Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/nibabies issues and pull requests
#405 - REL: 24.1.0
Pull Request -
State: open - Opened by mgxd 4 days ago
- 1 comment
#404 - MAINT: Automate testing with tox
Pull Request -
State: closed - Opened by mgxd 4 days ago
- 1 comment
#403 - FIX: Readd boilerplate, errors to report
Pull Request -
State: closed - Opened by mgxd 6 days ago
#402 - ENH: Add age to session report
Pull Request -
State: closed - Opened by mgxd 9 days ago
#401 - MAINT: Port over parser and tests from fmriprep
Pull Request -
State: closed - Opened by mgxd 9 days ago
#400 - FIX: Do not force masking of anatomicals when using `--derivatives`
Pull Request -
State: closed - Opened by mgxd 10 days ago
#399 - FIX: MCRIBS auto surface reconstruction logic
Pull Request -
State: closed - Opened by mgxd 10 days ago
#398 - FIX Update bids.py
Pull Request -
State: closed - Opened by erikglee 11 days ago
#397 - T1 and T2 preproc anatomical derivatives are skull stripped for mcribs and infantfs reconstruction methods
Issue -
State: closed - Opened by lundq163 16 days ago
- 1 comment
Labels: bug
#396 - MAINT: Revisit warnings filter
Pull Request -
State: closed - Opened by mgxd 19 days ago
#395 - FIX/ENH: Improvements to age parsing
Pull Request -
State: closed - Opened by mgxd 23 days ago
- 1 comment
#394 - [ENH] Age float change + handling of sessions.tsv ages
Pull Request -
State: closed - Opened by erikglee 24 days ago
- 2 comments
#393 - SyN SDC incomplete
Issue -
State: open - Opened by mgxd 26 days ago
- 1 comment
Labels: bug
#392 - Errors may be present in "successful" runs
Issue -
State: open - Opened by mgxd 27 days ago
Labels: bug
#392 - Errors may be present in "successful" runs
Issue -
State: open - Opened by mgxd 27 days ago
Labels: bug
#389 - FIX: Gracefully handle longitudinal/long format participants TSV
Pull Request -
State: closed - Opened by scott-huberty 30 days ago
- 9 comments
#388 - Issue finding age in months from participants.tsv for v24.0.0
Issue -
State: closed - Opened by lundq163 about 1 month ago
- 6 comments
Labels: bug
#386 - docs: reformat abbreviations
Pull Request -
State: closed - Opened by mgxd about 1 month ago
#385 - FIX: Add missing me-t2s-fit-method option
Pull Request -
State: closed - Opened by mgxd about 1 month ago
#383 - DOC: First documentation pass
Pull Request -
State: closed - Opened by mgxd about 1 month ago
#383 - DOC: First documentation pass
Pull Request -
State: closed - Opened by mgxd about 1 month ago
#382 - FIX: Select reference resolution based on grayordinates
Pull Request -
State: closed - Opened by mgxd about 1 month ago
#381 - FIX: Ensure 2mm template is added when running CIFTI
Pull Request -
State: closed - Opened by mgxd about 1 month ago
- 2 comments
#380 - bold_MNIInfant_wf uses res-1 (1mm) template as target for BOLD resampling
Issue -
State: closed - Opened by madisoth about 2 months ago
Labels: bug
#380 - bold_MNIInfant_wf uses res-1 (1mm) template as target for BOLD resampling
Issue -
State: open - Opened by madisoth about 2 months ago
Labels: bug
#379 - CI: Fix smoke tests
Pull Request -
State: closed - Opened by mgxd about 2 months ago
#379 - CI: Fix smoke tests
Pull Request -
State: closed - Opened by mgxd about 2 months ago
#378 - More tests
Issue -
State: open - Opened by scott-huberty about 2 months ago
- 3 comments
Labels: enhancement
#378 - More tests
Issue -
State: open - Opened by scott-huberty about 2 months ago
- 3 comments
Labels: enhancement
#377 - FIX: Do not require mniinfant xfm if no cifti
Pull Request -
State: closed - Opened by mgxd about 2 months ago
- 1 comment
#376 - ENH: Additional support for age parsing
Pull Request -
State: open - Opened by mgxd about 2 months ago
#375 - 24.0.0rc fails with `'MNIInfant not found in SpatialReferences` if ``cifti-output`` flag not used
Issue -
State: closed - Opened by scott-huberty 2 months ago
- 4 comments
Labels: bug
#375 - 24.0.0rc fails with `'MNIInfant not found in SpatialReferences` if ``cifti-output`` flag not used
Issue -
State: closed - Opened by scott-huberty 2 months ago
- 4 comments
Labels: bug
#374 - Chore(deps): Bump scikit-learn from 1.4.2 to 1.5.0
