Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nipreps/nibabies issues and pull requests

#249 - ENH: Prioritize sbrefs when creating BOLD reference image

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 1 comment

#249 - ENH: Prioritize sbrefs when creating BOLD reference image

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 1 comment

#248 - docker: failed to register layer

Issue - State: closed - Opened by anikaguha1 almost 2 years ago - 2 comments
Labels: bug

#248 - docker: failed to register layer

Issue - State: closed - Opened by anikaguha1 almost 2 years ago - 2 comments
Labels: bug

#247 - Use SBRefs when available

Issue - State: closed - Opened by mgxd almost 2 years ago - 1 comment
Labels: enhancement

#247 - Use SBRefs when available

Issue - State: closed - Opened by mgxd almost 2 years ago - 1 comment
Labels: enhancement

#246 - FIX: Use the binarized output from the brain extraction

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#246 - FIX: Use the binarized output from the brain extraction

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#245 - BOLD brain mask derivatives ("desc-brain_mask.nii.gz") are not binarized

Issue - State: closed - Opened by madisoth almost 2 years ago
Labels: bug

#245 - BOLD brain mask derivatives ("desc-brain_mask.nii.gz") are not binarized

Issue - State: closed - Opened by madisoth almost 2 years ago
Labels: bug

#244 - CI: Fix docker credential error

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#243 - DOC: Add long description including background/significance

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#243 - DOC: Add long description including background/significance

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#242 - DOC: Advertise nipreps community pages, add section on contributions

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 1 comment

#242 - DOC: Advertise nipreps community pages, add section on contributions

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 1 comment

#241 - Add benchmark information

Issue - State: open - Opened by mgxd almost 2 years ago
Labels: enhancement

#241 - Add benchmark information

Issue - State: open - Opened by mgxd almost 2 years ago
Labels: enhancement

#240 - Link to nipreps organization website

Issue - State: closed - Opened by mgxd almost 2 years ago
Labels: enhancement

#240 - Link to nipreps organization website

Issue - State: closed - Opened by mgxd almost 2 years ago
Labels: enhancement

#239 - Add longer, more in-depth description

Issue - State: closed - Opened by mgxd almost 2 years ago
Labels: enhancement

#239 - Add longer, more in-depth description

Issue - State: closed - Opened by mgxd almost 2 years ago
Labels: enhancement

#238 - Provide test data

Issue - State: open - Opened by mgxd almost 2 years ago
Labels: enhancement

#238 - Provide test data

Issue - State: open - Opened by mgxd almost 2 years ago
Labels: enhancement

#237 - Add output description

Issue - State: open - Opened by mgxd almost 2 years ago
Labels: enhancement

#236 - Create contributor guide

Issue - State: closed - Opened by mgxd about 2 years ago
Labels: enhancement

#236 - Create contributor guide

Issue - State: closed - Opened by mgxd about 2 years ago
Labels: enhancement

#235 - ENH: Add option to exclude projecting high variance voxels to surface

Pull Request - State: closed - Opened by madisoth about 2 years ago - 3 comments
Labels: blocked

