Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nlmixr2/nlmixr2est issues and pull requests

#370 - Only keep $parHistData and calc $parHist and $parHistStacked

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#369 - nlmixr2::nlmixr2 for SAEM - implement live traceplot (as done for Monolix)

Issue - State: open - Opened by iamstein over 1 year ago - 2 comments

#368 - Bring back `$parHistData`

Issue - State: closed - Opened by mattfidler over 1 year ago

#367 - Fix 366

Pull Request - State: closed - Opened by billdenney over 1 year ago - 1 comment

#366 - `$parFixed` shows incorrect BSV

Issue - State: closed - Opened by billdenney over 1 year ago - 6 comments

#365 - Zero gradient reset issue

Issue - State: open - Opened by mattfidler over 1 year ago

#364 - Return fit without table if table step fails

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#363 - return fit without table when table step fails

Issue - State: closed - Opened by mattfidler over 1 year ago

#362 - Sticky theta reset

Issue - State: open - Opened by mattfidler over 1 year ago

#361 - R crash with saem estimation and window size change

Issue - State: closed - Opened by billdenney over 1 year ago - 2 comments

#360 - Fix #359

Pull Request - State: closed - Opened by billdenney over 1 year ago

#359 - eta ~ 0 with correlated etas gives missing value error during printing

Issue - State: closed - Opened by billdenney over 1 year ago - 2 comments

#357 - Add different method of fixing parameters in saem

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#356 - Provide different fixing mechanism for `saem`

Issue - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#354 - Add mu2 processing

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#353 - Add scaling for `saem`

Issue - State: open - Opened by mattfidler over 1 year ago

#352 - Aug pred fix

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#351 - Adds documentation for the nlmixr2 object

Pull Request - State: closed - Opened by john-harrold over 1 year ago

#350 - The warning now is shown below

Issue - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#349 - Warn on time-varying covariate changes

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#348 - Problem with SAEM covariate modeling

Issue - State: closed - Opened by roninsightrx over 1 year ago - 24 comments

#346 - Simplify numbers in `$parFixed`

Issue - State: open - Opened by billdenney over 1 year ago - 3 comments

#344 - Suggestion: Deprecate `nlmixr2NlmeControl()`

Issue - State: closed - Opened by billdenney over 1 year ago - 2 comments

#343 - saem estimation not occurring in parallel

Issue - State: closed - Opened by billdenney over 1 year ago - 9 comments

#342 - vpcSim works with etas set to 0

Pull Request - State: closed - Opened by billdenney over 1 year ago - 6 comments

#341 - `vpcSim()` requires that etas set to zero must be in the dataset

Issue - State: closed - Opened by billdenney over 1 year ago - 3 comments

#340 - Make addCwres() error clearer for model with no etas

Pull Request - State: closed - Opened by billdenney over 1 year ago - 1 comment

#338 - Add mu ref fix

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#337 - Improved digest method

Issue - State: closed - Opened by billdenney over 1 year ago - 7 comments

#336 - 335 for $datamerge family prefer fit object instead of original data

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#333 - Add simulation method

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#332 - Add simulation method, ie `est="simulation"`, "

Issue - State: closed - Opened by snailittle over 1 year ago - 4 comments

#331 - Documentation Request: How can I use alternate distributions?

Issue - State: closed - Opened by billdenney over 1 year ago - 2 comments

#330 - ID isn't really needed when there is no etas for models.

Issue - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#329 - Rebuild documentation

Pull Request - State: closed - Opened by billdenney over 1 year ago

#326 - Allow for babelmixr2::pkncaControl() not to set genRxControl

Pull Request - State: closed - Opened by billdenney over 1 year ago - 1 comment

#325 - Make package installation consistent; fix typos; use label()

Pull Request - State: closed - Opened by billdenney over 1 year ago

#324 - Speed up some testing by minimizing the fit iterations

Pull Request - State: closed - Opened by billdenney over 1 year ago

#323 - 311 condition numbers

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#322 - 316 wrong initial values in nlmixr2 object

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#321 - 318 fix bound

Pull Request - State: closed - Opened by billdenney over 1 year ago

#320 - Only use absolute value of the difference

Pull Request - State: closed - Opened by mattfidler over 1 year ago - 8 comments

#319 - drop stan headers and eigen

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#317 - Drop StanHeaders/RcppEigen

Issue - State: closed - Opened by mattfidler over 1 year ago

#316 - Wrong initial values in nlmixr2 object

Issue - State: closed - Opened by PhilP86 over 1 year ago - 2 comments

#314 - Be a bit more robust with `saem` inverses?

