Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nipreps/nibabies issues and pull requests

#315 - Build(deps): Bump urllib3 from 2.0.3 to 2.0.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#314 - DKR: Add bc for FreeSurfer recons

Pull Request - State: closed - Opened by mgxd about 1 year ago - 1 comment

#314 - DKR: Add bc for FreeSurfer recons

Pull Request - State: closed - Opened by mgxd about 1 year ago - 1 comment

#313 - ENH: Add MSMSulc

Pull Request - State: open - Opened by mgxd about 1 year ago - 1 comment

#313 - ENH: Add MSMSulc

Pull Request - State: open - Opened by mgxd about 1 year ago

#312 - infantFS recon error due to "bc" not found

Issue - State: closed - Opened by madisoth about 1 year ago
Labels: bug

#311 - Beef up documentation

Issue - State: open - Opened by mgxd about 1 year ago
Labels: documentation, enhancement

#311 - Beef up documentation

Issue - State: open - Opened by mgxd about 1 year ago
Labels: documentation, enhancement

#310 - CI: Fix output order

Pull Request - State: closed - Opened by mgxd about 1 year ago - 3 comments

#310 - CI: Fix output order

Pull Request - State: closed - Opened by mgxd about 1 year ago - 3 comments

#308 - Build(deps): Bump tornado from 6.3.2 to 6.3.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#307 - Allow skullstripped inputs

Issue - State: open - Opened by mgxd about 1 year ago

#305 - ENH+RF: Allow precomputed derivatives in T1w or T2w space

Pull Request - State: closed - Opened by mgxd about 1 year ago - 2 comments

#304 - Mismatch in image and mask size due to change in pixel dimensions during t1w_template_wf

Issue - State: open - Opened by moser297 about 1 year ago - 2 comments
Labels: bug

#304 - Mismatch in image and mask size due to change in pixel dimensions during t1w_template_wf

Issue - State: closed - Opened by moser297 about 1 year ago - 3 comments
Labels: bug

#303 - Build(deps): Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#303 - Build(deps): Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#302 - RF: Update Docker build

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#302 - RF: Update Docker build

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#301 - FIX: Goodvoxel projection

Pull Request - State: closed - Opened by mgxd over 1 year ago

#301 - FIX: Goodvoxel projection

Pull Request - State: closed - Opened by mgxd over 1 year ago

#300 - FIX: "Goodvoxels" projection

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#300 - FIX: "Goodvoxels" projection

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#298 - FIX: restore cifti medial wall masking, subcortical volume LAS reorientation

Pull Request - State: closed - Opened by madisoth over 1 year ago - 1 comment

#298 - FIX: restore cifti medial wall masking, subcortical volume LAS reorientation

Pull Request - State: closed - Opened by madisoth over 1 year ago - 1 comment

#297 - mcribs surfaces misaligned to anat after fix_surfs node

Issue - State: closed - Opened by madisoth over 1 year ago - 1 comment
Labels: bug

#297 - mcribs surfaces misaligned to anat after fix_surfs node

Issue - State: closed - Opened by madisoth over 1 year ago - 1 comment
Labels: bug

#295 - Dilated the BOLD mask input to t2smap

Issue - State: closed - Opened by madisoth over 1 year ago
Labels: enhancement

#294 - Add `auto` option to `--surface-recon-method`

Issue - State: open - Opened by mgxd over 1 year ago - 1 comment
Labels: enhancement

#294 - Add `auto` option to `--surface-recon-method`

Issue - State: open - Opened by mgxd over 1 year ago - 1 comment
Labels: enhancement

#293 - Allow ingress of segmentations in different spaces through --derivatives flag

Issue - State: closed - Opened by hough129 over 1 year ago
Labels: enhancement

#293 - Allow ingress of segmentations in different spaces through --derivatives flag

Issue - State: open - Opened by hough129 over 1 year ago
Labels: enhancement

#292 - FIX: Remove duplicated connections

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#291 - FIX: Ensure age from sessions file is not overriden

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#291 - FIX: Ensure age from sessions file is not overriden

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#290 - MNT: Drop templateflow patches after smriprep changes

Pull Request - State: closed - Opened by mgxd over 1 year ago

#289 - CI: Fix dev image name

Pull Request - State: closed - Opened by mgxd over 1 year ago

#288 - Alter FreeSurfer subjects to include session labels

Issue - State: closed - Opened by mgxd over 1 year ago - 1 comment
Labels: enhancement

#287 - ENH: Extract participant ages from BIDS sources

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#286 - RF: Anatomical processing

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#285 - DEP: Test with latest preps

Pull Request - State: closed - Opened by mgxd over 1 year ago

#284 - FIX: Estimate free memory with available, not free

Pull Request - State: closed - Opened by mgxd over 1 year ago

#283 - ENH: Add M-CRIB-S surface processing

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#282 - MAINT: Purge removed codecov python package

Pull Request - State: closed - Opened by mgxd over 1 year ago

#281 - FIX: Create FreeSurfer directories

Pull Request - State: closed - Opened by mgxd over 1 year ago

#280 - ENH: Testing MCRIBS integration

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#280 - ENH: Testing MCRIBS integration

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#278 - ENH: Add option to exclude projecting high variance voxels to surface

