nmdp-bioinformatics/py-ard issues and pull requests

#232 - Redux with the "lg", "lgx", and "G" option returns incorrect designation for "B*56:01" for IMGTHLA database version 3.51.0

Issue - State: closed - Opened by gbiagini over 1 year ago - 6 comments

#232 - Redux with the "lg", "lgx", and "G" option returns incorrect designation for "B*56:01" for IMGTHLA database version 3.51.0

Issue - State: closed - Opened by gbiagini over 1 year ago - 6 comments

#231 - Ready for Release 1.0.0

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#231 - Ready for Release 1.0.0

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#230 - Redux with a "P" option does not return P-groups for two-field or three-field alleles

Issue - State: open - Opened by gbiagini over 1 year ago - 1 comment
Labels: bug

#230 - Redux with a "P" option does not return P-groups for two-field or three-field alleles

Issue - State: closed - Opened by gbiagini over 1 year ago - 7 comments
Labels: bug

#229 - Serology redux mode

Issue - State: closed - Opened by lcreteig over 1 year ago - 5 comments
Labels: enhancement

#229 - Serology redux mode

Issue - State: open - Opened by lcreteig over 1 year ago - 1 comment
Labels: enhancement

#228 - Missing requirements.txt in distribution

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#228 - Missing requirements.txt in distribution

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#227 - Package not installing because of missing requirements.txt

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago - 4 comments
Labels: bug

#227 - Package not installing because of missing requirements.txt

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago - 4 comments
Labels: bug

#226 - Batch reduce fixes

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#226 - Batch reduce fixes

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#225 - Bach processing adding locus name to serological typing erroneously

Issue - State: closed - Opened by amadboul-nmdp over 1 year ago
Labels: bug

#224 - Decode MAC and CWD 2.0 Reductions

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#224 - Decode MAC and CWD 2.0 Reductions

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#223 - Support exon redux using WMDA standards for two-field shortnulls

Issue - State: open - Opened by lgragert over 1 year ago - 1 comment

#223 - Support exon redux using WMDA standards for two-field shortnulls

Issue - State: closed - Opened by lgragert over 1 year ago - 2 comments

#222 - Allow reduction to 'CIWD'

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#221 - Support reducing glstring column in a csv file

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#221 - Support reducing glstring column in a csv file

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#220 - add "glstring" as an input column to pyard-reduce-csv

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago
Labels: enhancement

#220 - add "glstring" as an input column to pyard-reduce-csv

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago
Labels: enhancement

#219 - Documentation and cleanup for 1.0

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement, documentation

#219 - Documentation and cleanup for 1.0

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement, documentation

#218 - Performance Updates

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement, performance

#218 - Performance Updates

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement, performance

#217 - problem with exception handling

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago - 1 comment
Labels: bug

#217 - problem with exception handling

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago - 1 comment
Labels: bug

#216 - P group redux

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#216 - P group redux

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#215 - Refactor to 1.0 (Release Candidate Version)

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement, release

#215 - Refactor to 1.0 (Release Candidate Version)

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement, release

#214 - Generate sample config file

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#214 - Generate sample config file

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#213 - Change default cache directory + generate sample config

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#213 - Change default cache directory + generate sample config

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#212 - Correct syntax for Serology A10?

Issue - State: closed - Opened by SeanStagg-NMDP over 1 year ago - 3 comments

#212 - Correct syntax for Serology A10?

Issue - State: closed - Opened by SeanStagg-NMDP over 1 year ago - 3 comments

#211 - Output glstring in batchmode

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#210 - Cli Tools improvements

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement

#210 - Cli Tools improvements

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement

#209 - accept `--skip-mac` option in `pyard-import`

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#209 - accept `--skip-mac` option in `pyard-import`

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#208 - run `pyard` without `-r` option shows all reductions

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#208 - run `pyard` without `-r` option shows all reductions

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#207 - show IMGT version for latest in pyard-status

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#206 - show `py-ard` version with `-v` option

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#206 - show `py-ard` version with `-v` option

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago

#205 - Verify correct IMGT DB version

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#205 - Verify correct IMGT DB version

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#204 - Allow user-defined broad splits table

Issue - State: open - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement, Post 1.0.0

#204 - Allow user-defined broad splits table

Issue - State: open - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement, Post 1.0.0

#203 - Broads and Splits

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement

#203 - Broads and Splits

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug, enhancement

#202 - Change default cache directory

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago - 2 comments
Labels: enhancement

