Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipy/nitransforms issues and pull requests
#187 - FIX: Postpone coordinate mapping on linear array transforms
Pull Request -
State: closed - Opened by oesteban 8 months ago
- 2 comments
#186 - FIX: Inefficient iterative reloading of reference and moving images
Pull Request -
State: closed - Opened by oesteban 8 months ago
- 1 comment
#185 - Mapping of displacement fields
Issue -
State: open - Opened by jbanusco 8 months ago
- 3 comments
#184 - Notes on incorporating voxel shift maps and per-volume transforms
Issue -
State: open - Opened by effigies 9 months ago
#183 - Is nitransforms now a full replacement for c3d_affine_tool?
Issue -
State: closed - Opened by effigies 11 months ago
- 2 comments
#182 - output displacement fields
Pull Request -
State: open - Opened by bpinsard 11 months ago
#181 - MNT: Drop Python 3.7 support, test through 3.11
Pull Request -
State: closed - Opened by effigies 12 months ago
- 3 comments
#180 - Fix: numpy deprecation errors after 1.22
Pull Request -
State: closed - Opened by oesteban 12 months ago
#179 - ENH: Load ITK's ``.mat`` files with ``Affine``'s loaders
Pull Request -
State: closed - Opened by oesteban 12 months ago
- 1 comment
#178 - FIX: Ensure datatype of generated CIFTI2 file in ``TransformBase`` unit test
Pull Request -
State: closed - Opened by oesteban about 1 year ago
- 1 comment
#177 - Tests failing (probably new version of nibabel checking on GIFTI data types)
Issue -
State: closed - Opened by oesteban about 1 year ago
#176 - FIX: Set x-forms on resampled images
Pull Request -
State: closed - Opened by oesteban about 1 year ago
- 1 comment
#175 - Resampled images do not properly set x-forms
Issue -
State: closed - Opened by oesteban about 1 year ago
#174 - ENH: Read ITK's composite transforms with only affines
Pull Request -
State: closed - Opened by oesteban over 1 year ago
- 4 comments
#173 - Memory issues when resampling large 4D files
Issue -
State: closed - Opened by oesteban over 1 year ago
- 16 comments
#172 - MAINT: Rotate CircleCI secrets and setup up org-level context
Pull Request -
State: closed - Opened by oesteban over 1 year ago
- 1 comment
#171 - Incorrect dimension order with HDF5 warp field transforms
Issue -
State: open - Opened by feilong over 1 year ago
#170 - ENH: Collapse linear and nonlinear transforms chains
Pull Request -
State: open - Opened by oesteban almost 2 years ago
- 2 comments
#169 - Ensure composition should be implemented with ``__matmul__`` and not ``__rmatmul__``
Issue -
State: open - Opened by oesteban almost 2 years ago
#168 - ENH: "Densify" voxel-wise nonlinear mappings with interpolation
Pull Request -
State: closed - Opened by oesteban almost 2 years ago
- 1 comment
#167 - Double-check ITK's `.h5` composites
Issue -
State: open - Opened by oesteban almost 2 years ago
#166 - ENH: Extend the nonlinear transforms API
Pull Request -
State: closed - Opened by oesteban almost 2 years ago
- 9 comments
#165 - ENH: API change in ``TransformChain`` - new composition convention
Pull Request -
State: closed - Opened by oesteban almost 2 years ago
- 6 comments
#164 - MAINT: Loosen dependencies
Pull Request -
State: closed - Opened by mgxd about 2 years ago
- 10 comments
#163 - MAINT: Conclude migration ``poldracklab`` -> ``nipy``
Pull Request -
State: closed - Opened by oesteban about 2 years ago
- 1 comment
#162 - FIX: Orientation of displacements field and header when reading ITK's h5
Pull Request -
State: closed - Opened by oesteban over 2 years ago
#161 - FIX: Wrong datatype used for offset when reading ITK's h5 fields.