Pull Request - State: closed - Opened by madisoth over 1 year ago - 1 comment

#277 - ENH: Add method to generate config file

Pull Request - State: closed - Opened by mgxd over 1 year ago

#276 - ENH: Add MIRTK to docker container

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#276 - ENH: Add MIRTK to docker container

Pull Request - State: closed - Opened by mgxd over 1 year ago - 1 comment

#275 - MNT: Upgrade Docker base, c3d

Pull Request - State: closed - Opened by mgxd over 1 year ago

#275 - MNT: Upgrade Docker base, c3d

Pull Request - State: closed - Opened by mgxd over 1 year ago

#274 - Surface Morphometrics in fsLR 32k space

Issue - State: closed - Opened by hough129 over 1 year ago - 1 comment
Labels: enhancement

#273 - REL: 23.0.0

Pull Request - State: closed - Opened by mgxd over 1 year ago

#273 - REL: 23.0.0

Pull Request - State: closed - Opened by mgxd over 1 year ago

#272 - FIX: Remove unused ANTs parameter that was removed in 2.4.1

Pull Request - State: closed - Opened by effigies over 1 year ago

#272 - FIX: Remove unused ANTs parameter that was removed in 2.4.1

Pull Request - State: open - Opened by effigies over 1 year ago

#271 - ENH: Add preprocessed T2w volume to outputs

Pull Request - State: closed - Opened by madisoth over 1 year ago

#271 - ENH: Add preprocessed T2w volume to outputs

Pull Request - State: closed - Opened by madisoth over 1 year ago

#270 - Remap labels from FreeSurfer aseg to MCRIB

Pull Request - State: closed - Opened by madisoth over 1 year ago

#270 - Remap labels from FreeSurfer aseg to MCRIB

Pull Request - State: closed - Opened by madisoth over 1 year ago

#269 - MIRTK integration

Pull Request - State: closed - Opened by effigies over 1 year ago - 3 comments

#268 - ENH: Runwise bold reference generation

Pull Request - State: closed - Opened by mgxd over 1 year ago

#268 - ENH: Runwise bold reference generation

Pull Request - State: closed - Opened by mgxd over 1 year ago

#267 - CI: Bump convenience images, limit datalad

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#267 - CI: Bump convenience images, limit datalad

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#266 - MAINT: Rotate CircleCI secrets and setup up org-level context

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#265 - MAINT: Drop versioneer for hatch backend, fully embrace pyproject.toml

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 2 comments

#265 - MAINT: Drop versioneer for hatch backend, fully embrace pyproject.toml

Pull Request - State: closed - Opened by mgxd almost 2 years ago - 2 comments

#264 - FIX: Remove legacy CIFTI variant support

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#264 - FIX: Remove legacy CIFTI variant support

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#263 - BIDSConflictingValuesError for entity "space" in CIFTI func derivatives

Issue - State: closed - Opened by madisoth almost 2 years ago
Labels: bug

#262 - ENH: Remap segmentation volume labels from aseg to MCRIBS-compatible format

Pull Request - State: closed - Opened by madisoth almost 2 years ago - 2 comments

#262 - ENH: Remap segmentation volume labels from aseg to MCRIBS-compatible format

Pull Request - State: closed - Opened by madisoth almost 2 years ago - 2 comments

#260 - DEP: Pin sdcflows to minor series

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#260 - DEP: Pin sdcflows to minor series

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#259 - ENH: Anat wf saves T2 volume in T1 space as derivative output file

Pull Request - State: closed - Opened by GregConan almost 2 years ago - 1 comment

#258 - FIX: Remove cortex masking during vol2surf sampling

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#258 - FIX: Remove cortex masking during vol2surf sampling

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#257 - ENH: Improve migas telemetry

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#257 - ENH: Improve migas telemetry

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#256 - CI: GitHub actions update

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#255 - ENH: Add morphometric outputs

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#255 - ENH: Add morphometric outputs

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#254 - Distortion corrected images look distorted in the opposite direction (AP for PA acquisition)

Issue - State: open - Opened by moser297 almost 2 years ago
Labels: bug, in-progress

#254 - Distortion corrected images look distorted in the opposite direction (AP for PA acquisition)

Issue - State: closed - Opened by moser297 almost 2 years ago - 2 comments
Labels: bug

#253 - Change in reference frame for motion correction in single echo and multi echo data

Issue - State: closed - Opened by moser297 almost 2 years ago
Labels: enhancement

#253 - Change in reference frame for motion correction in single echo and multi echo data

Issue - State: closed - Opened by moser297 almost 2 years ago
Labels: enhancement

#252 - ENH: Output T2star maps for multiecho data

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#252 - ENH: Output T2star maps for multiecho data

Pull Request - State: closed - Opened by mgxd almost 2 years ago

#251 - Output a label volume of the resampled-to-atlas subcortical ROIs

Issue - State: open - Opened by madisoth almost 2 years ago
Labels: enhancement

#251 - Output a label volume of the resampled-to-atlas subcortical ROIs

Issue - State: open - Opened by madisoth almost 2 years ago
Labels: enhancement

#250 - ENH: Add ReconNeonatalCortex interface

Pull Request - State: closed - Opened by effigies almost 2 years ago - 3 comments
Labels: enhancement

#250 - ENH: Add ReconNeonatalCortex interface

Pull Request - State: closed - Opened by effigies almost 2 years ago - 3 comments
Labels: enhancement