Issue - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#313 - Update compilation/linker flags for StanHeaders 2.26 compatibility

Pull Request - State: closed - Opened by andrjohns over 1 year ago - 5 comments

#311 - Condition Numbers

Issue - State: closed - Opened by mattfidler over 1 year ago

#310 - Fallback to old method

Pull Request - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#309 - Fix failing `nlmixr2est`

Issue - State: closed - Opened by mattfidler over 1 year ago

#308 - Make some focei methods for simulation that are closer to est model

Pull Request - State: closed - Opened by mattfidler over 1 year ago - 1 comment

#307 - `vpcSim()` converts `keep` columns to numeric

Issue - State: closed - Opened by billdenney over 1 year ago - 1 comment
Labels: duplicate

#306 - `simVpc` needs to more closely match the estimated model

Issue - State: closed - Opened by mattfidler over 1 year ago - 2 comments

#305 - Get the confidence intervals from the defined uncertainty method

Issue - State: closed - Opened by billdenney over 1 year ago - 2 comments

#304 - 302 mu reference definition isnt correct for non mu referenced model

Pull Request - State: closed - Opened by mattfidler over 1 year ago

#303 - Feature Brainstorm: Documentation of Covariates?

Issue - State: open - Opened by billdenney over 1 year ago - 2 comments

#302 - Mu reference definition isn't correct for non-mu referenced model

Issue - State: closed - Opened by mattfidler almost 2 years ago - 1 comment

#301 - Inaccurate reporting of only NA values for a subject

Issue - State: closed - Opened by billdenney almost 2 years ago - 4 comments

#299 - Remove debugging statement

Pull Request - State: closed - Opened by billdenney almost 2 years ago

#298 - Should "here!!!" print during the covariance step?

Issue - State: closed - Opened by billdenney almost 2 years ago - 1 comment

#295 - How to track down "NAs introduced by coercion"

Issue - State: closed - Opened by billdenney almost 2 years ago - 4 comments

#293 - Speed up testing

Issue - State: closed - Opened by billdenney almost 2 years ago - 3 comments

#292 - Fix rxode2 #364

Pull Request - State: closed - Opened by billdenney almost 2 years ago - 8 comments

#290 - 289 issue in obtaining model estimates

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#289 - Issue in obtaining model estimates

Issue - State: closed - Opened by diabloyg almost 2 years ago - 4 comments

#288 - Test nonmu and add test case for merge (and unsuccesful merge)

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#287 - Another merge issue

Issue - State: closed - Opened by mattfidler almost 2 years ago

#286 - Test estimation of combined `linCmt()`, ODE models

Issue - State: open - Opened by billdenney almost 2 years ago - 8 comments

#285 - 284 include log likelihood per observation when adding cwres

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#284 - Include log-likelihood per observation when adding `cwres`

Issue - State: closed - Opened by mattfidler almost 2 years ago

#281 - Fuzzy bad, silver good

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#280 - Piping bioavailability with an nlmixr2fit object fails while rxUi objects work

Issue - State: closed - Opened by billdenney almost 2 years ago - 1 comment

#279 - Update ci

Pull Request - State: closed - Opened by billdenney almost 2 years ago

#278 - Start testing bill's example

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#277 - Add ARMA_64BIT_WORD

Pull Request - State: closed - Opened by mattfidler almost 2 years ago

#276 - `ARMA_64BIT_WORD`

Issue - State: closed - Opened by mattfidler almost 2 years ago

#275 - Update CI workflow to current versions

Pull Request - State: closed - Opened by billdenney almost 2 years ago - 5 comments

#273 - Re-allow ID to be something other than numeric for focei

Pull Request - State: closed - Opened by billdenney almost 2 years ago - 3 comments

#272 - Error of "no rows in event table or input data" in model that previously worked

Issue - State: closed - Opened by billdenney almost 2 years ago - 3 comments

#271 - Does `DV` have to be numeric?

Issue - State: open - Opened by billdenney almost 2 years ago - 2 comments

#270 - Fuzzy text in print header for FOCEi

Issue - State: closed - Opened by billdenney almost 2 years ago - 5 comments