#234 - REL: 22.1.3

Pull Request - State: closed - Opened by mgxd about 2 years ago

#234 - REL: 22.1.3

Pull Request - State: closed - Opened by mgxd about 2 years ago

#233 - FIX: Field name for multi-echo fieldmap correction

Pull Request - State: closed - Opened by mgxd about 2 years ago - 2 comments

#233 - FIX: Field name for multi-echo fieldmap correction

Pull Request - State: closed - Opened by mgxd about 2 years ago - 2 comments

#232 - Error running multiecho data with fieldmap

Issue - State: closed - Opened by madisoth about 2 years ago
Labels: bug

#232 - Error running multiecho data with fieldmap

Issue - State: closed - Opened by madisoth about 2 years ago
Labels: bug

#231 - FIX: Add missing shared object for `infant_recon_all`

Pull Request - State: closed - Opened by mgxd about 2 years ago

#231 - FIX: Add missing shared object for `infant_recon_all`

Pull Request - State: closed - Opened by mgxd about 2 years ago

#230 - RF: migas updates

Pull Request - State: closed - Opened by mgxd about 2 years ago - 1 comment

#230 - RF: migas updates

Pull Request - State: closed - Opened by mgxd about 2 years ago - 1 comment

#229 - ENH: Add interface for reorienting images

Pull Request - State: closed - Opened by mgxd about 2 years ago - 1 comment

#229 - ENH: Add interface for reorienting images

Pull Request - State: closed - Opened by mgxd about 2 years ago - 1 comment

#228 - Cifti subcortical BOLD is not conformed to LAS as in fMRIPrep

Issue - State: closed - Opened by madisoth about 2 years ago - 1 comment
Labels: bug

#228 - Cifti subcortical BOLD is not conformed to LAS as in fMRIPrep

Issue - State: closed - Opened by madisoth about 2 years ago - 1 comment
Labels: bug

#227 - NodeExecutionError when running nibabies on subject without external segmentation

Issue - State: closed - Opened by lundq163 about 2 years ago - 5 comments
Labels: bug

#226 - ENH: Add migas telemetry to nibabies

Pull Request - State: closed - Opened by mgxd about 2 years ago

#226 - ENH: Add migas telemetry to nibabies

Pull Request - State: closed - Opened by mgxd about 2 years ago

#225 - *slight* misalignment of surface to native T1w even after correct transform is applied

Issue - State: closed - Opened by ericfeczko over 2 years ago - 3 comments
Labels: bug

#225 - *slight* misalignment of surface to native T1w even after correct transform is applied

Issue - State: closed - Opened by ericfeczko over 2 years ago - 3 comments
Labels: bug

#224 - MAINT: Update package metadata

Pull Request - State: closed - Opened by mgxd over 2 years ago

#224 - MAINT: Update package metadata

Pull Request - State: closed - Opened by mgxd over 2 years ago

#223 - FIX: FSNative <-> anatomical transforms

Pull Request - State: closed - Opened by mgxd over 2 years ago

#223 - FIX: FSNative <-> anatomical transforms

Pull Request - State: closed - Opened by mgxd over 2 years ago

#222 - Anat surface outputs not aligned to subject-space T1w

Issue - State: closed - Opened by madisoth over 2 years ago - 1 comment
Labels: bug

#222 - Anat surface outputs not aligned to subject-space T1w

Issue - State: closed - Opened by madisoth over 2 years ago - 1 comment
Labels: bug

#221 - MAINT: Bump container python to 3.9

Pull Request - State: closed - Opened by mgxd over 2 years ago

#221 - MAINT: Bump container python to 3.9

Pull Request - State: closed - Opened by mgxd over 2 years ago

#220 - FIX: Vastly improve multi-echo handling

Pull Request - State: closed - Opened by mgxd over 2 years ago

#220 - FIX: Vastly improve multi-echo handling

Pull Request - State: closed - Opened by mgxd over 2 years ago

#219 - RF/ENH: Rework workflow generation

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#219 - RF/ENH: Rework workflow generation

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#218 - Synchronize carpetplot with fMRIPrep

Issue - State: open - Opened by mgxd over 2 years ago
Labels: enhancement

#218 - Synchronize carpetplot with fMRIPrep

Issue - State: open - Opened by mgxd over 2 years ago
Labels: enhancement

#217 - MAINT: Force all git-annex dependencies to be installed

Pull Request - State: closed - Opened by mgxd over 2 years ago

#216 - PIN: Cap scipy for python 3.7

Pull Request - State: closed - Opened by mgxd over 2 years ago

#216 - PIN: Cap scipy for python 3.7

Pull Request - State: closed - Opened by mgxd over 2 years ago

#215 - Add regression test for `--cifti-output`

Issue - State: open - Opened by mgxd over 2 years ago - 1 comment
Labels: enhancement

