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GitHub / nipy/nipype issues and pull requests

#3725 - Chore(deps): Bump astral-sh/setup-uv from 5 to 6

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, github_actions

#3724 - Slicer _cmd revision and quotes around %s

Pull Request - State: open - Opened by andrewcyung 3 months ago

#3723 - [ENH]name conflicts input for dcm2niix interface

Pull Request - State: open - Opened by mauriliogenovese 4 months ago - 1 comment

#3722 - [ENH]bedpostx and probtrackx gpu and multithread support

Pull Request - State: open - Opened by mauriliogenovese 4 months ago - 1 comment

#3721 - [FIX]eddy command and multithreading

Pull Request - State: open - Opened by mauriliogenovese 4 months ago - 2 comments

#3720 - REL: 1.10.0

Pull Request - State: closed - Opened by effigies 4 months ago - 1 comment

#3719 - chore: Remove direct URL for traits on py313

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment

#3718 - reimplementation of gpu_count

Pull Request - State: closed - Opened by mauriliogenovese 5 months ago - 3 comments

#3716 - fix: Allow nipype.sphinx.ext.apidoc Config to work with Sphinx 8.2.1+

Pull Request - State: closed - Opened by effigies 5 months ago - 2 comments

#3714 - [Question]: Usage of Graph Algorithms and Any Slowdowns?

Issue - State: closed - Opened by nv-rliu 5 months ago - 3 comments

#3713 - [FIX] Set length to 1 when np.squeeze returns a 0D array

Pull Request - State: closed - Opened by man-shu 6 months ago - 7 comments

#3712 - [BUG] Merging rois outputs from bedpostx_parallel fails

Issue - State: closed - Opened by man-shu 6 months ago

#3711 - Performing an exact antsRegistrationSyN.sh command

Issue - State: open - Opened by lukevano 6 months ago

#3710 - Setting up PATH for nipype.interfaces.ants

Issue - State: open - Opened by lukevano 6 months ago - 2 comments

#3709 - fix: Resolve crashes when running workflows with updatehash=True

Pull Request - State: closed - Opened by mauriliogenovese 6 months ago - 2 comments

#3708 - Update to .wci.yml

Pull Request - State: closed - Opened by rafaelfsilva 6 months ago

#3707 - Chore(deps): Bump astral-sh/setup-uv from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependency

#3706 - No pe volumes generated by FSL Estimate

Issue - State: open - Opened by adamjbarnas 7 months ago

#3705 - REL: 1.9.2

Pull Request - State: closed - Opened by effigies 7 months ago - 3 comments

#3704 - FIX: Missed np.savetxt bstring

Pull Request - State: closed - Opened by mgxd 7 months ago - 2 comments

#3703 - Bump codecov/codecov-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependency

#3702 - Bump astral-sh/setup-uv from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependency

#3701 - REL: 1.9.1

Pull Request - State: closed - Opened by effigies 8 months ago - 1 comment

#3700 - Normalize runtime threads in gantt chart

Issue - State: open - Opened by effigies 8 months ago

#3697 - [FIX] `ts_Z_corr` → `ts_wb_Z`

Pull Request - State: closed - Opened by shnizzedy 9 months ago - 1 comment

#3696 - `ts_Z_corr` not defined

Issue - State: closed - Opened by shnizzedy 9 months ago - 3 comments

#3695 - ENH: Remove unused and recently unsupported antsRegistration flag

Pull Request - State: closed - Opened by hjmjohnson 9 months ago - 1 comment
Labels: 1 - Ready

#3694 - REL: 1.9.0

Pull Request - State: closed - Opened by effigies 9 months ago - 2 comments

#3692 - RF: Replace deprecated pkgutil.find_loader with importlib.util.find_spec

Pull Request - State: closed - Opened by effigies 10 months ago - 1 comment

#3691 - DOC: Patch doc/conf.py to work with latest ReadTheDocs

Pull Request - State: closed - Opened by effigies 10 months ago - 1 comment

#3690 - STY: Enforce ruff rules

Pull Request - State: open - Opened by DimitriPapadopoulos 10 months ago - 2 comments

#3689 - STY: Apply ruff/pycodestyle rules (E)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3688 - STY: Apply ruff rules (RUF) again

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3687 - STY: Apply ruff/Perflint rules (PERF) again

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3686 - STY: Apply ruff/flake8-comprehensions preview rules (C4)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3685 - MNT: Drop traits upper bound

Pull Request - State: closed - Opened by effigies 10 months ago - 1 comment

#3684 - MCFLIRT naming error with FSL 6.0.7.13

Issue - State: open - Opened by b1060t 10 months ago - 2 comments
Labels: bug

#3683 - Fix nipy#3653 and nipy#3654 in the CAT12 Interface

Pull Request - State: open - Opened by JailanOweda 10 months ago - 1 comment

#3682 - MNT: Apply assorted repo-review rules

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3681 - STY: Apply ruff/Pyflakes rules (F)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3680 - STY: Apply ruff/flake8-comprehensions rules (C4)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3679 - STY: Apply ruff/flake8-implicit-str-concat rules (ISC)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3678 - STY: Apply ruff/flake8-pie rules (PIE)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3677 - STY: Apply ruff/flake8-raise rules (RSE)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3676 - STY: Apply ruff/flake8-simplify rules (SIM)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3675 - STY: Apply ruff/flynt rules (FLY)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3674 - STY: Apply ruff/Perflint rules (PERF)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3673 - STY: Apply ruff rules (RUF)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3672 - STY: Codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3671 - STY: Apply ruff/flake8-bugbear rules (B)

