Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nipreps/sdcflows issues and pull requests

#454 - Repair 3dQwarp workflow

Pull Request - State: open - Opened by psadil 3 months ago - 1 comment

#453 - FIX: Revision of the B-Spline fitting code

Pull Request - State: closed - Opened by oesteban 3 months ago - 2 comments

#452 - ENH: Improve plots in jupyter notebook

Pull Request - State: closed - Opened by oesteban 3 months ago

#450 - [FIX] [DOC] ValueError in notebook output.

Pull Request - State: closed - Opened by mathdugre 3 months ago - 1 comment

#449 - [FIX] Building Docker image on ARM64 devices

Pull Request - State: closed - Opened by mathdugre 3 months ago - 1 comment

#448 - Some cells of the notebook not rendering

Issue - State: closed - Opened by oesteban 3 months ago - 1 comment
Labels: bug

#447 - inconsistent contrast in PEB/PEPOLAR

Issue - State: open - Opened by mitchellxh 4 months ago
Labels: bug

#446 - refactor: Notebook plots personalised

Pull Request - State: closed - Opened by jmarabotto 4 months ago - 2 comments

#445 - REL: 2.9.0

Pull Request - State: closed - Opened by effigies 4 months ago - 1 comment

#444 - RF: Add sanitized_id field to FieldmapEstimation

Pull Request - State: closed - Opened by effigies 4 months ago - 5 comments

#441 - `init_3dQwarp_wf` expects input that is missing from inputnode

Issue - State: open - Opened by psadil 4 months ago - 3 comments
Labels: bug

#440 - DOC: Un-mock the already-imported numpy

Pull Request - State: closed - Opened by effigies 5 months ago

#439 - docs-building jobs failing

Issue - State: closed - Opened by tsalo 5 months ago
Labels: bug

#438 - Draft MEDIC dynamic distortion correction method (second attempt)

Pull Request - State: open - Opened by tsalo 5 months ago - 1 comment

#437 - Replace non-word/special characters from B0FieldIdentifier/Source tags

Pull Request - State: closed - Opened by marcelzwiers 6 months ago - 2 comments

#436 - FIX: Update suffix only when finding related fieldmap files

Pull Request - State: closed - Opened by marcelzwiers 6 months ago

#435 - Draft MEDIC dynamic distortion correction method

Pull Request - State: closed - Opened by tsalo 6 months ago - 4 comments

#434 - Remove non-alphanumeric characters from workflow names and output entities

Pull Request - State: closed - Opened by tsalo 6 months ago - 5 comments

#433 - test(deps): Test against scipy 1.12

Pull Request - State: closed - Opened by effigies 8 months ago

#432 - build(deps): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies

#431 - FIX: Remove unused ANTs parameter that was removed in 2.4.1

Pull Request - State: closed - Opened by lalalavi 8 months ago - 11 comments

#430 - ds004024 misalignment of BOLD and fieldmap

Issue - State: open - Opened by effigies 8 months ago
Labels: bug

#429 - build(deps): bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#426 - FIX: Enable fieldmapless by default in CLI

Pull Request - State: closed - Opened by effigies 9 months ago

#425 - FIX: New test ``test_wrangler_URIs`` had the wrong oracle

Pull Request - State: closed - Opened by oesteban 9 months ago

#423 - REL: 2.8.0

Pull Request - State: closed - Opened by effigies 9 months ago

#422 - Excessive SyN runtime

Issue - State: open - Opened by effigies 9 months ago
Labels: bug

#421 - FIX: Derive field from SyN displacements using EPI affine

Pull Request - State: closed - Opened by effigies 9 months ago - 2 comments

#420 - Add @smeisler to contributors

Pull Request - State: closed - Opened by smeisler 10 months ago - 1 comment

#419 - [FIX] Change `os.basename` to `os.path.basename`

Pull Request - State: closed - Opened by smeisler 10 months ago - 2 comments

#418 - build(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#417 - build(deps): bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#416 - REL: 2.7.0

Pull Request - State: closed - Opened by effigies 10 months ago - 2 comments

#415 - FIX: Drop header before resampling image to avoid unsafe cast

Pull Request - State: closed - Opened by effigies 10 months ago - 2 comments

#414 - Doc builds broken

Issue - State: closed - Opened by effigies 10 months ago - 2 comments
Labels: bug

#413 - Noticeable difference in scanner-computed fieldmap results since LTS

Issue - State: open - Opened by effigies 10 months ago
Labels: bug

#412 - build(deps): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#411 - ENH: Add support for ASL data

Pull Request - State: closed - Opened by tsalo 10 months ago - 1 comment

#410 - MAINT: Migrate to PEP517/518 packaging

Pull Request - State: closed - Opened by oesteban 10 months ago - 1 comment

#409 - ENH: Enable rendering of the Jupyter notebooks

Pull Request - State: closed - Opened by oesteban 10 months ago

#408 - ENH: Standalone CLI now estimates fieldmaps

Pull Request - State: closed - Opened by oesteban 10 months ago - 2 comments

#407 - FIX: Wrangler now ignores ``part-phase`` EPI files

Pull Request - State: closed - Opened by oesteban 10 months ago

#406 - build(deps): bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#405 - Make suffixes and datatypes configurable, if possible

Issue - State: open - Opened by tsalo 11 months ago - 3 comments
Labels: enhancement

#404 - REL: 2.6.0

Pull Request - State: closed - Opened by effigies 11 months ago - 3 comments

#403 - build(deps): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#402 - MNT: Modernize Docker/GHA