#202 - Change default cache directory

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago - 2 comments
Labels: enhancement

#201 - Notify where the database is being created

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#201 - Notify where the database is being created

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#200 - Implement P group redux type

Issue - State: closed - Opened by lgragert over 1 year ago - 3 comments
Labels: enhancement

#200 - Implement P group redux type

Issue - State: closed - Opened by lgragert over 1 year ago - 3 comments
Labels: enhancement

#199 - pyard-status need to be updated to stop looking for tables that no longer exist

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago - 2 comments
Labels: bug

#199 - pyard-status need to be updated to stop looking for tables that no longer exist

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago - 2 comments
Labels: bug

#198 - stop using ~/.pyard

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago - 2 comments

#198 - stop using ~/.pyard

Issue - State: closed - Opened by mmaiers-nmdp over 1 year ago - 2 comments

#197 - Special case 3130->3131 version of allelelist.txt

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#197 - Special case 3130->3131 version of allelelist.txt

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#196 - pyard cli improvements

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#195 - New api to show broad/splits

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#195 - New api to show broad/splits

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#194 - Serology as Array when Sister Serotypes exist

Issue - State: closed - Opened by SeanStagg-NMDP over 1 year ago - 4 comments

#194 - Serology as Array when Sister Serotypes exist

Issue - State: closed - Opened by SeanStagg-NMDP over 1 year ago - 4 comments

#193 - py-ard fails importing 3130 version

Issue - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: bug

#192 - Fix xx_codes for broad/split

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: bug

#192 - Fix xx_codes for broad/split

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: bug

#191 - DQB1*05:XX Expansion

Issue - State: closed - Opened by rsajulga-nmdp over 1 year ago - 6 comments
Labels: bug

#191 - DQB1*05:XX Expansion

Issue - State: closed - Opened by rsajulga-nmdp over 1 year ago - 6 comments
Labels: bug

#190 - Store IMGT DB Version Number

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#190 - Store IMGT DB Version Number

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#189 - Don't save the p_group table

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#189 - Don't save the p_group table

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago - 1 comment
Labels: enhancement

#188 - Remove lg tables and corresponding dicts

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#188 - Remove lg tables and corresponding dicts

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago
Labels: enhancement

#187 - Up the Cache size to 5mil

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago

#187 - Up the Cache size to 5mil

Pull Request - State: closed - Opened by pbashyal-nmdp over 1 year ago

#186 - Add `blend` endpoint to the service.

Pull Request - State: closed - Opened by pbashyal-nmdp almost 2 years ago
Labels: enhancement

#186 - Add `blend` endpoint to the service.

Pull Request - State: closed - Opened by pbashyal-nmdp almost 2 years ago
Labels: enhancement

#185 - Bump wheel from 0.37.1 to 0.38.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#185 - Bump wheel from 0.37.1 to 0.38.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#184 - Bump version to 0.8.2

Pull Request - State: closed - Opened by pbashyal-nmdp almost 2 years ago

#184 - Bump version to 0.8.2

Pull Request - State: closed - Opened by pbashyal-nmdp almost 2 years ago

#183 - Support short null for `exon` mode

Pull Request - State: closed - Opened by pbashyal-nmdp almost 2 years ago
Labels: bug

#183 - Support short null for `exon` mode

Pull Request - State: closed - Opened by pbashyal-nmdp almost 2 years ago
Labels: bug

#182 - DPB1*57:01:01G Error

Issue - State: closed - Opened by rsajulga-nmdp almost 2 years ago - 2 comments

#182 - DPB1*57:01:01G Error

Issue - State: closed - Opened by rsajulga-nmdp almost 2 years ago - 2 comments

#181 - pyard-reduce-csv should output glstring

Issue - State: closed - Opened by mmaiers-nmdp almost 2 years ago - 1 comment
Labels: enhancement

#181 - pyard-reduce-csv should output glstring

Issue - State: closed - Opened by mmaiers-nmdp almost 2 years ago - 1 comment
Labels: enhancement

#180 - pyard-reduce-csv config cant turn off compression

Issue - State: closed - Opened by mmaiers-nmdp almost 2 years ago - 1 comment
Labels: bug

#179 - Support DRBX Blending

Pull Request - State: closed - Opened by pbashyal-nmdp about 2 years ago
Labels: enhancement

GitHub / nmdp-bioinformatics/py-ard issues and pull requests