State: closed - Opened by kellijohnson-NOAA 4 months ago - 2 comments
Labels: kind: bug, kind: documentation

#630 - document densities from sprint 1 nll refactor

Pull Request - State: open - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment

#630 - document densities from sprint 1 nll refactor

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 2 comments

#629 - [Feature]: Specify input sample size for weight-at-age data

Issue - State: open - Opened by kellijohnson-NOAA 4 months ago - 1 comment
Labels: kind: feature, status: wishlist, status: needs discussion, P3, theme: NLL refactor

#629 - [Feature]: Specify input sample size for weight-at-age data

Issue - State: open - Opened by kellijohnson-NOAA 4 months ago
Labels: kind: feature, status: wishlist, status: needs discussion, P3, theme: NLL refactor

#628 - fix(data_mile1): sd of log(x) instead of CV

Pull Request - State: closed - Opened by kellijohnson-NOAA 4 months ago - 3 comments
Labels: kind: bug, P3, theme: code cleanup

#628 - fix(data_mile1): sd of log(x) instead of CV

Pull Request - State: closed - Opened by kellijohnson-NOAA 4 months ago - 3 comments
Labels: kind: bug, P3, theme: code cleanup

#627 - [Feature]: Allow sdlog (or scalar multiplier) as estimable

Issue - State: open - Opened by kellijohnson-NOAA 4 months ago
Labels: kind: feature, status: wishlist, P3, theme: NLL refactor

#627 - [Feature]: Allow sdlog (or scalar multiplier) as estimable

Issue - State: open - Opened by kellijohnson-NOAA 4 months ago
Labels: kind: feature, status: wishlist, P3, theme: NLL refactor

#626 - GHA: add a workflow to build the pkgdown site on PR

Pull Request - State: closed - Opened by Bai-Li-NOAA 4 months ago - 3 comments

#626 - GHA: add a workflow to build the pkgdown site on PR

Pull Request - State: open - Opened by Bai-Li-NOAA 4 months ago - 2 comments

#625 - doc: add FIMS documentation vignette and organize vignettes

Pull Request - State: open - Opened by Bai-Li-NOAA 4 months ago - 2 comments

#625 - doc: add FIMS documentation vignette and organize vignettes

Pull Request - State: closed - Opened by Bai-Li-NOAA 4 months ago - 2 comments

#624 - Connect densities rebase of PR #619

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment

#624 - Connect densities rebase of PR #619

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment

#623 - 608 variable vector tests documentation

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 2 comments

#623 - 608 variable vector tests documentation

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 2 comments

#622 - [Bug]: FIMS runs regardless of the length of the `log_obs_error` and `log_Fmort` inputs

Issue - State: open - Opened by Bai-Li-NOAA 4 months ago - 1 comment
Labels: kind: bug, P1

#621 - [Developer Issue]: wrapper function to run a FIMS model

Issue - State: open - Opened by kellijohnson-NOAA 4 months ago
Labels: kind: feature, P2, theme: r interface

#621 - [Developer Issue]: wrapper function to run a FIMS model

Issue - State: open - Opened by kellijohnson-NOAA 4 months ago - 2 comments
Labels: kind: feature, P2, theme: r interface

#620 - fix: use correct way of getting tmb output

Pull Request - State: open - Opened by k-doering-NOAA 4 months ago - 2 comments
Labels: kind: bug, vignette

#620 - fix: use correct way of getting tmb output

Pull Request - State: open - Opened by k-doering-NOAA 4 months ago - 2 comments
Labels: kind: bug, vignette

#619 - Connect densities

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 6 comments

#618 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 4 months ago - 2 comments

#618 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 4 months ago - 2 comments

#617 - [Feature]: calculate model start/end time, model call, and version of FIMS

Issue - State: open - Opened by k-doering-NOAA 4 months ago - 4 comments
Labels: kind: feature, status: triage_needed

#617 - [Feature]: calculate model start/end time, model call, and version of FIMS

Issue - State: open - Opened by k-doering-NOAA 4 months ago - 7 comments
Labels: kind: feature, theme: r interface

#616 - [Bug]: Difference in point estimates from tmb sdreport vs. tmb output object

Issue - State: closed - Opened by k-doering-NOAA 4 months ago - 26 comments
Labels: kind: bug, kind: vignette, theme: r interface

#615 - fix rec_nll evaluate bug

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 3 comments
Labels: kind: bug

#615 - fix rec_nll evaluate bug

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 3 comments
Labels: kind: bug

#614 - [Bug]: recruitment nll

Issue - State: open - Opened by Andrea-Havron-NOAA 4 months ago - 9 comments
Labels: kind: bug

#614 - [Bug]: recruitment nll

Issue - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 9 comments
Labels: kind: bug

#613 - [Developer Issue]: Add enum for nll_type

Issue - State: open - Opened by Andrea-Havron-NOAA 4 months ago
Labels: kind: feature, theme: NLL refactor, sprint 2

#612 - [Developer Issue]: Add documentation to new files from refactor-distributions

Issue - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment
Labels: kind: documentation, theme: NLL refactor, sprint 1

#611 - Fix codecov (addresses #605)

Pull Request - State: closed - Opened by k-doering-NOAA 4 months ago - 6 comments

#610 - Refactor distributions

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 2 comments

#609 - [Developer Issue]: complete tests in test-unit-rcpp-interface-base-variable-vector

Issue - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment
Labels: kind: test case, theme: NLL refactor, sprint 1

#608 - [Developer Issue]: Add documentation to rcpp_interface_base on dev branch

Issue - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment
Labels: kind: documentation, theme: NLL refactor, sprint 1

#608 - [Developer Issue]: Add documentation to rcpp_interface_base on dev branch

Issue - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment
Labels: kind: documentation, theme: NLL refactor, sprint 1

#607 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 4 months ago - 1 comment

#606 - Make the R tests more modular

Issue - State: open - Opened by Bai-Li-NOAA 4 months ago - 4 comments
Labels: kind: test case, P3

#606 - Make the R tests more modular

Issue - State: closed - Opened by Bai-Li-NOAA 4 months ago - 4 comments
Labels: kind: test case, P3, theme: code cleanup

#605 - [Developer Issue]: code coverage not getting calculated for pull requests

Issue - State: closed - Opened by iantaylor-NOAA 4 months ago - 2 comments
Labels: kind: bug

#604 - Add vector variable to FIMS

Pull Request - State: open - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment

#604 - Add vector variable to FIMS

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 1 comment

#603 - Add vector variable to FIMS

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 4 months ago - 2 comments

#602 - fims::Vector operators and implicit scalar conversion

Pull Request - State: open - Opened by msupernaw 4 months ago - 6 comments

#601 - catch dev branch up with main

Pull Request - State: closed - Opened by Andrea-Havron-NOAA 4 months ago - 2 comments

#600 - [Feature]: estimate initial depletion

Issue - State: open - Opened by ChristineStawitz-NOAA 4 months ago
Labels: case study features

#599 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 5 months ago - 2 comments

#599 - Style code and document

Pull Request - State: closed - Opened by ChristineStawitz-NOAA 5 months ago - 2 comments

#598 - [Developer Issue]: GHA: call-doc-and-style-r workflow failed to run due to SAML single sign-on

Issue - State: closed - Opened by Bai-Li-NOAA 5 months ago - 2 comments
Labels: status: triage_needed

#598 - [Developer Issue]: GHA: call-doc-and-style-r workflow failed to run due to SAML single sign-on

Issue - State: closed - Opened by Bai-Li-NOAA 5 months ago - 2 comments
Labels: status: triage_needed