Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipy/nipype issues and pull requests
#3668 - ENH: tcksift2
Pull Request -
State: open - Opened by shachafy about 1 month ago
#3667 - freesurfer reconall outputs missing
Issue -
State: open - Opened by JailanOweda about 1 month ago
#3666 - [ENH] Interface for tcksift2
Issue -
State: open - Opened by GalKepler about 2 months ago
#3665 - [ENH] Interface for MRTrix's tcksift
Issue -
State: open - Opened by GalKepler about 2 months ago
#3664 - Must Obtain Valid Freesurfer License
Issue -
State: open - Opened by JBarsotti about 2 months ago
#3663 - Changed inheritence of TensorMetricsInputSpec
Pull Request -
State: open - Opened by GalKepler 2 months ago
- 1 comment
#3662 - [BUG] TensorToMetrics inputs specification doesn't inherit from Mrtrix3 Base
Issue -
State: open - Opened by GalKepler 2 months ago
#3661 - Please consider making nipype compatible with traits >= 6.4
Issue -
State: open - Opened by penguinpee 2 months ago
- 2 comments
#3660 - Broken link to "self-assessment" on Quickstart wiki page
Issue -
State: open - Opened by joey-scanga 2 months ago
#3659 - Replace deprecated imghdr
Pull Request -
State: open - Opened by penguinpee 2 months ago
#3658 - [ENH] Added available inputs for MRTrix3's 5ttgen
Pull Request -
State: open - Opened by GalKepler 2 months ago
- 2 comments
#3657 - [ENH] Enhance implementation of 5ttgen
Issue -
State: open - Opened by GalKepler 2 months ago
#3656 - DWIPreproc references non-existing inputs
Issue -
State: closed - Opened by GalKepler 3 months ago
- 2 comments
#3655 - FIX: evaluate_connect_function should raise error on un-nested imports
Pull Request -
State: open - Opened by scott-huberty 4 months ago
#3654 - nipype.interfaces.cat12.preprocess.CAT12Segment FileNotFoundError: No such file or directory '/[....]/catROIs_T1w.xml' for output 'label_rois' of a CAT12Segment interface
Issue -
State: open - Opened by JohannesWiesner 4 months ago
- 5 comments
#3653 - nipype.interfaces.cat12.preprocess.CAT12Segment does not accept compressed `.nii.gz` files
Issue -
State: open - Opened by JohannesWiesner 4 months ago
- 9 comments
#3652 - ENH: FILMGLS gifti output support in surface mode
Pull Request -
State: open - Opened by bogpetre 4 months ago
#3651 - RF: Simplify high-pass filtering in algorithms.confounds
Pull Request -
State: open - Opened by effigies 4 months ago
- 2 comments
#3650 - [FIX] mat 7.3 support for SPM.mat files
Pull Request -
State: open - Opened by adamnarai 4 months ago
- 1 comment
#3649 - AttributeError: 'PythonQtStdOutRedirect' object has no attribute 'fileno'
Issue -
State: open - Opened by sarafv 4 months ago
- 1 comment
#3648 - STY: Apply ruff/refurb rules
Pull Request -
State: closed - Opened by DimitriPapadopoulos 5 months ago
- 1 comment
#3647 - STY: Apply ruff/pyupgrade rules
Pull Request -
State: closed - Opened by DimitriPapadopoulos 5 months ago
- 1 comment
#3646 - [ENH] String Interpolation
Issue -
State: open - Opened by zachlindsey 6 months ago
#3645 - Set number of threads in MRTrix3's interfaces
Issue -
State: open - Opened by oesteban 6 months ago
- 2 comments
#3644 - Request: flag to glob.glob to search recursively for template in Selectfiles()
Issue -
State: open - Opened by luisa-sophia 6 months ago
#3643 - Prov dependency
Issue -
State: open - Opened by TheChymera 6 months ago
- 2 comments
#3642 - support for gpu queue
Pull Request -
State: open - Opened by mauriliogenovese 6 months ago
- 3 comments
#3641 - [WIP] FIX - AFNI Zeropad sets out_file
Pull Request -
State: open - Opened by zachlindsey 6 months ago
- 3 comments
#3640 - AFNI Zeropad out_file undefined
Issue -
State: open - Opened by zachlindsey 6 months ago
- 1 comment
#3639 - REL: 1.8.7
Pull Request -
State: open - Opened by effigies 6 months ago
- 9 comments
#3638 - Test Python 3.12 support
Pull Request -
State: closed - Opened by effigies 6 months ago
#3637 - FIX: Parse commas in CSV fields
Pull Request -
State: closed - Opened by zachlindsey 7 months ago
- 1 comment
#3636 - use csvreader for parsing csv files
Pull Request -
State: closed - Opened by zachlindsey 7 months ago
#3635 - CSVReader does not handle quoted fields or tsv files
Issue -
State: closed - Opened by zachlindsey 7 months ago