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#3670 - Use regular ".now" instead of ".utcnow" with UTC zone

Pull Request - State: closed - Opened by yarikoptic 11 months ago - 3 comments

#3669 - nipype.interfaces.spm.model use_vox_fdr_correction attribute error

Issue - State: open - Opened by Claar727 11 months ago - 2 comments
Labels: question

#3668 - ENH: tcksift2

Pull Request - State: open - Opened by shachafy 11 months ago - 1 comment

#3667 - freesurfer reconall outputs missing

Issue - State: open - Opened by JailanOweda 11 months ago - 1 comment

#3666 - [ENH] Interface for tcksift2

Issue - State: open - Opened by GalKepler 12 months ago

#3665 - [ENH] Interface for MRTrix's tcksift

Issue - State: open - Opened by GalKepler 12 months ago

#3664 - Must Obtain Valid Freesurfer License

Issue - State: open - Opened by JBarsotti 12 months ago - 1 comment

#3663 - Changed inheritence of TensorMetricsInputSpec

Pull Request - State: closed - Opened by GalKepler 12 months ago - 1 comment

#3661 - Please consider making nipype compatible with traits >= 6.4

Issue - State: closed - Opened by penguinpee about 1 year ago - 2 comments

#3659 - Replace deprecated imghdr

Pull Request - State: closed - Opened by penguinpee about 1 year ago - 1 comment

#3658 - [ENH] Added available inputs for MRTrix3's 5ttgen

Pull Request - State: closed - Opened by GalKepler about 1 year ago - 2 comments

#3657 - [ENH] Enhance implementation of 5ttgen

Issue - State: closed - Opened by GalKepler about 1 year ago

#3656 - DWIPreproc references non-existing inputs

Issue - State: closed - Opened by GalKepler about 1 year ago - 2 comments

#3655 - FIX: evaluate_connect_function should raise error on un-nested imports

Pull Request - State: closed - Opened by scott-huberty about 1 year ago - 3 comments

#3652 - ENH: FILMGLS gifti output support in surface mode

Pull Request - State: closed - Opened by bogpetre about 1 year ago - 1 comment

#3651 - RF: Simplify high-pass filtering in algorithms.confounds

Pull Request - State: open - Opened by effigies about 1 year ago - 2 comments

#3650 - [FIX] mat 7.3 support for SPM.mat files

Pull Request - State: closed - Opened by adamnarai about 1 year ago - 1 comment

#3649 - AttributeError: 'PythonQtStdOutRedirect' object has no attribute 'fileno'

Issue - State: open - Opened by sarafv about 1 year ago - 1 comment

#3648 - STY: Apply ruff/refurb rules

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago - 1 comment

#3647 - STY: Apply ruff/pyupgrade rules

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago - 1 comment

#3646 - [ENH] String Interpolation

Issue - State: open - Opened by zachlindsey over 1 year ago

#3645 - Set number of threads in MRTrix3's interfaces

Issue - State: open - Opened by oesteban over 1 year ago - 2 comments

#3643 - Prov dependency

Issue - State: open - Opened by TheChymera over 1 year ago - 2 comments

#3642 - support for gpu queue

Pull Request - State: closed - Opened by mauriliogenovese over 1 year ago - 3 comments

#3641 - [WIP] FIX - AFNI Zeropad sets out_file

Pull Request - State: open - Opened by zachlindsey over 1 year ago - 3 comments

#3640 - AFNI Zeropad out_file undefined

Issue - State: open - Opened by zachlindsey over 1 year ago - 1 comment

#3639 - REL: 1.8.7

Pull Request - State: closed - Opened by effigies over 1 year ago - 9 comments

#3638 - Test Python 3.12 support

Pull Request - State: closed - Opened by effigies over 1 year ago

#3637 - FIX: Parse commas in CSV fields

Pull Request - State: closed - Opened by zachlindsey over 1 year ago - 1 comment

#3636 - use csvreader for parsing csv files

Pull Request - State: closed - Opened by zachlindsey over 1 year ago

#3635 - CSVReader does not handle quoted fields or tsv files

Issue - State: closed - Opened by zachlindsey over 1 year ago - 1 comment

#3634 - ENH: add STC PVC to PETPVC interface

Pull Request - State: closed - Opened by mnoergaard over 1 year ago - 1 comment

#3632 - Bump the actions-infrastructure group with 3 updates

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependency

#3631 - Leftover Python 2 construct (cmp) is still used

Issue - State: closed - Opened by yarikoptic over 1 year ago - 3 comments

#3630 - ENH: added 'hsvs' option to 5ttgen + mrtransform fix

Pull Request - State: closed - Opened by teanijarv over 1 year ago - 1 comment

#3629 - DOC/FIX: Fix wrong name, should be al_ea

Pull Request - State: closed - Opened by stebo85 over 1 year ago - 1 comment

#3628 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependency

#3627 - Adjusted variable names for clarity and codespell false positives

Pull Request - State: closed - Opened by TheChymera over 1 year ago - 2 comments

#3626 - Tests on `=nipype-1.8.6` fail with

Issue - State: closed - Opened by TheChymera over 1 year ago - 3 comments