Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nmdp-bioinformatics/phycus issues and pull requests
#127 - Bump gson from 2.8.1 to 2.8.9 in /client/java/freq-client
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#126 - phycus shiny app
Pull Request -
State: open - Opened by csexton-nmdp about 2 years ago
#125 - Doc
Pull Request -
State: closed - Opened by mmaiers-nmdp over 2 years ago
#124 - Adhikasp feature/swagger version
Pull Request -
State: closed - Opened by mmaiers-nmdp over 2 years ago
Labels: enhancement
#123 - error when starting db
Issue -
State: closed - Opened by mmaiers-nmdp over 2 years ago
- 1 comment
#122 - docker-compose error
Issue -
State: closed - Opened by mmaiers-nmdp over 2 years ago
- 1 comment
#121 - Docker build on Windows
Issue -
State: open - Opened by mmaiers-nmdp over 2 years ago
#120 - README.md needs to be updated to reflect running via docker
Issue -
State: open - Opened by mmaiers-nmdp over 2 years ago
- 1 comment
#119 - The python module in the client needs to be renamed
Issue -
State: open - Opened by mmaiers-nmdp over 2 years ago
- 1 comment
Labels: enhancement
#118 - javaGui is not in master
Issue -
State: closed - Opened by mmaiers-nmdp over 2 years ago
- 2 comments
#117 - Swagger-codegen can't make api/bin #2
Issue -
State: closed - Opened by dpratt3 over 2 years ago
- 2 comments
#116 - add population ID to import client
Pull Request -
State: closed - Opened by mmaiers-nmdp about 3 years ago
#115 - Bump commons-io from 2.6 to 2.7 in /client/java/freq-tools
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies
#114 - Bump junit from 4.12 to 4.13.1 in /client/java/freq-client
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#113 - Bump junit from 3.8.1 to 4.13.1 in /client/java/freq-tools
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#112 - Bump junit from 4.12 to 4.13.1 in /client/java
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#111 - Final commit Java client
Pull Request -
State: closed - Opened by kaeaton almost 4 years ago
- 1 comment
#110 - updated docs
Pull Request -
State: closed - Opened by mmaiers-nmdp about 4 years ago
#109 - [WIP] Feature KeyCloak - M01
Pull Request -
State: open - Opened by scout23DF over 4 years ago
#108 - Swagger config: add build version
Pull Request -
State: closed - Opened by adhikasp over 4 years ago
- 1 comment
#107 - Add minimum value for haplotype frequency total
Pull Request -
State: closed - Opened by kaeaton almost 5 years ago
#106 - Ion
Pull Request -
State: closed - Opened by kaeaton almost 5 years ago
#105 - Test issue
Issue -
State: closed - Opened by mmaiers-nmdp almost 5 years ago
#104 - Pop search
Pull Request -
State: closed - Opened by kaeaton almost 5 years ago
#103 - Phycus files (as opposed to csv files)
Pull Request -
State: closed - Opened by kaeaton almost 5 years ago
#102 - Error fixes
Pull Request -
State: closed - Opened by kaeaton almost 5 years ago
#101 - Gui receipts
Pull Request -
State: closed - Opened by kaeaton almost 5 years ago
#100 - Display build version in Swagger UI
Issue -
State: closed - Opened by jbrelsf2-nmdp about 5 years ago
- 2 comments
#99 - have the Java UI present the list of label types
Issue -
State: open - Opened by mmaiers-nmdp about 5 years ago
#98 - Add constraints to labels
Issue -
State: open - Opened by mmaiers-nmdp about 5 years ago
- 4 comments
#97 - Updating README.md
Pull Request -
State: closed - Opened by kaeaton about 5 years ago
#96 - Fix the Java CLI
Pull Request -
State: closed - Opened by kaeaton about 5 years ago
#95 - Adding the GUI
Pull Request -
State: closed - Opened by kaeaton about 5 years ago
- 4 comments
#94 - Fix bad merge between quality calculator and spring boot 2 branches
Pull Request -
State: closed - Opened by fscheel over 5 years ago
#93 - Migrate to spring boot2
Pull Request -
State: closed - Opened by fscheel over 5 years ago
#92 - Remove label list usage from java client