- 1 comment
#3634 - ENH: add STC PVC to PETPVC interface
Pull Request -
State: closed - Opened by mnoergaard 7 months ago
- 1 comment
#3633 - ENH: add STC partial volume correction to PETPVC interface
Issue -
State: closed - Opened by mnoergaard 7 months ago
#3632 - Bump the actions-infrastructure group with 3 updates
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
- 1 comment
Labels: dependency
#3631 - Leftover Python 2 construct (cmp) is still used
Issue -
State: closed - Opened by yarikoptic 7 months ago
- 3 comments
#3630 - ENH: added 'hsvs' option to 5ttgen + mrtransform fix
Pull Request -
State: closed - Opened by teanijarv 7 months ago
- 1 comment
#3629 - DOC/FIX: Fix wrong name, should be al_ea
Pull Request -
State: closed - Opened by stebo85 8 months ago
- 1 comment
#3628 - Bump codecov/codecov-action from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependency
#3627 - Adjusted variable names for clarity and codespell false positives
Pull Request -
State: closed - Opened by TheChymera 8 months ago
- 2 comments
#3626 - Tests on `=nipype-1.8.6` fail with
Issue -
State: closed - Opened by TheChymera 8 months ago
- 3 comments
#3625 - dcm2niix interface default output file orientation error
Issue -
State: open - Opened by WangzLiang 9 months ago
#3624 - Bump actions/download-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependency
#3623 - Bump actions/upload-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependency
#3622 - Nipype does not set all inputs of a Function Node if this node was used previously
Issue -
State: closed - Opened by sulantha2006 10 months ago
- 2 comments
#3621 - Denoising using clean_img function + SPM first level analysis. “Please check your data: There are no significant voxels.” error in model estimation node
Issue -
State: closed - Opened by stepantikhomirov 10 months ago
- 1 comment
#3620 - Bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 3 comments
Labels: dependency
#3619 - Request for Flexible Factorial Support in nipype.interfaces.spm
Issue -
State: open - Opened by XiaoJian923 10 months ago
#3618 - antsRegistration not working anymore with recent versions of ANTS
Issue -
State: closed - Opened by enzo-bonnot 10 months ago
- 3 comments
#3617 - [ENH] Add GenericLabel to ANTS ApplyTransforms.
Pull Request -
State: closed - Opened by tsalo 10 months ago
- 1 comment
#3616 - "TraitError: Each element of the 'in_files' trait of a SmoothInputSpec instance must be a pathlike object or string representing an existing file
Issue -
State: open - Opened by stepantikhomirov 10 months ago
- 2 comments
#3615 - Error in MRTrix3 MRTransform
Issue -
State: closed - Opened by manuegrx 10 months ago
- 8 comments
#3614 - Workflow run return status
Issue -
State: closed - Opened by sulantha2006 11 months ago
- 1 comment
#3613 - [ENH]: Add functions to mrtrix3 interface
Pull Request -
State: closed - Opened by lbutry 11 months ago
- 5 comments
#3612 - [ENH]: Adding maskfilter, mtnormalise, 5tt2gmwmi to mrtrix3
Issue -
State: closed - Opened by lbutry 11 months ago
#3611 - [FIX] MRTrix3 change inputs position for MRTransform
Pull Request -
State: closed - Opened by manuegrx 12 months ago
#3610 - [FIX] Deduplicate dcm2niix output
Pull Request -
State: closed - Opened by mauriliogenovese 12 months ago
- 3 comments
#3609 - [FIX] Add cropped files to dcm2niix output
Pull Request -
State: closed - Opened by mauriliogenovese 12 months ago
- 1 comment
#3608 - Add Workflow Community Initiative (WCI) descriptor
Pull Request -
State: open - Opened by u11kumar 12 months ago
- 2 comments
#3607 - Provide .wci.yml file for https://workflows.community initiative
Issue -
State: open - Opened by yarikoptic about 1 year ago
#3606 - DOC: Fix typos newly found by codespell
Pull Request -
State: closed - Opened by DimitriPapadopoulos about 1 year ago
- 1 comment
#3605 - Run tests whenever TMPDIR points to some folder with spaces in the name
Pull Request -
State: open - Opened by yarikoptic about 1 year ago
- 2 comments
#3604 - Doesn't quote paths in the invocation of dcm2niix - directory with a space makes execution fail
Issue -
State: open - Opened by yarikoptic about 1 year ago
- 2 comments
#3603 - Bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependency
