nmfs-ost/ss3-doc issues and pull requests

#212 - update date for release

Pull Request - State: closed - Opened by e-perl-NOAA 8 months ago

#211 - update tags for v3.30.22.1 release

Pull Request - State: closed - Opened by e-perl-NOAA 8 months ago

#210 - change log

Pull Request - State: closed - Opened by e-perl-NOAA 9 months ago
Labels: documentation, Manual

#209 - Custom output filenames

Pull Request - State: closed - Opened by e-perl-NOAA 9 months ago - 2 comments
Labels: documentation, Manual

#208 - Cv to lognormal se correction

Pull Request - State: closed - Opened by e-perl-NOAA 9 months ago - 3 comments
Labels: Manual

#207 - Improve text about CV to SE conversion for lognormal distributions

Issue - State: closed - Opened by Cole-Monnahan-NOAA 9 months ago - 1 comment

#206 - Improve documentation of lambdas

Pull Request - State: closed - Opened by e-perl-NOAA 10 months ago
Labels: documentation, Manual

#205 - add info to Q bias adjust section about turning on float

Pull Request - State: closed - Opened by e-gugliotti-NOAA 10 months ago - 4 comments
Labels: documentation, Manual

#204 - Change org and repo names for migration to GHEC

Pull Request - State: closed - Opened by e-gugliotti-NOAA 10 months ago

#203 - VLAB links need checking and updating

Issue - State: closed - Opened by Rick-Methot-NOAA 10 months ago - 1 comment

#202 - Update F method in section 8.7 #201

Pull Request - State: closed - Opened by e-gugliotti-NOAA 11 months ago - 4 comments
Labels: documentation, Manual

#201 - updated text to describe F method in section 8.7

Issue - State: closed - Opened by Rick-Methot-NOAA 11 months ago

#200 - Doc to ss3 doc

Pull Request - State: closed - Opened by e-gugliotti-NOAA 11 months ago - 1 comment
Labels: 3.30.22 release

#199 - Add auto release workflow

Pull Request - State: open - Opened by e-gugliotti-NOAA 12 months ago - 5 comments
Labels: documentation, workflows, 3.30.22 release

#198 - Change ss to ss3 in doc; also change gender to sex in tutorial

Pull Request - State: closed - Opened by e-gugliotti-NOAA 12 months ago - 6 comments
Labels: documentation, Manual, User Guides, 3.30.22 release

#197 - add note about retention required for part = 2

Pull Request - State: closed - Opened by iantaylor-NOAA 12 months ago
Labels: documentation, 3.30.22 release

#196 - add changes issue #185

Pull Request - State: closed - Opened by e-perl-NOAA 12 months ago
Labels: documentation, Manual, 3.30.22 release

#195 - Add description of new forecast file year control format

Issue - State: closed - Opened by iantaylor-NOAA 12 months ago - 5 comments
Labels: forecast, 3.30.22 release

#194 - Fix ALK section to say it is disabled

Pull Request - State: closed - Opened by e-gugliotti-NOAA 12 months ago - 1 comment
Labels: documentation

#193 - A2 description fix

Pull Request - State: closed - Opened by e-gugliotti-NOAA about 1 year ago
Labels: documentation, Manual, User Guides

#192 - Fix minor typos

Pull Request - State: closed - Opened by arni-magnusson about 1 year ago

#191 - Add better guidance about phases - from ICES course

Issue - State: open - Opened by e-perl-NOAA about 1 year ago - 2 comments
Labels: documentation, Manual

#190 - Fix issue #189

Pull Request - State: closed - Opened by e-gugliotti-NOAA about 1 year ago - 1 comment
Labels: documentation, Manual

#189 - Additional documentation needed for mean length or body weight at age

Issue - State: closed - Opened by e-gugliotti-NOAA about 1 year ago
Labels: documentation, Manual, 3.30.22 release

#188 - Update text about density dependence

Issue - State: closed - Opened by iantaylor-NOAA about 1 year ago - 2 comments
Labels: 3.30.22 release

#187 - Change mentions of ss executable to ss3

Issue - State: closed - Opened by e-gugliotti-NOAA about 1 year ago
Labels: documentation, Manual

#186 - Fix typo in Linf equation

Pull Request - State: closed - Opened by arni-magnusson about 1 year ago - 6 comments
Labels: Manual, User Guides

#185 - provide recommendations on composition tails and settings

Issue - State: closed - Opened by Rick-Methot-NOAA about 1 year ago - 5 comments
Labels: documentation, 3.30.22 release

#184 - Fix spelling, quotes, and comma

Pull Request - State: closed - Opened by kellijohnson-NOAA about 1 year ago - 2 comments
Labels: Priority: Low

#183 - add hyperlinks to pg 26

Pull Request - State: closed - Opened by e-gugliotti-NOAA about 1 year ago - 10 comments
Labels: documentation, Manual

