nlpsandbox/nlpsandbox-client issues and pull requests

#217 - Redirect Issues in cli calls

Issue - State: open - Opened by jakevc almost 2 years ago - 4 comments
Labels: Bug

#216 - fix example calls

Pull Request - State: open - Opened by jakevc almost 2 years ago

#215 - add some notebook examples

Pull Request - State: open - Opened by yy6linda over 2 years ago - 1 comment

#213 - add evaluation function for python client

Pull Request - State: closed - Opened by yy6linda almost 3 years ago

#210 - Update to 1.2.0

Pull Request - State: open - Opened by github-actions[bot] almost 3 years ago

#202 - Update login function

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#201 - Add in retry logic

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#200 - Increase number of request retries when evaluting a tool

Issue - State: closed - Opened by tschaffter over 3 years ago - 4 comments
Labels: Locked

#198 - Support scoring for schemas 1.2.0

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#197 - Check valid url

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#196 - Fix `push_dataset.py` example to support schemas v1.2.0

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#195 - Example not updated for 1.2.0 Data node

Issue - State: closed - Opened by gkowalski over 3 years ago - 3 comments
Labels: Bug, Priority: Medium, Locked

#194 - Unable to get list of datasets

Issue - State: closed - Opened by tschaffter over 3 years ago - 8 comments
Labels: Bug, Priority: Medium, Locked

#193 - The client does not throw an error when listing dataset from invalid host/path

Issue - State: closed - Opened by tschaffter over 3 years ago - 2 comments
Labels: Bug, Priority: High, Locked

#192 - Update to 1.2.0

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#191 - Bump version

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#190 - Release 4.0 client

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment
Labels: Enhancement, Locked

#189 - Update to 1.2.0

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#188 - Update to 1.1.2

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#187 - Push v3.1 of client

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment
Labels: Enhancement, Locked

#186 - Remove mention of date annotator stub

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#185 - Change name of workflow Update Date Annotator stub

Issue - State: closed - Opened by tschaffter over 3 years ago - 1 comment
Labels: Priority: Low, Locked

#184 - Add support for Id and Contact annotation scoring

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#183 - Bump pytest-randomly from 1.2.3 to 3.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, python

#182 - Bump pandas from 1.0.1 to 1.2.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, python

#181 - Bump synapseclient from 2.3.0 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, python

#180 - Update pytest requirement from ~=4.6.7 to ~=6.2.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, python

#179 - Bump actions/upload-artifact from 1 to 2.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, github_actions

#178 - Bump actions/setup-node from 1 to 2.1.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, github_actions

#177 - Bump python from 3.8.6-slim-buster to 3.9.5-slim-buster

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, docker

#176 - Set default branch to main

Issue - State: closed - Opened by tschaffter over 3 years ago - 6 comments
Labels: Enhancement, Priority: Medium, Locked

#175 - Group api/apis and model/models

Pull Request - State: closed - Opened by tschaffter over 3 years ago - 1 comment

#174 - Update nlpsandboxsdk to nlpsandbox

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#173 - Update sdk package name

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#172 - Fix tool name caused by aggressive search and replace

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#171 - Fix incorrect tool names

Issue - State: closed - Opened by tschaffter over 3 years ago - 1 comment
Labels: Bug, Priority: Critical, Locked

#170 - Bump version

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#169 - Update to 1.1.2

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#168 - Replace the term SDK?

Issue - State: closed - Opened by tschaffter over 3 years ago - 4 comments
Labels: Enhancement, Locked

#167 - Add id, contact, covid symptom annotations to example.json

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#166 - Update to 1.1.2

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#165 - Remove unnecessary files in auto generation in gh-action

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#164 - Update to 1.1.2

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment

#163 - Push v3 of client

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments
Labels: Enhancement, Locked

#162 - Hotfix

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#161 - Create merged NLP sandbox sdk client

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments

#160 - Update `example-patient-bundles.json` to include other annotators

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 3 comments
Labels: Priority: High, Locked

#159 - Update to support schemas 1.1.2

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment
Labels: Priority: High, Locked

#158 - Bump version

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#157 - Update annotator client

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments

#156 - Add scoring code (evaluation) support for id and contact annotators

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 6 comments
Labels: Priority: High, Locked

#155 - Update annotator SDK client to match schemas 1.1.1

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments

#154 - Update datanode SDK client to match version 1.1.1 schemas

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#153 - Unclear How to Combine Annotator Schemas

Issue - State: closed - Opened by boyleconnor over 3 years ago - 3 comments
Labels: Bug, Locked

#152 - Update to support schema version 1.1

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#151 - Add ID and Contact to nlpsandboxclient

