nipreps/nireports issues and pull requests

#141 - chore: Add tox.ini, test minimum dependencies

Pull Request - State: open - Opened by effigies 12 days ago - 2 comments

#140 - build(deps): bump codecov/codecov-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: dependencies

#139 - Apply new ruff rules

Pull Request - State: open - Opened by DimitriPapadopoulos about 1 month ago - 1 comment

#138 - Allow figures in session folder

Pull Request - State: closed - Opened by tsalo about 1 month ago - 1 comment

#137 - Allow customizing carpet plot axis labels

Issue - State: open - Opened by jhlegarreta about 2 months ago
Labels: enhancement

#136 - DWI carpet plot assumes a single b0 volume

Issue - State: open - Opened by jhlegarreta about 2 months ago
Labels: bug

#135 - feat: Move SimpleShowMaskRPT from niworkflows

Pull Request - State: closed - Opened by effigies about 2 months ago - 2 comments

#134 - REL: 24.0.2

Pull Request - State: closed - Opened by oesteban 3 months ago

#133 - FIX: Remove all axes before fMRIPlot

Pull Request - State: closed - Opened by oesteban 3 months ago - 1 comment

#132 - REL: 24.0.0

Pull Request - State: closed - Opened by oesteban 3 months ago - 1 comment

#131 - FIX: Address memory issues and corruption in ``fMRIPlot``

Pull Request - State: closed - Opened by oesteban 3 months ago - 1 comment

#130 - BigPlot may have a memory leak

Issue - State: closed - Opened by oesteban 3 months ago
Labels: bug

#129 - Funky fMRIPlots with multiecho datasets

Issue - State: closed - Opened by oesteban 3 months ago - 2 comments
Labels: bug

#128 - Allow GIFs in reports

Pull Request - State: closed - Opened by tsalo 3 months ago - 6 comments

#127 - test: Numpy 2.0 compatibility

Pull Request - State: closed - Opened by effigies 3 months ago - 1 comment

#126 - ENH: Support PNGs and JPGs in reportlets

Pull Request - State: closed - Opened by tsalo 4 months ago - 4 comments

#125 - Support PNGs and JPGs in reportlets

Pull Request - State: closed - Opened by tsalo 4 months ago - 4 comments

#124 - Support PNG and JPEG figures in reports

Issue - State: closed - Opened by tsalo 4 months ago - 3 comments
Labels: enhancement

#123 - MAINT: Pacify ruff

Pull Request - State: closed - Opened by oesteban 5 months ago

#122 - ENH: Allow required value in reportlet configs.

Pull Request - State: open - Opened by rwblair 7 months ago - 1 comment

#121 - DOC: add a tutorial based on a group report I've developed

Pull Request - State: open - Opened by celprov 7 months ago - 2 comments

#120 - Plot physiological signals on top of the carpet plot

Issue - State: open - Opened by oesteban 7 months ago - 2 comments

#119 - ENH: Higher-level carpetplot tooling for DWI

Pull Request - State: closed - Opened by teresamg 7 months ago - 5 comments

#118 - ENH: Add raincloud plot capabilities

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 6 comments

#117 - FIX: Set max height and overflow css for qcrating widget

Pull Request - State: closed - Opened by rwblair 7 months ago

#116 - STYLE: Make coverage badge be last in README badge list

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#115 - STYLE: Fix style in `update_authors.py`

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 4 comments

#114 - STYLE: Transition to `ruff` for code formatting

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 4 comments

#113 - ENH: Add license badge to README

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#112 - ENH: Add PyPI badge to README

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#111 - ENH: Add CI badges to README

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#110 - build(deps): bump the actions-infrastructure group with 5 updates

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#109 - build(deps): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#108 - build(deps): bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#107 - build(deps): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#106 - build(deps): bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#105 - build(deps): bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#104 - RF: Consistently use matplotlib.colormaps in mpl namespace