#182 - add time-block description

Pull Request - State: closed - Opened by e-gugliotti-NOAA about 1 year ago
Labels: Manual

#181 - Block definition endyr

Issue - State: closed - Opened by e-gugliotti-NOAA about 1 year ago - 2 comments
Labels: Manual, 3.30.22 release

#180 - improve documentation of lambdas

Issue - State: closed - Opened by iantaylor-NOAA about 1 year ago - 1 comment
Labels: documentation, Priority: Low

#179 - Special surveys/platoon stdev/catch likelihoods

Pull Request - State: closed - Opened by e-gugliotti-NOAA about 1 year ago - 3 comments
Labels: documentation, Manual

#178 - Re-do PR #147 without \usepackage[luamode]{tagpdf}

Pull Request - State: closed - Opened by e-gugliotti-NOAA about 1 year ago

#177 - texlive pdf build not working

Issue - State: closed - Opened by e-perl-NOAA about 1 year ago - 2 comments
Labels: bug, Priority: High

#176 - Add Platoon StDev Ratio parameter to list in 9control.tex

Issue - State: closed - Opened by nschindler-noaa about 1 year ago
Labels: 3.30.22 release

#175 - include "catch" in list of likelihood components

Issue - State: closed - Opened by iantaylor-NOAA about 1 year ago - 2 comments
Labels: documentation, Priority: Low, 3.30.22 release

#174 - Update forecast to include more control for recr dist in forecast

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 4 comments
Labels: documentation, Manual

#173 - Add documentation for new capability to average MG params over a range of years in forecast

Issue - State: closed - Opened by e-gugliotti-NOAA over 1 year ago
Labels: documentation, Manual, 3.30.22 release

#172 - add table row hover background

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 7 comments
Labels: documentation, Manual, website

#171 - update 2DAR section

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago
Labels: documentation, Manual

#170 - fix double normal selectivity section

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 3 comments
Labels: documentation, Manual

#169 - revise description of selectivity 24 parameters 5 and 6?

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 3 comments
Labels: documentation, User Guides, Priority: Medium, 3.30.22 release

#168 - improve text about lambdas in the User Manual

Issue - State: open - Opened by iantaylor-NOAA over 1 year ago - 2 comments
Labels: documentation, help wanted, Manual, Priority: Low

#167 - Reroute old manual url to new manual

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 1 comment
Labels: website

#166 - update workflows & correct html navbar

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 1 comment
Labels: workflows, website

#165 - update workflows & correct html navbar

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago
Labels: workflows, website

#164 - merge changes made on directly on main into dev

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago

#163 - Dev

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago

#162 - 2d-ar1 selex not well documented

Issue - State: closed - Opened by jimianelli over 1 year ago - 5 comments
Labels: documentation

#161 - automate creating release versions of manual more easily

Issue - State: open - Opened by k-doering-NOAA over 2 years ago
Labels: documentation, enhancement, status: in progress

#160 - Transfer workflows with history

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 2 comments

#159 - Transfer workflows from workflows repo

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 1 comment

#158 - add recent updates from dev into main

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 2 comments
Labels: documentation

#157 - Update html navbar

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 2 comments
Labels: documentation

#156 - Navigation bar in html is ambiguous

Issue - State: closed - Opened by kellijohnson-NOAA over 1 year ago - 1 comment
Labels: documentation, Manual, Priority: Low

#155 - correct date in release.html

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago
Labels: documentation

#154 - improve documentation of F_method 4 (fleet-specific hybrid F)

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 6 comments
Labels: documentation, User Guides, Priority: Low, 3.30.22 release

#153 - Changes need for SS3 PR 440

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago

#152 - Revert "add font changes from dev"

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago

#151 - add font changes from dev

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago

#150 - change font in html from Georgia to Arial

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 6 comments

#149 - Add additional detail about spawn and settlement month potential conflicts

Issue - State: open - Opened by e-gugliotti-NOAA over 1 year ago - 2 comments
Labels: documentation

#148 - Review and update 5converting.tex & 14r4ss.tex

Issue - State: open - Opened by e-gugliotti-NOAA over 1 year ago
Labels: documentation, Manual

#147 - Changes need for SS3 PR 421

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 1 comment

#146 - Changes need for SS3 PR 418

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 1 comment

#145 - add link to ss_trans executable

Pull Request - State: closed - Opened by iantaylor-NOAA over 1 year ago

#144 - Changes need for SS3 PR 413

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 1 comment

#143 - Do we need two versions of the html documentation?

Issue - State: closed - Opened by kellijohnson-NOAA over 1 year ago - 12 comments
Labels: question, Manual, Priority: Low

#142 - Changes need for SS3 PR 410

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 1 comment

#141 - add sex_ratio is by area to report:47

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 6 comments
Labels: documentation, 3.30.21 release

#140 - Add information about sex_ratio by area to output section.