Pull Request -
State: closed - Opened by oesteban over 2 years ago
#160 - ENH: Guess open linear transform formats
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 7 comments
#159 - Add myself as a contributor
Pull Request -
State: closed - Opened by HippocampusGirl over 2 years ago
- 1 comment
#158 - Obliquity test does not capture rotations around only one axis
Issue -
State: open - Opened by oesteban over 2 years ago
Labels: bug
#157 - Reading/writing AFNI displacement fields with oblique moving/reference
Issue -
State: open - Opened by oesteban over 2 years ago
#156 - Multi-level B-Spline displacements fields
Issue -
State: open - Opened by oesteban over 2 years ago
#155 - Mapping off-grid points with the displacements field transform
Issue -
State: closed - Opened by oesteban over 2 years ago
Labels: bug
#154 - B-Spline mapping of individual points is broken
Issue -
State: open - Opened by oesteban over 2 years ago
Labels: bug
#153 - FIX: Ensure input dtype is kept after resampling
Pull Request -
State: closed - Opened by oesteban over 2 years ago
#152 - ``transform.apply()`` does not keep the dtype of the input image
Issue -
State: closed - Opened by oesteban over 2 years ago
Labels: bug
#151 - Fix #149 replace `_read_mat` with `scipy.io.loadmat`
Pull Request -
State: closed - Opened by HippocampusGirl over 2 years ago
- 3 comments
#150 - Implement AFNI's "deoblique" operation
Issue -
State: closed - Opened by oesteban over 2 years ago
#149 - `DeprecationWarning` with scipy 1.8.0
Issue -
State: closed - Opened by HippocampusGirl over 2 years ago
- 4 comments
#148 - MAINT: Fix path to test summaries in CircleCI
Pull Request -
State: closed - Opened by oesteban over 2 years ago
#147 - Current FreeSurfer LTA implementation conflates head-motion series with transform array
Issue -
State: open - Opened by oesteban over 2 years ago
#146 - FIX: Add FSL-LTA-FSL regression tests
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 1 comment
#145 - FIX: Refactor of LTA implementation
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 2 comments
#144 - FIX: Increase FSL serialization precision
Pull Request -
State: closed - Opened by effigies over 2 years ago
#143 - FIX: Load arrays of linear transforms from AFNI files
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 1 comment
#142 - FIX: Load arrays of linear transforms from FSL files
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 2 comments
#141 - FIX: Double-check dtypes within tests and increase RMSE tolerance
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 1 comment
#140 - MAINT: Move testdata on to gin.g-node.org & datalad
Pull Request -
State: closed - Opened by oesteban over 2 years ago
#139 - MAINT: scipy-1.8, numpy-1.22 require python 3.8
Pull Request -
State: closed - Opened by oesteban over 2 years ago
#138 - ENH: Base implementation of B-Spline transforms
Pull Request -
State: closed - Opened by oesteban over 2 years ago
- 3 comments
#137 - Problem applying h5-files from fmriprep outputs for reproduction of normalization
Issue -
State: open - Opened by m-petersen over 2 years ago
- 5 comments
Labels: bug
#136 - DOC: Add zenodo metadata record
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
#135 - FIX: Final edits to JOSS submission
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 1 comment
#134 - ENH: Add more comprehensive comments to notebook
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
#133 - DOC: Better document the ipython notebooks
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 2 comments
#132 - FIX: Add mention to potential alternatives in JOSS submission
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 1 comment
#131 - DOC: Transfer CoC from NiBabel
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 1 comment
#130 - DOC: Add contributing page to RTD
Pull Request -
State: closed - Opened by mgxd almost 3 years ago
- 1 comment
#129 - FIX: Misinterpretation of voxel ordering in LTAs
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 4 comments
#128 - DOC: Clarify integration plans with *NiBabel* in the README
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 1 comment
#127 - DOC: Add CONTRIBUTING.md file pointing at NiBabel
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 2 comments
#126 - DOC: Add example notebooks to sphinx documentation
Pull Request -
State: closed - Opened by mgxd almost 3 years ago
- 2 comments
#125 - BUG: Errors reading LTAs, especially interpreting VOX2VOX type
Issue -
