Ecosyste.ms: Issues

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GitHub / nipy/nipype issues and pull requests

#3668 - ENH: tcksift2

Pull Request - State: open - Opened by shachafy about 1 month ago

#3667 - freesurfer reconall outputs missing

Issue - State: open - Opened by JailanOweda about 1 month ago

#3666 - [ENH] Interface for tcksift2

Issue - State: open - Opened by GalKepler about 2 months ago

#3665 - [ENH] Interface for MRTrix's tcksift

Issue - State: open - Opened by GalKepler about 2 months ago

#3664 - Must Obtain Valid Freesurfer License

Issue - State: open - Opened by JBarsotti about 2 months ago

#3663 - Changed inheritence of TensorMetricsInputSpec

Pull Request - State: open - Opened by GalKepler 2 months ago - 1 comment

#3661 - Please consider making nipype compatible with traits >= 6.4

Issue - State: open - Opened by penguinpee 2 months ago - 2 comments

#3659 - Replace deprecated imghdr

Pull Request - State: open - Opened by penguinpee 2 months ago

#3658 - [ENH] Added available inputs for MRTrix3's 5ttgen

Pull Request - State: open - Opened by GalKepler 2 months ago - 2 comments

#3657 - [ENH] Enhance implementation of 5ttgen

Issue - State: open - Opened by GalKepler 2 months ago

#3656 - DWIPreproc references non-existing inputs

Issue - State: closed - Opened by GalKepler 3 months ago - 2 comments

#3652 - ENH: FILMGLS gifti output support in surface mode

Pull Request - State: open - Opened by bogpetre 4 months ago

#3651 - RF: Simplify high-pass filtering in algorithms.confounds

Pull Request - State: open - Opened by effigies 4 months ago - 2 comments

#3650 - [FIX] mat 7.3 support for SPM.mat files

Pull Request - State: open - Opened by adamnarai 4 months ago - 1 comment

#3648 - STY: Apply ruff/refurb rules

Pull Request - State: closed - Opened by DimitriPapadopoulos 5 months ago - 1 comment

#3647 - STY: Apply ruff/pyupgrade rules

Pull Request - State: closed - Opened by DimitriPapadopoulos 5 months ago - 1 comment

#3646 - [ENH] String Interpolation

Issue - State: open - Opened by zachlindsey 6 months ago

#3645 - Set number of threads in MRTrix3's interfaces

Issue - State: open - Opened by oesteban 6 months ago - 2 comments

#3643 - Prov dependency

Issue - State: open - Opened by TheChymera 6 months ago - 2 comments

#3642 - support for gpu queue

Pull Request - State: open - Opened by mauriliogenovese 6 months ago - 3 comments

#3641 - [WIP] FIX - AFNI Zeropad sets out_file

Pull Request - State: open - Opened by zachlindsey 6 months ago - 3 comments

#3640 - AFNI Zeropad out_file undefined

Issue - State: open - Opened by zachlindsey 6 months ago - 1 comment

#3639 - REL: 1.8.7

Pull Request - State: open - Opened by effigies 6 months ago - 9 comments

#3638 - Test Python 3.12 support

Pull Request - State: closed - Opened by effigies 6 months ago

#3637 - FIX: Parse commas in CSV fields

Pull Request - State: closed - Opened by zachlindsey 7 months ago - 1 comment

#3636 - use csvreader for parsing csv files

Pull Request - State: closed - Opened by zachlindsey 7 months ago

#3635 - CSVReader does not handle quoted fields or tsv files

Issue - State: closed - Opened by zachlindsey 7 months ago - 1 comment

#3634 - ENH: add STC PVC to PETPVC interface

Pull Request - State: closed - Opened by mnoergaard 7 months ago - 1 comment

#3632 - Bump the actions-infrastructure group with 3 updates

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependency

#3631 - Leftover Python 2 construct (cmp) is still used

Issue - State: closed - Opened by yarikoptic 7 months ago - 3 comments

#3630 - ENH: added 'hsvs' option to 5ttgen + mrtransform fix

Pull Request - State: closed - Opened by teanijarv 7 months ago - 1 comment

#3629 - DOC/FIX: Fix wrong name, should be al_ea

Pull Request - State: closed - Opened by stebo85 8 months ago - 1 comment

#3628 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependency

#3627 - Adjusted variable names for clarity and codespell false positives

Pull Request - State: closed - Opened by TheChymera 8 months ago - 2 comments

#3626 - Tests on `=nipype-1.8.6` fail with

Issue - State: closed - Opened by TheChymera 8 months ago - 3 comments

#3624 - Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependency

#3623 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependency

#3620 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 3 comments
Labels: dependency

#3618 - antsRegistration not working anymore with recent versions of ANTS

Issue - State: closed - Opened by enzo-bonnot 10 months ago - 3 comments

#3617 - [ENH] Add GenericLabel to ANTS ApplyTransforms.

