Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nipreps/smriprep issues and pull requests

#374 - msmall registration seems off

Issue - State: closed - Opened by Shotgunosine over 1 year ago - 1 comment
Labels: bug

#373 - Build(deps): Bump pillow from 10.0.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 4 comments
Labels: dependencies

#372 - Build(deps): Bump urllib3 from 2.0.4 to 2.0.6

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#370 - ENH: Add sphere registration to fit workflow, check for precomputed

Pull Request - State: closed - Opened by effigies over 1 year ago - 7 comments
Labels: next

#369 - MNT: Use f-strings where possible

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 5 comments

#368 - DOC: fix typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#367 - singularity issue, growing containers and the like

Issue - State: open - Opened by hjbockholt over 1 year ago - 2 comments
Labels: enhancement

#366 - TEST: Add sloppy MSM configuration for use in debugging/CI

Pull Request - State: closed - Opened by effigies over 1 year ago - 2 comments

#365 - ENH: Save msm registration sphere as desc-msm_sphere.surf.gii

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: next

#364 - ENH: Run pytest on CircleCI

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: next

#363 - RF: Replace most of anat_ribbon_wf with a Python function

Pull Request - State: closed - Opened by effigies over 1 year ago - 4 comments
Labels: next

#362 - fMRIPrep-next checklist

Issue - State: closed - Opened by effigies over 1 year ago
Labels: next

#361 - MNT: Update installation environment

Pull Request - State: closed - Opened by effigies over 1 year ago - 2 comments

#361 - MNT: Update installation environment

Pull Request - State: open - Opened by effigies over 1 year ago - 1 comment

#360 - RF: Break up surface workflows for easier mix-and-match in fMRIPrep

Pull Request - State: open - Opened by effigies over 1 year ago

#360 - RF: Break up surface workflows for easier mix-and-match in fMRIPrep

Pull Request - State: closed - Opened by effigies over 1 year ago - 3 comments
Labels: next

#359 - ENH: Separate surfaces and morphometrics into standalone outputs

Pull Request - State: open - Opened by mgxd over 1 year ago - 2 comments

#359 - ENH: Separate surfaces and morphometrics into standalone outputs

Pull Request - State: closed - Opened by mgxd over 1 year ago - 4 comments

#358 - ENH: Add Multimodal Surface Matching

Pull Request - State: open - Opened by mgxd over 1 year ago - 3 comments

#358 - ENH: Add Multimodal Surface Matching

Pull Request - State: closed - Opened by mgxd over 1 year ago - 4 comments

#357 - DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image

Pull Request - State: closed - Opened by psadil over 1 year ago - 6 comments

#356 - Include 3T18yoSchwartzReactN32 in Docker

Issue - State: closed - Opened by psadil over 1 year ago - 2 comments
Labels: bug

#356 - Include 3T18yoSchwartzReactN32 in Docker

Issue - State: closed - Opened by psadil over 1 year ago - 2 comments
Labels: bug

#355 - ENH: insert the gradunwarp workflow in anat template workflow

Pull Request - State: open - Opened by bpinsard over 1 year ago - 14 comments

#355 - ENH: insert the gradunwarp workflow in anat template workflow

Pull Request - State: open - Opened by bpinsard over 1 year ago - 11 comments

#354 - Build(deps): Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#354 - Build(deps): Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#353 - Add MSMSulc

Issue - State: open - Opened by edickie over 1 year ago - 3 comments

#353 - Add MSMSulc

Issue - State: closed - Opened by edickie over 1 year ago - 6 comments

#352 - Built-in Local Gyrification Index (LGI) Flag

Issue - State: open - Opened by margokersey over 1 year ago
Labels: enhancement

#352 - Built-in Local Gyrification Index (LGI) Flag

Issue - State: closed - Opened by margokersey over 1 year ago - 1 comment
Labels: enhancement

#351 - MNT: Infrastructure updates

Pull Request - State: closed - Opened by effigies over 1 year ago

#350 - FIX: Pass sphere_reg_fsLR to ds_reg_fsLR

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: bug

#350 - FIX: Pass sphere_reg_fsLR to ds_reg_fsLR

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: bug

#349 - MNT: fix flake8 warning

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#349 - MNT: fix flake8 warning