Pull Request -
State: closed - Opened by fscheel over 5 years ago
#91 - Remove LabelList usage from the Java client
Pull Request -
State: closed - Opened by kaeaton over 5 years ago
- 9 comments
#90 - Update the Java client to accommodate new LabelData structure
Pull Request -
State: closed - Opened by kaeaton over 5 years ago
- 5 comments
#89 - Add quality metric calculation
Pull Request -
State: closed - Opened by fscheel over 5 years ago
#88 - SAM_POP should be an attribute of the population not an HFC
Issue -
State: open - Opened by mmaiers-nmdp over 5 years ago
Labels: swagger-spec
#87 - the return structure from post /hfc contains ids that don't have their own endpoints
Issue -
State: open - Opened by mmaiers-nmdp over 5 years ago
Labels: swagger-spec
#86 - Update SwaggerDocumentationConfig.java
Pull Request -
State: closed - Opened by sauter over 5 years ago
- 1 comment
#85 - Remove unnecessary definition of list only types
Pull Request -
State: closed - Opened by fscheel over 5 years ago
#84 - Lambda
Pull Request -
State: closed - Opened by mhalagan over 5 years ago
- 1 comment
#83 - Perlclient
Pull Request -
State: closed - Opened by mmaiers-nmdp over 5 years ago
#82 - Added the new repository for pull access
Pull Request -
State: closed - Opened by jbrelsf2-nmdp over 5 years ago
#81 - Create maven build when creating docker image
Pull Request -
State: closed - Opened by fscheel almost 6 years ago
Labels: hackathon
#80 - Change "Contact" URL to github project
Issue -
State: closed - Opened by fscheel almost 6 years ago
- 1 comment
Labels: hackathon
#79 - Quality Tags
Issue -
State: open - Opened by mmaiers-nmdp almost 6 years ago
- 5 comments
Labels: hackathon
#78 - Push docker image to docker hub
Pull Request -
State: closed - Opened by fscheel almost 6 years ago
#77 - Flyway database migration
Pull Request -
State: closed - Opened by fscheel almost 6 years ago
#76 - Add building of docker image to circle ci
Pull Request -
State: closed - Opened by fscheel about 6 years ago
#75 - How to handle database migrations?
Issue -
State: closed - Opened by fscheel about 6 years ago
- 1 comment
Labels: question
#74 - Save enums as strings in the database
Pull Request -
State: closed - Opened by fscheel about 6 years ago
- 1 comment
#73 - Update curation-swagger-spec.yaml
Pull Request -
State: closed - Opened by sauter about 6 years ago
#72 - Add a .gitattributes file
Pull Request -
State: closed - Opened by fscheel about 6 years ago
#71 - Add instructions about local development with Windows
Pull Request -
State: closed - Opened by fscheel about 6 years ago
#70 - How to run PHYCUS locally?
Issue -
State: closed - Opened by fscheel about 6 years ago
- 1 comment
#69 - Make perl client usable
Pull Request -
State: closed - Opened by fscheel about 6 years ago
- 2 comments
#68 - PHYCUS instance currenty returns error 500
Issue -
State: closed - Opened by fscheel about 6 years ago
- 3 comments
#67 - Repairing merge mess
Pull Request -
State: closed - Opened by mpresteg over 6 years ago
- 1 comment
#66 - Merge pull request #7 from mpresteg/cohort-name
Pull Request -
State: closed - Opened by mpresteg over 6 years ago
- 1 comment
#65 - Remove "CohortData" from HFCurationRequest and make CohortID(integer) required
Issue -
State: closed - Opened by mmaiers-nmdp over 6 years ago
- 1 comment
Labels: swagger-spec
#64 - Make PopulationRequest.name a required field
Issue -
State: closed - Opened by mmaiers-nmdp over 6 years ago
- 1 comment
Labels: swagger-spec
#63 - Create Cohort API in the same pattern of Population API
Issue -
State: closed - Opened by mmaiers-nmdp over 6 years ago
- 1 comment
Labels: swagger-spec
#62 - Reorg docs
Pull Request -
State: closed - Opened by mmaiers-nmdp over 6 years ago
#61 - Update Swagger Codegen
Pull Request -
State: closed - Opened by mpresteg over 6 years ago
#60 - Socket timeout when pushing large frequency sets