#215 - Add regression test for `--cifti-output`

Issue - State: open - Opened by mgxd over 2 years ago - 1 comment
Labels: enhancement

#214 - ENH: Add option to use `recon-all` instead of `infant_recon_all`

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#214 - ENH: Add option to use `recon-all` instead of `infant_recon_all`

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#213 - Add option to force standard `recon-all` over `infant_recon_all`

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement

#213 - Add option to force standard `recon-all` over `infant_recon_all`

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement

#212 - FIX: `--cifti-output` missing required space

Pull Request - State: closed - Opened by mgxd over 2 years ago - 9 comments

#212 - FIX: `--cifti-output` missing required space

Pull Request - State: closed - Opened by mgxd over 2 years ago - 9 comments

#210 - optimal combination of multi-echo data as done in fMRIprep

Issue - State: closed - Opened by moser297 over 2 years ago - 5 comments
Labels: enhancement

#210 - optimal combination of multi-echo data as done in fMRIprep

Issue - State: closed - Opened by moser297 over 2 years ago - 5 comments
Labels: enhancement

#209 - CI: Simplify circle config by reusing blocks

Pull Request - State: closed - Opened by mgxd over 2 years ago

#208 - FIX: Bump niworkflows, ensure consistent `collect_data` signature

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#208 - FIX: Bump niworkflows, ensure consistent `collect_data` signature

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#207 - rel(22.0.1): update changes, bump niworkflows

Pull Request - State: closed - Opened by mgxd over 2 years ago

#207 - rel(22.0.1): update changes, bump niworkflows

Pull Request - State: closed - Opened by mgxd over 2 years ago

#206 - STY: Bump style dependencies, run `isort` on repo

Pull Request - State: closed - Opened by mgxd over 2 years ago

#206 - STY: Bump style dependencies, run `isort` on repo

Pull Request - State: closed - Opened by mgxd over 2 years ago

#205 - ENH: Improve fieldmap support

Pull Request - State: closed - Opened by mgxd over 2 years ago

#205 - ENH: Improve fieldmap support

Pull Request - State: closed - Opened by mgxd over 2 years ago

#204 - Add `--topup-max-vols` flag

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement

#204 - Add `--topup-max-vols` flag

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement

#203 - CI: Migrate to token auth when uploading to pypi

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#202 - ENH: Add major/minor versions to base workflow name

Pull Request - State: closed - Opened by mgxd over 2 years ago

#202 - ENH: Add major/minor versions to base workflow name

Pull Request - State: closed - Opened by mgxd over 2 years ago

#201 - Add versioning to main workflow name

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement, help wanted

#201 - Add versioning to main workflow name

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement, help wanted

#200 - FIX: Clean up generated boilerplate

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#200 - FIX: Clean up generated boilerplate

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment

#199 - RuntimeError: 2 raised. Re-raising first.

Issue - State: closed - Opened by cfilippi4 over 2 years ago - 2 comments

#199 - RuntimeError: 2 raised. Re-raising first.

Issue - State: closed - Opened by cfilippi4 over 2 years ago - 2 comments

#198 - Choose Head Size Based off of age of Participant

Issue - State: open - Opened by audreymhoughton over 2 years ago - 3 comments
Labels: enhancement

#198 - Choose Head Size Based off of age of Participant

Issue - State: open - Opened by audreymhoughton over 2 years ago - 3 comments
Labels: enhancement

#194 - Verify boilerplate is accurate when using `--derivatives`

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement

#194 - Verify boilerplate is accurate when using `--derivatives`

Issue - State: closed - Opened by mgxd over 2 years ago
Labels: enhancement

#193 - ENH: Treat session as first-class identifier

Pull Request - State: closed - Opened by mgxd over 2 years ago - 1 comment
Labels: requires more testing