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#348 - MNT: apply pyupgrade suggestions

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago

#348 - MNT: apply pyupgrade suggestions

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago

#347 - MNT: Python 3.11 should be supported

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago

#347 - MNT: Python 3.11 should be supported

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago

#346 - MNT: fix typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#346 - MNT: fix typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#345 - REL: 0.12.0

Pull Request - State: closed - Opened by effigies over 1 year ago

#344 - MNT: Add `sloppy` argument to workflows, distinguish from `debug`

Pull Request - State: closed - Opened by mgxd over 1 year ago - 4 comments

#344 - MNT: Add `sloppy` argument to workflows, distinguish from `debug`

Pull Request - State: closed - Opened by mgxd over 1 year ago - 4 comments

#343 - Add option to use SynthSeg as alternative to recon-all

Issue - State: open - Opened by tsalo over 1 year ago - 4 comments
Labels: enhancement

#343 - Add option to use SynthSeg as alternative to recon-all

Issue - State: open - Opened by tsalo over 1 year ago - 5 comments
Labels: enhancement

#342 - WRAPPER: docker unable to find image of version 0.11.0

Issue - State: closed - Opened by Kellsens over 1 year ago - 2 comments

#341 - FLAIR surface refinement not mentioned in boilerplate text

Issue - State: closed - Opened by effigies over 1 year ago
Labels: bug, reports

#340 - Output FreeSurfer surface area in fsLR space

Issue - State: closed - Opened by tsalo almost 2 years ago - 2 comments
Labels: enhancement

#339 - ENH: Project fsLR mesh onto native sphere to enable single-shot resampling into fsLR

Pull Request - State: closed - Opened by effigies almost 2 years ago - 3 comments

#338 - Add white FreeSurfer surface to derivatives; replace smoothwm?

Issue - State: closed - Opened by effigies almost 2 years ago
Labels: enhancement

#337 - ENH: Use ANTs DenoiseImage before conforming anatomical images

Pull Request - State: closed - Opened by effigies almost 2 years ago - 4 comments

#336 - FIX: Query templateflow files to see if resolution is available

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#335 - DEP: Loosen niworkflow restriction

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#334 - smriprep unable to allocate job

Issue - State: closed - Opened by girishmm almost 2 years ago - 4 comments
Labels: bug

#333 - CI: Fix codecov in CircleCI, remove Travis config

Pull Request - State: closed - Opened by effigies almost 2 years ago - 1 comment

#332 - PATCH: Add security fix to vendored jquery

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#331 - CI: Prioritize tags on release

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 1 comment

#330 - Docker pushes fail on tags

Issue - State: closed - Opened by effigies almost 2 years ago - 1 comment
Labels: bug

#329 - DOC: Update boilerplate generation with *TemplateFlow* reference

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 1 comment

#328 - RF: Reflect function name on nipype workflow

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 1 comment

#327 - Add Connectome Workbench to listed external dependencies

Issue - State: closed - Opened by effigies almost 2 years ago - 1 comment
Labels: documentation

#326 - smriprep errors out during autorecon2-vol due to missing lta file

Issue - State: closed - Opened by girishmm almost 2 years ago - 3 comments

#325 - ENH: Enable resampling morphometrics to fsLR CIFTI-2 files

Pull Request - State: closed - Opened by effigies almost 2 years ago - 5 comments

#324 - Can smriprep be used to create a custom template?

