Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/sdcflows issues and pull requests
#454 - Repair 3dQwarp workflow
Pull Request -
State: open - Opened by psadil 3 months ago
- 1 comment
#453 - FIX: Revision of the B-Spline fitting code
Pull Request -
State: closed - Opened by oesteban 3 months ago
- 2 comments
#452 - ENH: Improve plots in jupyter notebook
Pull Request -
State: closed - Opened by oesteban 3 months ago
#450 - [FIX] [DOC] ValueError in notebook output.
Pull Request -
State: closed - Opened by mathdugre 3 months ago
- 1 comment
#449 - [FIX] Building Docker image on ARM64 devices
Pull Request -
State: closed - Opened by mathdugre 3 months ago
- 1 comment
#448 - Some cells of the notebook not rendering
Issue -
State: closed - Opened by oesteban 3 months ago
- 1 comment
Labels: bug
#447 - inconsistent contrast in PEB/PEPOLAR
Issue -
State: open - Opened by mitchellxh 4 months ago
Labels: bug
#446 - refactor: Notebook plots personalised
Pull Request -
State: closed - Opened by jmarabotto 4 months ago
- 2 comments
#445 - REL: 2.9.0
Pull Request -
State: closed - Opened by effigies 4 months ago
- 1 comment
#444 - RF: Add sanitized_id field to FieldmapEstimation
Pull Request -
State: closed - Opened by effigies 4 months ago
- 5 comments
#443 - Revert "Remove non-alphanumeric characters from workflow names and output entities"
Pull Request -
State: closed - Opened by effigies 4 months ago
#442 - NodeExecutionError triggered when using `UniformGrid` and images with slightly different affines
Issue -
State: closed - Opened by psadil 4 months ago
- 3 comments
Labels: bug
#441 - `init_3dQwarp_wf` expects input that is missing from inputnode
Issue -
State: open - Opened by psadil 4 months ago
- 3 comments
Labels: bug
#440 - DOC: Un-mock the already-imported numpy
Pull Request -
State: closed - Opened by effigies 5 months ago
#439 - docs-building jobs failing
Issue -
State: closed - Opened by tsalo 5 months ago
Labels: bug
#438 - Draft MEDIC dynamic distortion correction method (second attempt)
Pull Request -
State: open - Opened by tsalo 5 months ago
- 1 comment
#437 - Replace non-word/special characters from B0FieldIdentifier/Source tags
Pull Request -
State: closed - Opened by marcelzwiers 6 months ago
- 2 comments
#436 - FIX: Update suffix only when finding related fieldmap files
Pull Request -
State: closed - Opened by marcelzwiers 6 months ago
#435 - Draft MEDIC dynamic distortion correction method
Pull Request -
State: closed - Opened by tsalo 6 months ago
- 4 comments
#434 - Remove non-alphanumeric characters from workflow names and output entities
Pull Request -
State: closed - Opened by tsalo 6 months ago
- 5 comments
#433 - test(deps): Test against scipy 1.12
Pull Request -
State: closed - Opened by effigies 8 months ago
#432 - build(deps): bump codecov/codecov-action from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#431 - FIX: Remove unused ANTs parameter that was removed in 2.4.1
Pull Request -
State: closed - Opened by lalalavi 8 months ago
- 11 comments
#430 - ds004024 misalignment of BOLD and fieldmap
Issue -
State: open - Opened by effigies 8 months ago
Labels: bug
#429 - build(deps): bump actions/cache from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies
#428 - CI: Move PR doc build into main doc build, add texlive to build dependencies
Pull Request -
State: closed - Opened by effigies 9 months ago
#427 - FIX: Documentation was not building because of warnings issued from nbsphinx's output
Pull Request -
State: closed - Opened by oesteban 9 months ago
#426 - FIX: Enable fieldmapless by default in CLI
Pull Request -
State: closed - Opened by effigies 9 months ago
#425 - FIX: New test ``test_wrangler_URIs`` had the wrong oracle
Pull Request -
State: closed - Opened by oesteban 9 months ago
#424 - TEST: Use less confusing function name for testing CLI with --dry-run
Pull Request -
State: closed - Opened by oesteban 9 months ago
#423 - REL: 2.8.0
Pull Request -
State: closed - Opened by effigies 9 months ago
#422 - Excessive SyN runtime
Issue -
State: open - Opened by effigies 9 months ago
Labels: bug
#421 - FIX: Derive field from SyN displacements using EPI affine
Pull Request -
State: closed - Opened by effigies 9 months ago
