Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/fmriprep issues and pull requests
#2960 - What does the 'sloppy' flag do?
Issue -
State: closed - Opened by NickESouter over 1 year ago
- 4 comments
Labels: documentation
#2959 - ENH: Resample morphometrics to fsLR dscalar CIFTI-2 files if `--cifti-output` is used
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#2958 - codespell: config, action + some typo fixups
Pull Request -
State: closed - Opened by yarikoptic over 1 year ago
#2958 - codespell: config, action + some typo fixups
Pull Request -
State: closed - Opened by yarikoptic over 1 year ago
#2957 - CI: Minor updates to CircleCI config to improve resilience
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2957 - CI: Minor updates to CircleCI config to improve resilience
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2956 - ENH: Add option to exclude projecting high variance voxels to surface (update of #2855)
Pull Request -
State: closed - Opened by madisoth over 1 year ago
- 6 comments
#2955 - Surface Morphometrics in fsLR 32k space
Issue -
State: closed - Opened by hough129 over 1 year ago
#2954 - TEST: Verify nipreps/niworkflows#780 on fMRIPrep
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2953 - ENH: Add option to exclude projecting high variance voxels to surface
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2953 - ENH: Add option to exclude projecting high variance voxels to surface
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2952 - Using inversion recovery image when T1w is not available
Issue -
State: closed - Opened by manzouri over 1 year ago
- 2 comments
#2952 - Using inversion recovery image when T1w is not available
Issue -
State: closed - Opened by manzouri over 1 year ago
- 2 comments
#2950 - DOC: update the description of the carpetplot in the sample report
Pull Request -
State: closed - Opened by celprov over 1 year ago
- 2 comments
#2950 - DOC: update the description of the carpetplot in the sample report
Pull Request -
State: closed - Opened by celprov over 1 year ago
- 2 comments
#2949 - NetworkX version issue
Issue -
State: closed - Opened by sanosenx86 over 1 year ago
- 1 comment
Labels: bug
#2949 - NetworkX version issue
Issue -
State: closed - Opened by sanosenx86 over 1 year ago
- 1 comment
Labels: bug
#2948 - Odd ghosting in coreg, dark sdc images, bad roi & carpet plots
Issue -
State: closed - Opened by athenahowell over 1 year ago
- 5 comments
Labels: bug
#2947 - Fieldmaps causing fMRIprep to get crash
Issue -
State: open - Opened by NickESouter over 1 year ago
- 18 comments
Labels: bug
#2947 - Fieldmaps causing fMRIprep to get crash
Issue -
State: closed - Opened by NickESouter over 1 year ago
- 20 comments
Labels: bug
#2946 - fMRIPrep roadmap (m8,16)
Issue -
State: open - Opened by esavary over 1 year ago
#2945 - FIX: Pass reference image to unwarp_wf, use reference fieldwarp for single shot
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 3 comments
#2944 - DOC: Altered CLI option grouping
Pull Request -
State: closed - Opened by Lestropie over 1 year ago
- 2 comments
#2944 - DOC: Altered CLI option grouping
Pull Request -
State: closed - Opened by Lestropie over 1 year ago
- 2 comments
#2943 - DOC: Update lesion ROI documentation, warn in docs and app about upcoming changes
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#2942 - Bids-Validation non-zero exit status 3. EISDIR: illegal operation on a directory
Issue -
State: closed - Opened by jesswood64 over 1 year ago
- 1 comment
#2942 - Bids-Validation non-zero exit status 3. EISDIR: illegal operation on a directory
Issue -
State: open - Opened by jesswood64 over 1 year ago
#2941 - ENH: Merge T2w images and coregister to T1w template
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 3 comments
#2941 - ENH: Merge T2w images and coregister to T1w template
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 3 comments
#2940 - MNT: Warn that AROMA support will be removed in a future version
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2939 - FIX: Build leftovers
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2938 - CI: Weekly docker build from scratch
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#2937 - RF: Use DataFrame.rename instead of ad hoc process
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2937 - RF: Use DataFrame.rename instead of ad hoc process
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2936 - Remove ICA-AROMA
Issue -
State: closed - Opened by effigies over 1 year ago
- 13 comments
Labels: feature
#2936 - Remove ICA-AROMA
Issue -
State: open - Opened by effigies over 1 year ago
- 10 comments
Labels: feature
#2935 - TraitError: The 's0_map' trait of a T2SMapOutputSpec instance must be a pathlike object or string representing an existing file, but a value of '/scratch/fmriprep_22_1_wf/single_subject_001_wf/func_preproc_task_rest_echo_01_wf/bold_t2smap_wf/t2smap_node/S0map.nii.gz' was specified
Issue -
State: closed - Opened by AndreaZHU111 over 1 year ago
- 5 comments
Labels: bug
#2934 - Error in nodes _midthickness0 and _midthickness1
Issue -
State: closed - Opened by heffjos over 1 year ago
- 2 comments
Labels: bug
#2931 - MNT: Update Ubuntu, FreeSurfer, AFNI and Convert3D
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 4 comments
#2931 - MNT: Update Ubuntu, FreeSurfer, AFNI and Convert3D
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 4 comments
#2930 - DOC: Update docs following read-through
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
Labels: documentation
#2929 - Errors in bold_std_trans_wf + bold_confounds_wf
Issue -
State: closed - Opened by LuRoe7 over 1 year ago
- 1 comment
Labels: bug
#2925 - A question about tCompCor components (top 5% variable voxels within a mask covering the subcortical regions).