Pull Request -
State: open - Opened by dependabot[bot] 2 months ago
Labels: dependencies
#374 - Chore(deps): Bump scikit-learn from 1.4.2 to 1.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies
#373 - FIX: swap out remaining `load_resources` cruft with `acres` `load`
Pull Request -
State: closed - Opened by scott-huberty 2 months ago
- 5 comments
#373 - FIX: swap out remaining `load_resources` cruft with `acres` `load`
Pull Request -
State: closed - Opened by scott-huberty 2 months ago
- 5 comments
#372 - `unstable` docker tag is lagging behind Nibabies development version
Issue -
State: open - Opened by scott-huberty 2 months ago
#372 - `unstable` docker tag is lagging behind Nibabies development version
Issue -
State: closed - Opened by scott-huberty 2 months ago
- 2 comments
#370 - REL: 24.0.0rc0
Pull Request -
State: closed - Opened by mgxd 2 months ago
#370 - REL: 24.0.0rc0
Pull Request -
State: closed - Opened by mgxd 2 months ago
#369 - If spherical registration not found, include the expected directory in the error message
Pull Request -
State: open - Opened by scott-huberty 2 months ago
- 1 comment
#369 - If spherical registration not found, include the expected directory in the error message
Pull Request -
State: open - Opened by scott-huberty 2 months ago
- 1 comment
#368 - Add `space-fsaverage` to `sphere_reg` output files
Pull Request -
State: closed - Opened by tsalo 2 months ago
#368 - Add `space-fsaverage` to `sphere_reg` output files
Pull Request -
State: closed - Opened by tsalo 2 months ago
#367 - Write out fsnative surface files registered to dhcpAsym/fsLR space
Issue -
State: open - Opened by tsalo 2 months ago
Labels: enhancement
#366 - Add `space-fsaverage` to `desc-reg` sphere files without space entity
Issue -
State: closed - Opened by tsalo 2 months ago
- 2 comments
Labels: enhancement
#366 - Add `space-fsaverage` to `desc-reg` sphere files without space entity
Issue -
State: open - Opened by tsalo 2 months ago
- 2 comments
Labels: enhancement
#365 - FIX: nest pathlib import in fix_multi_source_name
Pull Request -
State: closed - Opened by scott-huberty 4 months ago
- 1 comment
#365 - FIX: nest pathlib import in fix_multi_source_name
Pull Request -
State: closed - Opened by scott-huberty 4 months ago
- 1 comment
#364 - Failure using nibabies: Image and mask affines are not similar enough
Issue -
State: closed - Opened by kellyhi08 4 months ago
- 8 comments
Labels: bug
#364 - Failure using nibabies: Image and mask affines are not similar enough
Issue -
State: open - Opened by kellyhi08 4 months ago
- 7 comments
Labels: bug
#363 - mri_coreg crash
Issue -
State: closed - Opened by scott-huberty 5 months ago
- 3 comments
Labels: bug
#362 - Build(deps): Bump jinja2 from 3.0.1 to 3.1.4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#361 - Build(deps): Bump tqdm from 4.65.0 to 4.66.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 2 comments
Labels: dependencies
#360 - RF: Move to fit/apply workflow
Pull Request -
State: closed - Opened by mgxd 5 months ago
- 1 comment
Labels: in-progress
#358 - Build(deps): Bump idna from 3.4 to 3.7
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#357 - FEAT: Save CIFTI subcortical volumes
Pull Request -
State: closed - Opened by mgxd 6 months ago
- 2 comments
#356 - FIX: Use tissue segmentations for FS recon-all
Pull Request -
State: open - Opened by mgxd 6 months ago
- 1 comment
#355 - Build(deps): Bump pillow from 10.0.1 to 10.3.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 2 comments
Labels: dependencies
#355 - Build(deps): Bump pillow from 10.0.1 to 10.3.0
Pull Request -
State: open - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#354 - Cant get func - cifti outputs
Issue -
State: closed - Opened by nbustos 6 months ago
- 4 comments
Labels: bug
#353 - FIX: Avoid retrieving multiple templates from latest TF
Pull Request -
State: closed - Opened by mgxd 6 months ago
- 1 comment
#353 - FIX: Avoid retrieving multiple templates from latest TF
Pull Request -
State: closed - Opened by mgxd 6 months ago
- 1 comment
#352 - Warnings generated by `warnings.warn` are not shown in the terminal output (?)