Issue - State: closed - Opened by boyleconnor over 3 years ago - 1 comment
Labels: Enhancement, Locked

#150 - Release 1.0.1

Pull Request - State: closed - Opened by tschaffter over 3 years ago - 1 comment

#149 - Loading data into data node fails with example script

Issue - State: closed - Opened by gkowalski over 3 years ago - 9 comments
Labels: Bug, Locked

#148 - Finish adding rest of unit tests

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#147 - Update README.md

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#146 - Update docs

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#145 - Add tests

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments

#144 - Update annotator to v1.0.2

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#143 - Update datanode schema to v1.0.2

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#142 - Add coverage support

Pull Request - State: closed - Opened by tschaffter over 3 years ago - 1 comment

#141 - Release 1.0.0

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#140 - Write tests for the nlpsandboxclient

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 4 comments
Labels: Enhancement, Locked

#139 - Register to coveralls.io

Issue - State: closed - Opened by tschaffter over 3 years ago - 1 comment
Labels: Enhancement, Locked

#138 - Standardize tool type

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments

#137 - Test client for Python 3.9

Pull Request - State: closed - Opened by tschaffter over 3 years ago - 2 comments

#136 - Update push_dataset.py to delete dataset first

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#135 - Get rid of get_or_create_resource in example script

Issue - State: closed - Opened by tschaffter over 3 years ago - 3 comments
Labels: Enhancement, Priority: Low, Locked

#134 - Document how to set up SYNAPSE_API_KEY, SYNAPSE_API_KEY

Issue - State: closed - Opened by gkowalski over 3 years ago - 3 comments
Labels: Bug, Locked

#133 - Fix hadolint cp issue

Pull Request - State: closed - Opened by tschaffter over 3 years ago - 1 comment

#131 - Change "date", "person", and "address" parameters

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 11 comments
Labels: Enhancement, Locked

#130 - Pass in clinical note to annotate_note

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#128 - Rename CLI modules

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 2 comments

#127 - Create "annotator" and "datanode" cli modules

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment
Labels: Locked

#126 - Fix CI/CD workflow that builds and pushes to Dockerhub

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 6 comments
Labels: Locked

#125 - Add interim solution to log into synapse

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#124 - Release 0.4.1

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#122 - Update readme

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#121 - Add confidence values

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#120 - Automatically update client when new API release is available

Issue - State: closed - Opened by tschaffter over 3 years ago - 3 comments
Labels: Priority: Low, Locked

#119 - Change format of `annotate_note`

Issue - State: closed - Opened by boyleconnor over 3 years ago - 3 comments
Labels: Locked

#117 - Update client version and other improvements

Pull Request - State: closed - Opened by tschaffter over 3 years ago - 3 comments

#116 - Upgrade README

Issue - State: closed - Opened by tschaffter over 3 years ago - 3 comments
Labels: Locked

#115 - Update annotator to 1.0.1

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#114 - Update data node with API version 1.0.1

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#113 - Review example-patient-bundles.json

Issue - State: closed - Opened by thomasyu888 over 3 years ago - 7 comments
Labels: Priority: High, Locked

#112 - Add functions to create and delete dataset

Pull Request - State: closed - Opened by thomasyu888 over 3 years ago - 1 comment

#111 - update evaluation.py

Pull Request - State: closed - Opened by yy6linda over 3 years ago - 2 comments

#107 - Tool object requires License object

Issue - State: closed - Opened by thomasyu888 almost 4 years ago - 4 comments
Labels: Locked

#100 - Update datanode client based on schema changes

Pull Request - State: closed - Opened by thomasyu888 almost 4 years ago - 1 comment

#97 - Update client

Pull Request - State: closed - Opened by thomasyu888 almost 4 years ago - 1 comment

#94 - Add listing of datasets

Pull Request - State: closed - Opened by thomasyu888 almost 4 years ago - 1 comment

#88 - Add cli create dataset

Issue - State: closed - Opened by thomasyu888 almost 4 years ago - 3 comments
Labels: Locked

#34 - Add login(username, api_key)

Issue - State: closed - Opened by tschaffter about 4 years ago - 3 comments
Labels: Priority: Low, Locked

#32 - Describe how provide credentials to docker container (#18)

Pull Request - State: closed - Opened by tschaffter about 4 years ago - 2 comments
Labels: documentation, Priority: Low

#18 - Document how the user can pass Synapse credential to the Docker image

Issue - State: closed - Opened by tschaffter about 4 years ago - 5 comments
Labels: Locked

GitHub / nlpsandbox/nlpsandbox-client issues and pull requests