Pull Request - State: closed - Opened by tsalo 10 months ago - 1 comment

#3615 - Error in MRTrix3 MRTransform

Issue - State: closed - Opened by manuegrx 10 months ago - 8 comments

#3614 - Workflow run return status

Issue - State: closed - Opened by sulantha2006 11 months ago - 1 comment

#3613 - [ENH]: Add functions to mrtrix3 interface

Pull Request - State: closed - Opened by lbutry 11 months ago - 5 comments

#3611 - [FIX] MRTrix3 change inputs position for MRTransform

Pull Request - State: closed - Opened by manuegrx 12 months ago

#3610 - [FIX] Deduplicate dcm2niix output

Pull Request - State: closed - Opened by mauriliogenovese 12 months ago - 3 comments

#3609 - [FIX] Add cropped files to dcm2niix output

Pull Request - State: closed - Opened by mauriliogenovese 12 months ago - 1 comment

#3608 - Add Workflow Community Initiative (WCI) descriptor

Pull Request - State: open - Opened by u11kumar 12 months ago - 2 comments

#3606 - DOC: Fix typos newly found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago - 1 comment

#3605 - Run tests whenever TMPDIR points to some folder with spaces in the name

Pull Request - State: open - Opened by yarikoptic about 1 year ago - 2 comments

#3603 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependency

#3602 - ENH: Update PETsurfer interface

Pull Request - State: closed - Opened by mnoergaard about 1 year ago - 3 comments

#3601 - ENH: Update PETsurfer module

Issue - State: closed - Opened by mnoergaard about 1 year ago

#3600 - Use out_prefix instead of "w" in spm.Normalize12

Pull Request - State: closed - Opened by servoz about 1 year ago - 6 comments

#3599 - Fix typo in spm.Normalize12 process

Pull Request - State: closed - Opened by servoz about 1 year ago - 4 comments

#3598 - Bump codespell-project/actions-codespell from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependency

#3597 - MNT: Configure dependabot to update GH workflows

Pull Request - State: closed - Opened by ghisvail about 1 year ago - 1 comment

#3596 - FIX: DWIPreproc issue

Pull Request - State: closed - Opened by GalKepler about 1 year ago - 3 comments

#3595 - Error in Mrtrix3's DWIPreproc

Issue - State: closed - Opened by GalKepler about 1 year ago

#3594 - dcm2niix - Do consider exit 1 to be an error

Pull Request - State: open - Opened by yarikoptic about 1 year ago - 2 comments

#3593 - FSL FAST output PATH problems

Issue - State: open - Opened by Ede1994 about 1 year ago

#3592 - dcm2niix node does not error out whenever dcm2niix exits with 1

Issue - State: open - Opened by yarikoptic about 1 year ago - 6 comments

#3591 - ANTSRegistration() error formatting command line argument 'transforms'

Issue - State: closed - Opened by ramroomh about 1 year ago - 3 comments

#3590 - MNT: Replace deprecated locale.getdefaultlocale

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3589 - CI: Test on Python 3.11

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3588 - MNT: Require Python 3.8+, auto-upgrade syntax

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3587 - FIX: Test failures

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#3586 - DataSink: Add possibility to replace regex match with another regex match in

Issue - State: open - Opened by JohannesWiesner about 1 year ago - 1 comment
Labels: enhancement

#3583 - Fix bugs with `fsl_out=True` and `lta_out=True`

Pull Request - State: closed - Opened by jadecci over 1 year ago - 1 comment

#3582 - fsl_out=True does not work for freesurfer.TKregister2

Issue - State: closed - Opened by jadecci over 1 year ago

#3581 - Error using fsl.EDDY

Issue - State: open - Opened by DavidBarriere over 1 year ago - 2 comments

#3580 - Error when running mri_convert from pycham

Issue - State: open - Opened by MattP1994 over 1 year ago - 1 comment
Labels: faq

#3579 - dcm2niix converted_files duplicate entry

Issue - State: closed - Opened by mauriliogenovese over 1 year ago - 1 comment

#3578 - Issue running nipype.interfaces.spm

Issue - State: closed - Opened by nmossazg12 over 1 year ago - 5 comments

#3577 - add contrast outputs for EstimatedModel

Pull Request - State: closed - Opened by manuegrx over 1 year ago - 2 comments

#3576 - Missing contrast outputs for SPM EstimateModel

Issue - State: closed - Opened by manuegrx over 1 year ago - 1 comment

#3575 - [REF] io.open() → open()

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#3574 - Can't use in Jypeter notebook

Issue - State: closed - Opened by Planetdtudy over 1 year ago - 2 comments

#3573 - Mideface integration

Issue - State: open - Opened by vferat over 1 year ago - 1 comment

#3572 - MapNode and Workflow.connect show unexpected interaction behavior

Issue - State: closed - Opened by jadenecke over 1 year ago - 2 comments

#3571 - FIX: update self.inputs.optimization in outputs for GTMPVC

Pull Request - State: closed - Opened by mnoergaard over 1 year ago - 1 comment

#3570 - optmization_schema error in GTMPVC - petsurfer interface

Issue - State: closed - Opened by mnoergaard over 1 year ago

#3569 - Normalize and Normalize12 use "estimate" and not "est" as the jobtype

Pull Request - State: closed - Opened by servoz over 1 year ago - 3 comments