Issue -
State: closed - Opened by mpresteg over 6 years ago
- 1 comment
#59 - Fix Python client
Pull Request -
State: closed - Opened by pbashyal-nmdp over 6 years ago
#58 - Use Swagger Codegen Maven Plugin
Pull Request -
State: closed - Opened by pbashyal-nmdp over 6 years ago
#57 - Connect an actual consuming client
Issue -
State: open - Opened by mpresteg over 6 years ago
- 1 comment
#56 - Dockerization of application
Pull Request -
State: closed - Opened by jbrelsf2-nmdp over 6 years ago
- 1 comment
#55 - Removed unnecessary maven dependencies and added to .gitignore
Pull Request -
State: closed - Opened by mpresteg over 6 years ago
- 2 comments
#54 - added Java client
Pull Request -
State: closed - Opened by mpresteg over 6 years ago
- 3 comments
#53 - Manually create error 400
Pull Request -
State: closed - Opened by fscheel over 6 years ago
- 1 comment
#52 - Phycus and local
Pull Request -
State: closed - Opened by sauter over 6 years ago
#51 - Delete Submission included
Pull Request -
State: closed - Opened by HofmannJ over 6 years ago
#50 - Label and method list modeling is inconvenient
Issue -
State: closed - Opened by fscheel over 6 years ago
Labels: swagger-spec
#49 - Make java automatically validate required elements
Pull Request -
State: closed - Opened by fscheel over 6 years ago
#48 - TypeOfAccess is marked required but comment says there will be a default, if no provided
Issue -
State: open - Opened by fscheel over 6 years ago
- 2 comments
Labels: swagger-spec
#47 - Should the clients be checked in with the service?
Issue -
State: closed - Opened by mpresteg over 6 years ago
- 3 comments
Labels: question
#46 - added cohort name
Pull Request -
State: closed - Opened by mpresteg over 6 years ago
#45 - Do we need a more general mechanism for selecting / identifying frequency sets
Issue -
State: open - Opened by mpresteg over 6 years ago
- 6 comments
Labels: question
#44 - Add name and descriptor to Cohort
Issue -
State: closed - Opened by mpresteg over 6 years ago
- 1 comment
Labels: enhancement
#43 - Delete based on submission ID
Pull Request -
State: closed - Opened by jasonbrelsford over 6 years ago
#42 - Fix error500 on non existing entities
Pull Request -
State: closed - Opened by fscheel over 6 years ago
#41 - Allow additional information in error responses
Issue -
State: open - Opened by fscheel over 6 years ago
- 1 comment
Labels: swagger-spec
#40 - Consider / implement a strategy for avoiding duplicate entities
Issue -
State: open - Opened by mpresteg over 6 years ago
- 3 comments
Labels: defer
#39 - Create a delete endpoint
Issue -
State: closed - Opened by mpresteg over 6 years ago
- 1 comment
#37 - Check correct data member for null
Pull Request -
State: closed - Opened by fscheel over 6 years ago
#21 - perl client
Issue -
State: closed - Opened by hpeberhard over 6 years ago
- 1 comment
#20 - Add Perl client
Pull Request -
State: closed - Opened by mmaiers-nmdp over 6 years ago
- 1 comment
#19 - HFCurationRequest PopulationID required
Issue -
State: closed - Opened by hpeberhard over 6 years ago
- 3 comments
#18 - Error 500 when retrieving non-existing detail data
Issue -
State: closed - Opened by fscheel over 6 years ago
#17 - Submitting new data with an existing cohort ID ignores the data
Issue -
State: closed - Opened by fscheel over 6 years ago
#15 - Missing input validation
Issue -
State: open - Opened by fscheel almost 7 years ago
- 4 comments
#14 - Missing Access Control
Issue -
State: open - Opened by fscheel almost 7 years ago
- 2 comments
#13 - Use a relational persistance layer and other things
Pull Request -
State: closed - Opened by fscheel about 7 years ago
#11 - Include SubmitterID in response /{submissionID}/Haplotypes
Issue -
State: open - Opened by Rozemuller about 7 years ago
- 1 comment
Labels: swagger-spec
#4 - Working version
Pull Request -
State: closed - Opened by mhalagan over 7 years ago