State: closed - Opened by oesteban almost 3 years ago
- 1 comment
Labels: bug
#124 - FIX: Invalid DOI
Pull Request -
State: closed - Opened by mgxd almost 3 years ago
- 1 comment
#123 - JOSS review - software
Issue -
State: closed - Opened by robbisg almost 3 years ago
- 3 comments
#122 - DOC: Add an *Installation* section
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 3 comments
#121 - FIX: Suggested edits to the JOSS submission
Pull Request -
State: closed - Opened by oesteban almost 3 years ago
- 4 comments
#120 - DOC: Display API per module
Pull Request -
State: closed - Opened by mgxd almost 3 years ago
#119 - JOSS review - software paper sections
Issue -
State: closed - Opened by PeerHerholz almost 3 years ago
#118 - JOSS review - current state & integration to NiBabel
Issue -
State: closed - Opened by PeerHerholz almost 3 years ago
- 9 comments
#117 - FIX: Implement AFNI's deoblique operations
Pull Request -
State: closed - Opened by oesteban about 3 years ago
- 9 comments
#116 - DOC: Update sphinx to latest major (4.0)
Pull Request -
State: closed - Opened by oesteban about 3 years ago
#115 - Help with installation and tutorial
Issue -
State: closed - Opened by cauzzo-s5 about 3 years ago
- 2 comments
Labels: documentation, question
#114 - DOC: Initial setup for sphinx-build
Pull Request -
State: closed - Opened by oesteban about 3 years ago
- 1 comment
#113 - Skip duplicate actions
Issue -
State: closed - Opened by oesteban about 3 years ago
- 1 comment
Labels: help wanted
#112 - MAINT: Move from TravisCI to GHA
Pull Request -
State: closed - Opened by oesteban about 3 years ago
- 3 comments
#111 - Design and implementation of an X5 internal representation of transforms
Issue -
State: open - Opened by oesteban about 3 years ago
#110 - Integration into NiBabel
Issue -
State: open - Opened by oesteban about 3 years ago
#109 - Identify missing formats and finalize automagic loading
Issue -
State: closed - Opened by oesteban about 3 years ago
#108 - Resampling of mixed volume+surface data
Issue -
State: open - Opened by oesteban about 3 years ago
#107 - Resampling of surfaces
Issue -
State: closed - Opened by oesteban about 3 years ago
#106 - Bring B-Spline interpolation code from SDCFlows
Issue -
State: closed - Opened by oesteban about 3 years ago
#105 - Slice-timing correction representation
Issue -
State: open - Opened by effigies about 3 years ago
- 4 comments
#104 - MAINT: Revise tests and Docker image dependencies
Pull Request -
State: closed - Opened by oesteban about 3 years ago
#103 - CI is broken
Issue -
State: closed - Opened by oesteban about 3 years ago
Labels: bug
#102 - FIX: Accept double precision when reading ANTs' ``.mat`` affines
Pull Request -
State: closed - Opened by oesteban over 3 years ago
- 4 comments
#101 - Open Microscopy Environment considering a generic nonlinear transform format
Issue -
State: open - Opened by effigies over 3 years ago
#100 - Integrate code from regtricks?
Issue -
State: closed - Opened by tomfrankkirk almost 4 years ago
- 7 comments
#99 - DRY: fslpy has some transform implementations
Issue -
State: closed - Opened by effigies almost 4 years ago
- 3 comments
#98 - docs: add split steps for figure 1, revise png versions [skip ci]
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#95 - FIX: ITK .h5 transforms read in reverse order
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#94 - Transforming streamlines
Issue -
State: open - Opened by arokem about 4 years ago
- 2 comments
#89 - Extend the method to "collapse" transforms in a ``TransformChain`` to the nonlinear case
Issue -
State: open - Opened by oesteban over 4 years ago
#87 - Guess ITK-type with extension on load: ``.tfm``, ``.mat``, ``.h5``
Issue -
State: closed - Opened by oesteban over 4 years ago
- 1 comment
#86 - Guess transform type with extension on load: ``.lta``
Issue -
State: closed - Opened by oesteban over 4 years ago
Labels: enhancement
#81 - Ordering of tranforms in TransformChain
Issue -
State: closed - Opened by oesteban over 4 years ago
Labels: TBD
#76 - Mappings of nonlinear transforms
Issue -
State: open - Opened by oesteban over 4 years ago
#73 - Add tests for FSL-LTA-FSL conversions
Issue -
State: closed - Opened by oesteban over 4 years ago
#63 - FIX: Amend some error types
Pull Request -
State: closed - Opened by oesteban over 4 years ago
- 3 comments
#62 - Consider renaming `LinearTransformArray` to `FSLinearTransformArray`
Issue -
State: closed - Opened by mgxd over 4 years ago
- 1 comment