Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nipreps/niworkflows issues and pull requests

#924 - Add tolerance parameter to `MatchHeader`

Issue - State: open - Opened by mgxd 16 days ago
Labels: enhancement, help wanted, effort:low

#923 - STY: Format + add git blame ignore file

Pull Request - State: closed - Opened by mgxd about 1 month ago

#922 - ENH: Parse kwargs to allow no T1w

Pull Request - State: closed - Opened by mgxd about 1 month ago - 1 comment

#921 - Build(deps): Bump jinja2 from 3.1.4 to 3.1.5

Pull Request - State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, python

#920 - Build(deps): Bump astral-sh/setup-uv from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#919 - STY: Apply ruff rules (RUF)

Pull Request - State: open - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#918 - STY: Apply ruff/refurb rules (FURB)

Pull Request - State: open - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#917 - STY: Apply ruff/flynt rule FLY002

Pull Request - State: open - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#916 - STY: Apply ruff/Pylint rule PLR0402

Pull Request - State: closed - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#915 - SYT: Apply ruff/pygrep-hooks rule PGH003

Pull Request - State: open - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#914 - STY: Apply ruff/flake8-pie rules (PIE)

Pull Request - State: closed - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#913 - STY: Apply ruff/flake8-simplify rules (SIM)

Pull Request - State: open - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#912 - STY: Apply ruff/flake8-comprehensions preview rule C409

Pull Request - State: closed - Opened by DimitriPapadopoulos 2 months ago - 1 comment

#911 - ENH: Allow adjusting histogram matching of configuration files

Pull Request - State: closed - Opened by mgxd 2 months ago - 1 comment

#910 - REL: 1.12.0

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#909 - chore: Enable 3.13 tests

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#908 - Build(deps): Bump astral-sh/setup-uv from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#907 - Build(deps): Bump actions/upload-artifact from 3 to 4 in the actions-infrastructure group

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#906 - fix: Pandas deprecations

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#906 - fix: Pandas deprecations

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#905 - fix: Numpy 2 compatibility

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#905 - fix: Numpy 2 compatibility

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#904 - chore/sty: Replace black+flake8 with ruff, add pre-commit

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#902 - Build(deps): Bump codecov/codecov-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies, github_actions

#900 - chore: Switch to tox for testing and CI

Pull Request - State: closed - Opened by effigies 3 months ago - 2 comments

#899 - Add boldmap suffix to filename patterns

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment

#898 - Add optional dir entity to T2starmap pattern

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment

#897 - CI: Fix get_data job on CircleCI

Pull Request - State: closed - Opened by effigies 4 months ago - 1 comment

#896 - MNT: Drop Python 3.8, update dependencies

Pull Request - State: closed - Opened by effigies 4 months ago

#895 - fix(test): CIFTI2 expected checksum has changed

Pull Request - State: closed - Opened by effigies 4 months ago

#895 - fix(test): CIFTI2 expected checksum has changed

Pull Request - State: closed - Opened by effigies 4 months ago

#894 - Alternative gradient non-linearity distortion correction workflow / interface

Issue - State: open - Opened by Lestropie 4 months ago - 3 comments
Labels: enhancement

#893 - Build(deps): Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 3 comments
Labels: dependencies, github_actions

#892 - STY: Use f-string within normalization interface

Pull Request - State: closed - Opened by oesteban 6 months ago

#891 - ENH: Add volspace and volcohort entities to IO config file

Pull Request - State: closed - Opened by tsalo 6 months ago - 4 comments

#889 - Support `nativemax` and `nativemin` as space resolutions

Issue - State: open - Opened by tsalo 6 months ago - 2 comments
Labels: enhancement

#888 - Check 2D spaces against list from templateflow

Pull Request - State: closed - Opened by tsalo 7 months ago - 2 comments

#887 - Build(deps): Bump certifi from 2024.2.2 to 2024.7.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#886 - REL: 1.11.0

Pull Request - State: closed - Opened by mgxd 7 months ago - 2 comments

#885 - ENH: Add PrepareDerivative/SaveDerivative interfaces

Pull Request - State: closed - Opened by effigies 7 months ago - 3 comments

#884 - Data loader fails with NiWorkflows installed in editable mode

Issue - State: closed - Opened by oesteban 7 months ago - 2 comments
Labels: bug

#883 - ENH: Support combined surface-volume reference spaces

Pull Request - State: open - Opened by tsalo 7 months ago - 1 comment

#882 - `dim` attribute in `References` is incorrect for non-Freesurfer surfaces

Issue - State: closed - Opened by tsalo 7 months ago
Labels: bug

#881 - Distinguish between surface and volume spaces in `Reference`

Issue - State: open - Opened by tsalo 7 months ago - 4 comments
Labels: enhancement