#3602 - ENH: Update PETsurfer interface
Pull Request -
State: closed - Opened by mnoergaard about 1 year ago
- 3 comments
#3601 - ENH: Update PETsurfer module
Issue -
State: closed - Opened by mnoergaard about 1 year ago
#3600 - Use out_prefix instead of "w" in spm.Normalize12
Pull Request -
State: closed - Opened by servoz about 1 year ago
- 6 comments
#3599 - Fix typo in spm.Normalize12 process
Pull Request -
State: closed - Opened by servoz about 1 year ago
- 4 comments
#3598 - Bump codespell-project/actions-codespell from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependency
#3597 - MNT: Configure dependabot to update GH workflows
Pull Request -
State: closed - Opened by ghisvail about 1 year ago
- 1 comment
#3596 - FIX: DWIPreproc issue
Pull Request -
State: closed - Opened by GalKepler about 1 year ago
- 3 comments
#3595 - Error in Mrtrix3's DWIPreproc
Issue -
State: closed - Opened by GalKepler about 1 year ago
#3594 - dcm2niix - Do consider exit 1 to be an error
Pull Request -
State: open - Opened by yarikoptic about 1 year ago
- 2 comments
#3593 - FSL FAST output PATH problems
Issue -
State: open - Opened by Ede1994 about 1 year ago
#3592 - dcm2niix node does not error out whenever dcm2niix exits with 1
Issue -
State: open - Opened by yarikoptic about 1 year ago
- 6 comments
#3591 - ANTSRegistration() error formatting command line argument 'transforms'
Issue -
State: closed - Opened by ramroomh about 1 year ago
- 3 comments
#3590 - MNT: Replace deprecated locale.getdefaultlocale
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3589 - CI: Test on Python 3.11
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3588 - MNT: Require Python 3.8+, auto-upgrade syntax
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3587 - FIX: Test failures
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 2 comments
#3586 - DataSink: Add possibility to replace regex match with another regex match in
Issue -
State: open - Opened by JohannesWiesner about 1 year ago
- 1 comment
Labels: enhancement
#3585 - nipype/nipype/interfaces/fsl /preprocess.py - FAST other_priors
Issue -
State: open - Opened by ninea-anasovi about 1 year ago
#3584 - nipype.algorithms.modelgen.SpecifySPMModel: unclear input format for realignment_parameters
Issue -
State: open - Opened by JohannesWiesner over 1 year ago
- 1 comment
#3583 - Fix bugs with `fsl_out=True` and `lta_out=True`
Pull Request -
State: closed - Opened by jadecci over 1 year ago
- 1 comment
#3582 - fsl_out=True does not work for freesurfer.TKregister2
Issue -
State: closed - Opened by jadecci over 1 year ago
#3581 - Error using fsl.EDDY
Issue -
State: open - Opened by DavidBarriere over 1 year ago
- 2 comments
#3580 - Error when running mri_convert from pycham
Issue -
State: open - Opened by MattP1994 over 1 year ago
- 1 comment
Labels: faq
#3579 - dcm2niix converted_files duplicate entry
Issue -
State: closed - Opened by mauriliogenovese over 1 year ago
- 1 comment
#3578 - Issue running nipype.interfaces.spm
Issue -
State: closed - Opened by nmossazg12 over 1 year ago
- 5 comments
#3577 - add contrast outputs for EstimatedModel
Pull Request -
State: closed - Opened by manuegrx over 1 year ago
- 2 comments
#3576 - Missing contrast outputs for SPM EstimateModel
Issue -
State: closed - Opened by manuegrx over 1 year ago
- 1 comment
#3575 - [REF] io.open() → open()
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 1 comment
#3574 - Can't use in Jypeter notebook
Issue -
State: closed - Opened by Planetdtudy over 1 year ago
- 2 comments
#3573 - Mideface integration
Issue -
State: open - Opened by vferat over 1 year ago
- 1 comment
#3572 - MapNode and Workflow.connect show unexpected interaction behavior
Issue -
State: closed - Opened by jadenecke over 1 year ago
- 2 comments
#3571 - FIX: update self.inputs.optimization in outputs for GTMPVC
Pull Request -
State: closed - Opened by mnoergaard over 1 year ago
- 1 comment
#3570 - optmization_schema error in GTMPVC - petsurfer interface
Issue -
State: closed - Opened by mnoergaard over 1 year ago
#3569 - Normalize and Normalize12 use "estimate" and not "est" as the jobtype
Pull Request -
State: closed - Opened by servoz over 1 year ago
- 3 comments