Issue - State: closed - Opened by e-gugliotti-NOAA over 1 year ago
Labels: documentation, 3.30.21 release

#139 - Partition weighting

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago - 3 comments
Labels: documentation, 3.30.21 release

#138 - Add -hess_step info

Pull Request - State: closed - Opened by e-gugliotti-NOAA over 1 year ago
Labels: documentation, 3.30.21 release

#137 - document new partition weighting option

Issue - State: closed - Opened by iantaylor-NOAA over 1 year ago - 1 comment
Labels: 3.30.21 release

#136 - do we need to keep producing the PDF version of the User Manual?

Issue - State: open - Opened by iantaylor-NOAA over 1 year ago - 5 comments
Labels: question, User Guides, Priority: Low

#135 - problem compiling the User Manual on my local computer

Issue - State: open - Opened by iantaylor-NOAA over 1 year ago - 8 comments

#134 - add change log link to User Manual and README files?

Issue - State: open - Opened by iantaylor-NOAA over 1 year ago

#133 - add new dynamic SB0 depletion option

Issue - State: closed - Opened by chantelwetzel-noaa over 1 year ago - 1 comment

#132 - improve example input for "Controls for Variance of Derived Quantities"

Pull Request - State: closed - Opened by iantaylor-NOAA over 1 year ago
Labels: documentation, enhancement

#131 - add information on use of ADMB -hess_step

Issue - State: closed - Opened by Rick-Methot-NOAA over 1 year ago - 24 comments
Labels: documentation, 3.30.21 release

#130 - Explain effect of time-varying biology on steepness

Issue - State: open - Opened by Rick-Methot-NOAA almost 2 years ago
Labels: Manual, User Guides

#129 - better document process for updating the user manual after a release

Issue - State: open - Opened by iantaylor-NOAA almost 2 years ago - 3 comments
Labels: documentation, User Guides

#128 - replace \pageref{} with \hyperref{}

Pull Request - State: closed - Opened by iantaylor-NOAA almost 2 years ago - 1 comment

#127 - \pageref{} does not work in html

Issue - State: closed - Opened by kellijohnson-NOAA almost 2 years ago - 3 comments
Labels: bug, documentation, Priority: Low

#126 - document new warning file format

Issue - State: closed - Opened by k-doering-NOAA about 2 years ago - 1 comment
Labels: 3.30.20 release

#125 - Length bins

Pull Request - State: closed - Opened by iantaylor-NOAA about 2 years ago
Labels: documentation, 3.30.20 release

#124 - Size frequency modifications to the manual detailing Dirichlet and MV Tweedie data fitting

Pull Request - State: closed - Opened by chantelwetzel-noaa about 2 years ago - 1 comment
Labels: 3.30.20 release

#123 - Update Dirichlet-multinomial guidance

Issue - State: closed - Opened by James-Thorson-NOAA about 2 years ago - 5 comments
Labels: 3.30.20 release

#122 - Changes need for SS3 PR 357

Issue - State: closed - Opened by iantaylor-NOAA about 2 years ago
Labels: 3.30.20 release

#121 - check that old vlab links have been replaced with links to github

Issue - State: closed - Opened by k-doering-NOAA about 2 years ago
Labels: 3.30.20 release

#119 - Document in manual guidance for Bmark years biology

Issue - State: closed - Opened by k-doering-NOAA about 2 years ago
Labels: Manual, 3.30.20 release

#113 - correction needed in 2DAR section

Issue - State: closed - Opened by Rick-Methot-NOAA over 2 years ago - 1 comment
Labels: bug, documentation, Manual, 3.30.20 release

#112 - Make the tables within the html manual easier to read by highlighting on mouseover

Issue - State: closed - Opened by k-doering-NOAA over 2 years ago
Labels: enhancement, Manual

#109 - expand on and clean up predator fleet text

Issue - State: open - Opened by k-doering-NOAA over 2 years ago - 7 comments
Labels: documentation, enhancement, Manual, 3.30.20 release

#107 - SS3 organization landing page

Issue - State: closed - Opened by kellijohnson-NOAA over 2 years ago - 7 comments
Labels: enhancement, question

#99 - Document parameter devs approach implemented in 3.30.13

Issue - State: open - Opened by k-doering-NOAA over 2 years ago - 1 comment
Labels: Manual, 3.30.20 release

#95 - document bioecon forecasting feature

Issue - State: open - Opened by k-doering-NOAA over 2 years ago
Labels: 3.30.20 release

#94 - Aesthetic changes to html nav bar

Issue - State: open - Opened by k-doering-NOAA over 2 years ago
Labels: enhancement, Manual

GitHub / nmfs-ost/ss3-doc issues and pull requests