Issue - State: closed - Opened by dkp about 2 years ago - 2 comments
Labels: documentation

#323 - CI: Update build to match fMRIPrep

Pull Request - State: closed - Opened by effigies about 2 years ago - 1 comment

#322 - ENH: Add cortical ribbon workflow

Pull Request - State: closed - Opened by effigies about 2 years ago - 1 comment

#321 - ENH: make cortical ribbon volume based on signed distance of white/pial surfaces

Pull Request - State: closed - Opened by madisoth about 2 years ago - 1 comment

#320 - Replace hardcoded `t1w` with `anat` for multi-modality workflows / nodes

Issue - State: open - Opened by mgxd about 2 years ago - 1 comment
Labels: effort:medium, impact:low, maintenance

#319 - ENH: Merge T2w images and coregister to T1w template

Pull Request - State: closed - Opened by effigies about 2 years ago - 3 comments

#318 - --output-layout bids as default for 0.10.x series

Issue - State: open - Opened by effigies about 2 years ago
Labels: enhancement

#317 - FIX: Ensure `FSSurfaceReport` uses nii images

Pull Request - State: closed - Opened by mgxd about 2 years ago - 1 comment

#316 - `FSSurfaceReport` MGHImage incompatibility

Issue - State: closed - Opened by mgxd about 2 years ago - 1 comment
Labels: bug

#315 - MAINT: Rotate CircleCI secrets and setup up org-level context

Pull Request - State: closed - Opened by oesteban about 2 years ago
Labels: backport-candidate

#314 - the volume and surface in T1w sapce didn't align precisely

Issue - State: closed - Opened by precity over 2 years ago - 1 comment
Labels: bug, lts

#313 - REL: 0.10.0

Pull Request - State: closed - Opened by effigies about 2 years ago - 1 comment

#313 - REL: 0.10.0

Pull Request - State: closed - Opened by effigies about 2 years ago - 1 comment

#312 - FIX: Expand surfaces pattern to allow morphometrics

Pull Request - State: closed - Opened by mgxd about 2 years ago

#311 - ENH: Bind FreeSurfer subjects directory

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#311 - ENH: Bind FreeSurfer subjects directory

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#310 - CI: Fix expected ds054 outputs

Pull Request - State: closed - Opened by effigies over 2 years ago

#310 - CI: Fix expected ds054 outputs

Pull Request - State: closed - Opened by effigies over 2 years ago

#309 - WRAPPER: Update patch location, use --patch syntax

Pull Request - State: closed - Opened by effigies over 2 years ago - 1 comment

#309 - WRAPPER: Update patch location, use --patch syntax

Pull Request - State: closed - Opened by effigies over 2 years ago - 1 comment

#308 - CI: Set max Python version to 3.10

Pull Request - State: closed - Opened by effigies over 2 years ago

#308 - CI: Set max Python version to 3.10

Pull Request - State: closed - Opened by effigies over 2 years ago

#307 - autorecon3 always rerun

Issue - State: closed - Opened by effigies over 2 years ago - 2 comments
Labels: bug

#307 - autorecon3 always rerun

Issue - State: open - Opened by effigies over 2 years ago - 1 comment
Labels: bug

#306 - Improve documentation on longitudinal option.

Issue - State: open - Opened by bpinsard over 2 years ago - 1 comment
Labels: documentation

#306 - Improve documentation on longitudinal option.

Issue - State: open - Opened by bpinsard over 2 years ago - 1 comment
Labels: documentation

#305 - ENH: Output thickness, curvature, and sulcal depth files

Pull Request - State: closed - Opened by mgxd over 2 years ago - 7 comments

#305 - ENH: Output thickness, curvature, and sulcal depth files

Pull Request - State: closed - Opened by mgxd over 2 years ago - 7 comments

#304 - CI: Simplify actions to build once, test many

Pull Request - State: closed - Opened by effigies over 2 years ago - 2 comments

#304 - CI: Simplify actions to build once, test many

Pull Request - State: closed - Opened by effigies over 2 years ago - 2 comments

#303 - RF: Split anatomical workflow into fit and derivatives workflows

Pull Request - State: closed - Opened by effigies over 2 years ago - 3 comments
Labels: next

#302 - CI: Update CircleCI docker orb

Pull Request - State: closed - Opened by effigies over 2 years ago

#302 - CI: Update CircleCI docker orb

Pull Request - State: closed - Opened by effigies over 2 years ago

#301 - WRAPPER: Fix help merge in smriprep-docker

Pull Request - State: closed - Opened by effigies over 2 years ago