- 2 comments
#420 - Add @smeisler to contributors
Pull Request -
State: closed - Opened by smeisler 10 months ago
- 1 comment
#419 - [FIX] Change `os.basename` to `os.path.basename`
Pull Request -
State: closed - Opened by smeisler 10 months ago
- 2 comments
#418 - build(deps): bump actions/download-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#417 - build(deps): bump actions/upload-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#416 - REL: 2.7.0
Pull Request -
State: closed - Opened by effigies 10 months ago
- 2 comments
#415 - FIX: Drop header before resampling image to avoid unsafe cast
Pull Request -
State: closed - Opened by effigies 10 months ago
- 2 comments
#414 - Doc builds broken
Issue -
State: closed - Opened by effigies 10 months ago
- 2 comments
Labels: bug
#413 - Noticeable difference in scanner-computed fieldmap results since LTS
Issue -
State: open - Opened by effigies 10 months ago
Labels: bug
#412 - build(deps): bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#411 - ENH: Add support for ASL data
Pull Request -
State: closed - Opened by tsalo 10 months ago
- 1 comment
#410 - MAINT: Migrate to PEP517/518 packaging
Pull Request -
State: closed - Opened by oesteban 10 months ago
- 1 comment
#409 - ENH: Enable rendering of the Jupyter notebooks
Pull Request -
State: closed - Opened by oesteban 10 months ago
#408 - ENH: Standalone CLI now estimates fieldmaps
Pull Request -
State: closed - Opened by oesteban 10 months ago
- 2 comments
#407 - FIX: Wrangler now ignores ``part-phase`` EPI files
Pull Request -
State: closed - Opened by oesteban 10 months ago
#406 - build(deps): bump conda-incubator/setup-miniconda from 2 to 3
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#405 - Make suffixes and datatypes configurable, if possible
Issue -
State: open - Opened by tsalo 11 months ago
- 3 comments
Labels: enhancement
#404 - REL: 2.6.0
Pull Request -
State: closed - Opened by effigies 11 months ago
- 3 comments
#403 - build(deps): bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies
#402 - MNT: Modernize Docker/GHA
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
#401 - MNT: Update AFNI installation on Docker
Pull Request -
State: closed - Opened by effigies 11 months ago
#400 - Dangling symlinks prevents collecting unused fieldmaps
Issue -
State: open - Opened by effigies 11 months ago
- 1 comment
#399 - DOC: Fix doc build for 2.5.x branch
Pull Request -
State: closed - Opened by effigies 12 months ago
#398 - FIX: Mask fieldmap before fitting spline field [backport gh-396]
Pull Request -
State: closed - Opened by effigies 12 months ago
- 1 comment
#397 - ENH: Implement Jacobian weighting during unwarp [backport gh-391]
Pull Request -
State: closed - Opened by effigies 12 months ago
- 6 comments
#396 - FIX: Mask fieldmap before fitting spline field
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 2 comments
#395 - FIX: Mask B0 field estimate during application
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 2 comments
#394 - FIX: Interpolate to floating point values
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
Labels: bug
#393 - RF: Use scipy.interpolate.BSpline to construct spline basis
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 3 comments
#392 - SDCflows standalone example
Issue -
State: closed - Opened by SRSteinkamp about 1 year ago
- 2 comments
Labels: documentation
#391 - ENH: Implement Jacobian weighting during unwarp
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 8 comments
#390 - DOC: Use latest sphinx to fix bad sphinx/furo interaction
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#389 - DOC: Use latest sphinx to fix bad sphinx/furo interaction
Pull Request -
State: closed - Opened by effigies about 1 year ago
#388 - FIX: Clean up ``scipy.signal.cubic`` deprecation
Pull Request -
State: closed - Opened by oesteban about 1 year ago
- 12 comments
#387 - MAINT: Update emprical values in test to allow transition to new scipy's BSpline
Pull Request -
State: closed - Opened by oesteban about 1 year ago
#386 - Revise ``InputMultiObject`` of the BSpline interface
Issue -
State: open - Opened by oesteban about 1 year ago
- 1 comment
Labels: bug