Issue -
State: closed - Opened by scott-huberty 7 months ago
- 4 comments
Labels: bug
#351 - ENH: better repr for Derivatives class
Pull Request -
State: closed - Opened by scott-huberty 7 months ago
- 1 comment
#350 - HTML report folder structure does not work for ongoing longitudinal out of the box
Issue -
State: open - Opened by tjhendrickson 7 months ago
- 3 comments
Labels: bug
#349 - Failure when combining confounds
Issue -
State: open - Opened by mgxd 7 months ago
Labels: bug
#348 - Proposed change to the __repr__ method of the Derivatives class
Issue -
State: closed - Opened by scott-huberty 7 months ago
- 1 comment
Labels: enhancement
#347 - FIX: Raise informative error if no t1w or t2w found
Pull Request -
State: closed - Opened by scott-huberty 8 months ago
- 2 comments
#346 - Use symmetric dhcp templates
Issue -
State: open - Opened by mgxd 8 months ago
Labels: enhancement
#345 - Replace `resource_filename` with `load_data`
Pull Request -
State: closed - Opened by tsalo 8 months ago
- 2 comments
#344 - Carpet plots for func runs in .html report
Issue -
State: closed - Opened by ajdneuro 8 months ago
- 2 comments
Labels: bug
#343 - "'resource_filename' is not defined" error on multi-echo dataset
Issue -
State: closed - Opened by tsalo 8 months ago
- 1 comment
Labels: bug
#342 - FIX: Easier pyenv usage
Pull Request -
State: closed - Opened by mgxd 8 months ago
- 1 comment
#341 - Build(deps): Bump pillow from 10.0.1 to 10.2.0
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies
#340 - Build(deps): Bump fonttools from 4.40.0 to 4.43.0
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#339 - Build(deps): Bump jinja2 from 3.0.1 to 3.1.3
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies
#338 - DOC: Use correct argument flag
Pull Request -
State: closed - Opened by mgxd 8 months ago
#337 - MAINT: Raise minimum to 3.10, bump actions
Pull Request -
State: closed - Opened by mgxd 8 months ago
- 1 comment
#336 - FIX: Catch nonexistent derivatives, clean up subworkflow logic
Pull Request -
State: closed - Opened by mgxd 8 months ago
#335 - Verify `derivatives` exist
Issue -
State: closed - Opened by mgxd 8 months ago
Labels: bug
#334 - Use fsLR reg sphere for MCRIBS morphometrics resampling
Pull Request -
State: closed - Opened by madisoth 9 months ago
- 1 comment
#333 - FIX: Multiple T2ws, coerce reference to string
Pull Request -
State: closed - Opened by mgxd 9 months ago
- 1 comment
#332 - nibabies fails with multiple T2 images
Issue -
State: closed - Opened by chaselgrove 10 months ago
- 2 comments
Labels: bug
#331 - Argument order matters to nibabies-wrapper
Issue -
State: open - Opened by chaselgrove 10 months ago
Labels: bug
#329 - FIX: Clean up MCRIBS outputs
Pull Request -
State: closed - Opened by mgxd 10 months ago
- 1 comment
#328 - ENH: Use nireports report generation
Pull Request -
State: closed - Opened by mgxd 10 months ago
- 1 comment
#327 - Use correct xfm to resample tedana t2star map to std
Pull Request -
State: closed - Opened by madisoth 10 months ago
- 1 comment
#326 - chore: update to latest migas api
Pull Request -
State: closed - Opened by mgxd 10 months ago
#324 - REL: 23.1.0
Pull Request -
State: closed - Opened by mgxd 11 months ago
- 4 comments
#323 - FIX: Connect derivatives mask to mcribs recon
Pull Request -
State: closed - Opened by mgxd 11 months ago
- 1 comment
#322 - DOC: Update `--derivatives` FAQ
Pull Request -
State: closed - Opened by mgxd 11 months ago
#321 - 23.1.0 release candidate 1 version throw errors about can not find precomputed segmentation while using --surface-recon-method mcribs
Issue -
State: closed - Opened by yanbin-niu 11 months ago
- 1 comment
Labels: bug
#320 - T2* map not properly scaled to 2mm MNI
Issue -
State: closed - Opened by moser297 11 months ago
- 2 comments
Labels: bug
#319 - Build(deps): Bump urllib3 from 2.0.3 to 2.0.7
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
- 1 comment
Labels: dependencies
#318 - FIX: Py2 compatibility
Pull Request -
State: closed - Opened by mgxd about 1 year ago
- 1 comment
#317 - Build(deps): Bump pillow from 9.5.0 to 10.0.1
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#317 - Build(deps): Bump pillow from 9.5.0 to 10.0.1
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#316 - ENH: Add separate workflow to run with a single anatomical
Pull Request -
State: closed - Opened by mgxd about 1 year ago
- 2 comments