Pull Request - State: closed - Opened by effigies 7 months ago - 2 comments

#103 - DOC: Fix `dwi` module function cross ref in docstring

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 7 comments

#102 - DOC: Misc documentation and style fixes

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#101 - ENH: Add DWI volume plot method

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 5 comments

#100 - ENH: Set the `seaborn` barplot `hue` property value

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 2 comments

#99 - STY: Apply ruff/flake8-implicit-str-concat rule ISC001

Pull Request - State: closed - Opened by DimitriPapadopoulos 7 months ago

#98 - MNT: Fix matplotlib.cm.get_cmap deprecation

Pull Request - State: closed - Opened by DimitriPapadopoulos 7 months ago

#97 - DOC: Update readthedocs and package's docs dependencies

Pull Request - State: closed - Opened by oesteban 7 months ago

#96 - ENH: Add gradient plot method

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 9 comments

#95 - tiny micro print on FMRI plot summary

Issue - State: open - Opened by dkp over 5 years ago - 1 comment
Labels: bug, help wanted

#94 - ICA component images do not load in functional report

Issue - State: closed - Opened by danlurie over 7 years ago - 10 comments
Labels: bug

#93 - Rating widget : make it scrollable

Issue - State: closed - Opened by celprov about 1 year ago
Labels: bug

#92 - Rating widget : modify selectable list of artifacts

Issue - State: open - Opened by celprov over 2 years ago - 1 comment
Labels: good first issue

#91 - Reportlet - Head-Motion+Eddy correction

Issue - State: open - Opened by oesteban over 3 years ago - 2 comments
Labels: effort: medium, good first issue, impact: high, new reportlet

#90 - Self-contained HTML

Issue - State: open - Opened by oesteban 9 months ago
Labels: enhancement

#89 - Plotting deprecation warning

Issue - State: closed - Opened by mgxd 9 months ago
Labels: effort: low, good first issue

#88 - FIX: change standardizing strategy of clean following FutureWarning

Pull Request - State: closed - Opened by celprov 12 months ago

#87 - REL: 23.2.0

Pull Request - State: closed - Opened by effigies 12 months ago - 1 comment

#86 - Do we need CircleCI for anything?

Issue - State: open - Opened by effigies 12 months ago - 1 comment

#85 - RF: Purge pkg_resources, add data loader

Pull Request - State: closed - Opened by effigies 12 months ago - 2 comments

#84 - FIX: fix AttributeError Xtick has no attribute label

Pull Request - State: closed - Opened by celprov 12 months ago - 6 comments

#83 - Add `ignore_initial_volumes` param to `ConfoundsCorrelationPlot`

Pull Request - State: closed - Opened by tsalo 12 months ago - 3 comments

#82 - ENH: Add session filtering to report generation

Pull Request - State: closed - Opened by mgxd 12 months ago - 1 comment

#81 - Mismatch between line and carpet plots in fMRIPlot

Issue - State: open - Opened by tsalo 12 months ago - 4 comments
Labels: bug

#80 - fix: assorted pyupgrade suggestions

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago

#79 - fix: typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago

#78 - Allow a notion of "mandatory" reportlet/section in the bootstrap configuration file

Issue - State: open - Opened by oesteban over 1 year ago
Labels: enhancement

#77 - ENH: Better SNR levels for representation in DWI heatmaps

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#76 - FIX: Calculation of aspect ratio of mosaics

Pull Request - State: closed - Opened by oesteban over 1 year ago - 2 comments

#75 - ENH: Add a new DWI heatmap for quality control

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#74 - ENH: Port basic report-capable interfaces from NiWorkflows

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#73 - FIX: Bugs discovered generating DWI reports