#385 - ENH: Allow unwarp to apply only to references
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 6 comments
#384 - Wrangler: discard `part-phase` from `_epi`
Issue -
State: closed - Opened by oesteban about 1 year ago
- 1 comment
Labels: bug
#383 - Add function to selectively remove estimators from the registry
Issue -
State: open - Opened by mgxd about 1 year ago
Labels: enhancement
#382 - Implement Jacobian attenuation in the target space
Issue -
State: closed - Opened by effigies about 1 year ago
Labels: enhancement
#381 - ENH: Output target2fmap_xfm from coeff2epi_wf
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#380 - DOC: Fix missing dependency when merging new data loader
Pull Request -
State: closed - Opened by oesteban about 1 year ago
#379 - ENH: Add data loader to sdcflows.data, drop pkg_resources
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 2 comments
#378 - FIX: Migrate from ``pkg_resources.resource_filename`` to ``importlib_resources``
Pull Request -
State: closed - Opened by oesteban about 1 year ago
- 3 comments
#377 - Unable to `pkg_resources.resource_filename` to locate data files
Issue -
State: closed - Opened by oesteban about 1 year ago
- 1 comment
Labels: bug
#376 - `HCP101006/sub-101006/fmap/sub-101006_dir-LR_epi.json` has wrong sign in PE direction
Issue -
State: closed - Opened by oesteban about 1 year ago
- 8 comments
Labels: bug
#375 - MNT: Add pre-commit config
Pull Request -
State: closed - Opened by effigies about 1 year ago
#374 - FIX: Nipype workflows like to be passed absolute paths (phasediff fieldmap)
Pull Request -
State: closed - Opened by oesteban about 1 year ago
#373 - Build(deps): Bump scipy from 1.8.1 to 1.10.0
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#372 - FIX: Make call to scipy.stats.mode compatible with scipy 1.11.0
Pull Request -
State: closed - Opened by effigies about 1 year ago
#371 - MAINT: Make call to scipy.stats.mode compatible with scipy 1.11.0
Pull Request -
State: closed - Opened by HippocampusGirl about 1 year ago
- 2 comments
#370 - ``scipy.signal.cubic`` is now deprecated
Issue -
State: closed - Opened by oesteban about 1 year ago
- 3 comments
Labels: bug
#369 - Revise tolerance of ``sdcflows/interfaces/tests/test_bspline.py::test_bsplines``
Issue -
State: open - Opened by oesteban over 1 year ago
Labels: bug
#368 - MAINT: Add a seed to random generator of coefficients
Pull Request -
State: closed - Opened by oesteban over 1 year ago
#367 - FIX: Ensure metadata is not present in entities
Pull Request -
State: closed - Opened by mgxd over 1 year ago
- 1 comment
#366 - FIX: Use lsqr solver for spline fit, rerun on extreme values
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#365 - Ridge regression in BSplineApprox can randomly produce garbage
Issue -
State: closed - Opened by effigies over 1 year ago
- 2 comments
Labels: bug
#364 - RF/FIX: Prioritize sbref and shortest echo for SyN-SDC
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#363 - SyN-SDC includes multiple echos
Issue -
State: closed - Opened by effigies over 1 year ago
Labels: bug
#362 - Poor SyN registration
Issue -
State: closed - Opened by effigies over 1 year ago
- 2 comments
Labels: bug
#361 - REL: 2.5.0
Pull Request -
State: closed - Opened by effigies over 1 year ago
#360 - FIX: Ensure IntendedFor metadata is a subject-relative path
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#359 - FIX: do not omit session bids_filter when listing b0 ids
Pull Request -
State: closed - Opened by bpinsard over 1 year ago
- 5 comments
#356 - ENH: Check registration of magnitude1/magnitude2 images and update headers
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#349 - ENH: Resolve BIDS-URIs
Pull Request -
State: closed - Opened by effigies over 1 year ago
#346 - FIX: Refactoring the ``B0FieldTransform`` implementation
Pull Request -
State: closed - Opened by oesteban over 1 year ago
- 40 comments
#345 - *The problem* of SDCFlows (and how to fix it)
Issue -
State: closed - Opened by oesteban over 1 year ago
- 11 comments
Labels: enhancement
#344 - Add --bids-filter-file to sdcflows-find-estimators
Issue -
State: closed - Opened by effigies over 1 year ago
- 1 comment
Labels: enhancement