Pull Request - State: closed - Opened by effigies 11 months ago - 1 comment

#401 - MNT: Update AFNI installation on Docker

Pull Request - State: closed - Opened by effigies 11 months ago

#400 - Dangling symlinks prevents collecting unused fieldmaps

Issue - State: open - Opened by effigies 11 months ago - 1 comment

#399 - DOC: Fix doc build for 2.5.x branch

Pull Request - State: closed - Opened by effigies 12 months ago

#398 - FIX: Mask fieldmap before fitting spline field [backport gh-396]

Pull Request - State: closed - Opened by effigies 12 months ago - 1 comment

#397 - ENH: Implement Jacobian weighting during unwarp [backport gh-391]

Pull Request - State: closed - Opened by effigies 12 months ago - 6 comments

#396 - FIX: Mask fieldmap before fitting spline field

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#395 - FIX: Mask B0 field estimate during application

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#394 - FIX: Interpolate to floating point values

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment
Labels: bug

#393 - RF: Use scipy.interpolate.BSpline to construct spline basis

Pull Request - State: closed - Opened by effigies about 1 year ago - 3 comments

#392 - SDCflows standalone example

Issue - State: closed - Opened by SRSteinkamp about 1 year ago - 2 comments
Labels: documentation

#391 - ENH: Implement Jacobian weighting during unwarp

Pull Request - State: closed - Opened by effigies about 1 year ago - 8 comments

#390 - DOC: Use latest sphinx to fix bad sphinx/furo interaction

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#389 - DOC: Use latest sphinx to fix bad sphinx/furo interaction

Pull Request - State: closed - Opened by effigies about 1 year ago

#388 - FIX: Clean up ``scipy.signal.cubic`` deprecation

Pull Request - State: closed - Opened by oesteban about 1 year ago - 12 comments

#386 - Revise ``InputMultiObject`` of the BSpline interface

Issue - State: open - Opened by oesteban about 1 year ago - 1 comment
Labels: bug

#385 - ENH: Allow unwarp to apply only to references

Pull Request - State: closed - Opened by effigies about 1 year ago - 6 comments

#384 - Wrangler: discard `part-phase` from `_epi`

Issue - State: closed - Opened by oesteban about 1 year ago - 1 comment
Labels: bug

#383 - Add function to selectively remove estimators from the registry

Issue - State: open - Opened by mgxd about 1 year ago
Labels: enhancement

#382 - Implement Jacobian attenuation in the target space

Issue - State: closed - Opened by effigies about 1 year ago
Labels: enhancement

#381 - ENH: Output target2fmap_xfm from coeff2epi_wf

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#380 - DOC: Fix missing dependency when merging new data loader

Pull Request - State: closed - Opened by oesteban about 1 year ago

#379 - ENH: Add data loader to sdcflows.data, drop pkg_resources

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#378 - FIX: Migrate from ``pkg_resources.resource_filename`` to ``importlib_resources``

Pull Request - State: closed - Opened by oesteban about 1 year ago - 3 comments

#377 - Unable to `pkg_resources.resource_filename` to locate data files

Issue - State: closed - Opened by oesteban about 1 year ago - 1 comment
Labels: bug

#376 - `HCP101006/sub-101006/fmap/sub-101006_dir-LR_epi.json` has wrong sign in PE direction

Issue - State: closed - Opened by oesteban about 1 year ago - 8 comments
Labels: bug

#375 - MNT: Add pre-commit config

Pull Request - State: closed - Opened by effigies about 1 year ago

#373 - Build(deps): Bump scipy from 1.8.1 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#372 - FIX: Make call to scipy.stats.mode compatible with scipy 1.11.0

Pull Request - State: closed - Opened by effigies about 1 year ago

#371 - MAINT: Make call to scipy.stats.mode compatible with scipy 1.11.0

Pull Request - State: closed - Opened by HippocampusGirl about 1 year ago - 2 comments

#370 - ``scipy.signal.cubic`` is now deprecated

Issue - State: closed - Opened by oesteban about 1 year ago - 3 comments
Labels: bug

#368 - MAINT: Add a seed to random generator of coefficients

Pull Request - State: closed - Opened by oesteban over 1 year ago

#367 - FIX: Ensure metadata is not present in entities

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#366 - FIX: Use lsqr solver for spline fit, rerun on extreme values

Pull Request - State: closed - Opened by effigies over 1 year ago - 2 comments

#365 - Ridge regression in BSplineApprox can randomly produce garbage

Issue - State: closed - Opened by effigies over 1 year ago - 2 comments
Labels: bug

#364 - RF/FIX: Prioritize sbref and shortest echo for SyN-SDC

Pull Request - State: closed - Opened by effigies over 1 year ago - 2 comments

#363 - SyN-SDC includes multiple echos

Issue - State: closed - Opened by effigies over 1 year ago
Labels: bug

#362 - Poor SyN registration

Issue - State: closed - Opened by effigies over 1 year ago - 2 comments
Labels: bug

#361 - REL: 2.5.0

Pull Request - State: closed - Opened by effigies over 1 year ago

#360 - FIX: Ensure IntendedFor metadata is a subject-relative path

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment

#359 - FIX: do not omit session bids_filter when listing b0 ids

Pull Request - State: closed - Opened by bpinsard over 1 year ago - 5 comments

#356 - ENH: Check registration of magnitude1/magnitude2 images and update headers

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment

#349 - ENH: Resolve BIDS-URIs

Pull Request - State: closed - Opened by effigies over 1 year ago

#346 - FIX: Refactoring the ``B0FieldTransform`` implementation

Pull Request - State: closed - Opened by oesteban over 1 year ago - 40 comments

#345 - *The problem* of SDCFlows (and how to fix it)

Issue - State: closed - Opened by oesteban over 1 year ago - 11 comments
Labels: enhancement

#344 - Add --bids-filter-file to sdcflows-find-estimators

Issue - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: enhancement