#880 - TEST: Fix plugin invocation, use an initializer that can be verified

Pull Request - State: closed - Opened by effigies 7 months ago - 1 comment

#879 - ADD: Make template dimensions support T2w as well

Pull Request - State: closed - Opened by mgxd 7 months ago - 3 comments

#878 - FIX: Set cal_max in the NIfTI header for visualization after ``IntensityClip``

Pull Request - State: closed - Opened by oesteban 8 months ago - 1 comment

#877 - Set cal_max properly in ``IntensityClip``

Issue - State: closed - Opened by oesteban 8 months ago

#875 - mriqc not installed as dependency

Issue - State: closed - Opened by sjshim 8 months ago - 4 comments
Labels: bug

#874 - Build(deps): Bump scikit-learn from 1.4.1.post1 to 1.5.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, python

#873 - Build(deps): Bump urllib3 from 2.2.1 to 2.2.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, python

#872 - Build(deps): Bump requests from 2.31.0 to 2.32.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, python

#871 - Build(deps): Bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#870 - STY: Apply ruff/flake8-implicit-str-concat rule ISC001

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 1 comment

#869 - Build(deps): Bump tqdm from 4.66.2 to 4.66.3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#868 - PATCH: Modify FSSource to output T2

Pull Request - State: closed - Opened by mgxd 10 months ago - 1 comment

#867 - STY: Apply assorted ruff/refurb rules

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago

#866 - MNT: Fix deprectation error in CI

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago

#864 - MNT: Address deprecation warning in CI

Pull Request - State: open - Opened by DimitriPapadopoulos 10 months ago - 3 comments

#863 - Build(deps): Bump idna from 3.6 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#862 - `niworkflows.utils.bids.collect_data` should drop unnecessary filters

Issue - State: open - Opened by oesteban 10 months ago
Labels: bug

#861 - Build(deps): Bump pillow from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#860 - MNT: Update environment definition files

Pull Request - State: closed - Opened by effigies 12 months ago - 1 comment

#859 - STY: Remove extraneous quotes

Pull Request - State: closed - Opened by DimitriPapadopoulos 12 months ago - 1 comment

#858 - ENH: Allow alternative `extensions` when creating a BIDS skeleton

Pull Request - State: closed - Opened by mgxd 12 months ago - 1 comment

#857 - ADD: Parsing for `space+cohort` structure

Pull Request - State: closed - Opened by mgxd 12 months ago - 3 comments

#856 - Handle file read/write race in parallel computing

Issue - State: open - Opened by psychelzh 12 months ago - 3 comments
Labels: enhancement, effort:high, impact:low

#854 - Migrate tools from fMRIPrep (post-fit-apply restructure) to Niworkflows

Issue - State: open - Opened by tsalo about 1 year ago
Labels: enhancement

#853 - Build(deps): Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#852 - Build(deps): Bump pillow from 10.1.0 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies, python

#851 - Build(deps): Bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#850 - Build(deps): Bump jinja2 from 3.1.2 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies, python

#849 - Build(deps): Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#848 - Build(deps): Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#847 - REL: 1.10.0

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#846 - Correctly use `ignore_initial_volumes` in `ConfoundsCorrelationPlot`

Pull Request - State: closed - Opened by tsalo about 1 year ago - 2 comments

#845 - Build(deps): Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#844 - FIX: Copy header to ensure mask is really aligned

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#843 - Add `ignore_initial_volumes` param to `ConfoundsCorrelationPlot`

Pull Request - State: closed - Opened by tsalo about 1 year ago - 4 comments

#842 - ENH: Upstream debugging hook from MRIQC

Pull Request - State: closed - Opened by oesteban about 1 year ago

#841 - ENH: Add MRIQC's custom multiproc runner that allows passing the pool

Pull Request - State: closed - Opened by oesteban about 1 year ago - 4 comments

#840 - Build(deps): Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#839 - Add ASL support

Pull Request - State: closed - Opened by tsalo about 1 year ago - 1 comment

#838 - Add ASL support

Issue - State: closed - Opened by tsalo about 1 year ago
Labels: enhancement

#837 - DOC: Fix typo in `refmap.py`

Pull Request - State: closed - Opened by acionca about 1 year ago

#836 - STY: Use f-strings where possible

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago - 1 comment

#835 - RF: Replace Convert3d with nitransforms in MCFLIRT2ITK

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment

#834 - MNT: update vendored docs files

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#833 - FIX: Add DWI to the default queries of BIDS querying

Pull Request - State: closed - Opened by oesteban over 1 year ago

#832 - ENH: Add hemi entity to transform path patterns

Pull Request - State: closed - Opened by effigies over 1 year ago

#831 - STY: Assorted refurb suggestions

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#830 - MNT: Test Python 3.12 support

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment

#829 - REL: 1.9.0

Pull Request - State: closed - Opened by effigies over 1 year ago - 2 comments

#828 - MNT: http:// → https://

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 2 comments

#827 - DOC: Fix typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#826 - FIX: Build config and CI

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: lts