Pull Request - State: closed - Opened by oesteban over 1 year ago

#72 - ENH: Add a ``bval-<label>`` entity

Pull Request - State: closed - Opened by oesteban over 1 year ago

#71 - ENH: Finalize migration of reporting interfaces

Pull Request - State: closed - Opened by oesteban over 1 year ago - 2 comments

#70 - CI: Try older codecov orb

Pull Request - State: closed - Opened by effigies over 1 year ago - 6 comments

#69 - CI: Purge codecov Python package

Pull Request - State: closed - Opened by effigies over 1 year ago

#68 - FIX: Improve handling of reportlet style

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#67 - ENH: Allow CSS styling of reportlets in bootstrap file

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#66 - ENH: Improve handling of auth token by rating-widget

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#65 - ENH: Advanced metadata interpolation

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#64 - FIX: Plugin inclusion via main bootstrap file did not work

Pull Request - State: closed - Opened by oesteban over 1 year ago - 1 comment

#63 - DOC: Adds a docstring to the compose_view function.

Pull Request - State: closed - Opened by arokem over 1 year ago - 1 comment

#62 - ENH: BIDS filters and support plugins (incl. a rating widget as the example)

Pull Request - State: closed - Opened by oesteban over 1 year ago - 2 comments

#61 - Boilerplates: generate bibtex file with references on-the-fly

Issue - State: open - Opened by oesteban over 1 year ago
Labels: effort: high, enhancement, impact: medium, visual reports system

#60 - ENH: Allow different types of reportlets, not only BIDS-based

Pull Request - State: closed - Opened by oesteban over 1 year ago - 2 comments

#59 - ENH: Upgrade bootstrap to 5.0.2

Pull Request - State: closed - Opened by oesteban over 1 year ago

#58 - Add property to reportlets in the report specification YAML: width

Issue - State: closed - Opened by oesteban over 1 year ago
Labels: enhancement

#57 - Allow different reportlets "types"

Issue - State: closed - Opened by oesteban over 1 year ago
Labels: enhancement

#56 - Update bootstrapJS to 5.x

Issue - State: closed - Opened by oesteban over 1 year ago
Labels: enhancement

#55 - Assembler cannot apply filters (e.g., MRIQC needs to select single tasks/runs)

Issue - State: closed - Opened by oesteban over 1 year ago
Labels: bug

#54 - Port ``niworkflows.interfaces.reportlets``

Issue - State: closed - Opened by oesteban over 1 year ago
Labels: enhancement

#53 - Weird aspect ratio of some mosaic plots

Issue - State: closed - Opened by oesteban over 1 year ago - 8 comments
Labels: bug

#52 - ENH: Flexibilize views of ``plot_mosaic`` to render nonhuman imaging

Pull Request - State: closed - Opened by oesteban over 1 year ago - 7 comments

#51 - ENH: API refactor of Nipype interfaces

Pull Request - State: closed - Opened by oesteban over 1 year ago - 2 comments

#50 - ENH: Set up CI on CircleCI for artifact visualization

Pull Request - State: closed - Opened by esavary over 1 year ago - 1 comment

#49 - Fix: updated maintainers.md

Pull Request - State: closed - Opened by esavary over 1 year ago

#48 - ENH: Add Governance files

Pull Request - State: closed - Opened by esavary over 1 year ago - 1 comment

#47 - Set up a MAINTAINERS team & add GOVERNANCE files (``.maint/*`` et al.)

Issue - State: closed - Opened by oesteban over 1 year ago - 1 comment
Labels: enhancement

#46 - Merge nipype interfaces coming from niworkflows and mriqc?

Issue - State: closed - Opened by oesteban over 1 year ago - 2 comments
Labels: enhancement

#45 - Set up CI on CircleCI for artifact visualization

Issue - State: closed - Opened by oesteban almost 2 years ago - 1 comment
Labels: enhancement

#44 - MAINT: Migration of reportlets and interfaces from MRIQC

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#43 - Notebook wrapper does not work on Jupyter-lab

Issue - State: open - Opened by oesteban over 2 years ago

#42 - Fixing 32-bit Windows with Python 3.10 build

Pull Request - State: closed - Opened by ZviBaratz over 2 years ago - 4 comments
Labels: bug

GitHub / nipreps/nireports issues and pull requests