Issue -
State: open - Opened by charujing almost 2 years ago
- 1 comment
Labels: bug
#2925 - A question about tCompCor components (top 5% variable voxels within a mask covering the subcortical regions).
Issue -
State: closed - Opened by charujing almost 2 years ago
- 2 comments
Labels: bug
#2918 - --ignore fieldmaps --use-syn-sdc not working with fmriprep v 22.1.0
Issue -
State: closed - Opened by julfou81 almost 2 years ago
Labels: bug
#2917 - Exception raised while executing Node get_dummy
Issue -
State: closed - Opened by Heechberri almost 2 years ago
- 3 comments
Labels: bug
#2917 - Exception raised while executing Node get_dummy
Issue -
State: closed - Opened by Heechberri almost 2 years ago
- 3 comments
Labels: bug
#2916 - CI action to build the Docker image with no layer caching
Issue -
State: closed - Opened by effigies almost 2 years ago
#2916 - CI action to build the Docker image with no layer caching
Issue -
State: closed - Opened by effigies almost 2 years ago
#2915 - Transition more packages to conda
Issue -
State: closed - Opened by effigies almost 2 years ago
- 1 comment
#2913 - RF: Split fMRIPrep into fit and derivatives workflows
Pull Request -
State: closed - Opened by effigies almost 2 years ago
- 5 comments
#2913 - RF: Split fMRIPrep into fit and derivatives workflows
Pull Request -
State: closed - Opened by effigies almost 2 years ago
- 5 comments
Labels: next
#2904 - Remove Pandas Index.ravel()
Issue -
State: closed - Opened by effigies almost 2 years ago
Labels: maintenance
#2898 - ENH: Tag memory based on data shape, annotate T2SMap
Pull Request -
State: closed - Opened by effigies almost 2 years ago
- 2 comments
Labels: memory, impact: high, effort: low, backport candidate
#2898 - ENH: Tag memory based on data shape, annotate T2SMap
Pull Request -
State: closed - Opened by effigies almost 2 years ago
- 2 comments
Labels: memory, impact: high, effort: low, backport candidate
#2896 - CifTi files created with --cifti-output are the same regardless of the --use-aroma flag
Issue -
State: closed - Opened by narunpat almost 2 years ago
- 1 comment
Labels: question
#2893 - Duplicated boilerplate in CITATION.md
Issue -
State: open - Opened by mateuszpawlik almost 2 years ago
- 1 comment
Labels: bug, reports, impact: low, effort: low
#2892 - lesion mask: inconsistent documentation ?
Issue -
State: closed - Opened by Remi-Gau almost 2 years ago
- 3 comments
Labels: documentation
#2892 - lesion mask: inconsistent documentation ?
Issue -
State: closed - Opened by Remi-Gau almost 2 years ago
- 3 comments
Labels: documentation
#2891 - SDC report svg on SBRef pepolar scheme alternates between SBRef and BOLD.
Issue -
State: open - Opened by bpinsard almost 2 years ago
- 4 comments
Labels: bug
#2890 - Naming of html reports and aroma regressors
Issue -
State: open - Opened by burdinskid13 almost 2 years ago
- 3 comments
Labels: feature, reports
#2890 - Naming of html reports and aroma regressors
Issue -
State: open - Opened by burdinskid13 almost 2 years ago
- 3 comments
Labels: feature, reports
#2889 - pepolar scheme using SBRef considered as sophisticated.
Issue -
State: closed - Opened by bpinsard almost 2 years ago
- 5 comments
Labels: bug
#2888 - Rename .func.gii to .time.gii?
Issue -
State: closed - Opened by effigies almost 2 years ago
- 4 comments
Labels: discussion
#2888 - Rename .func.gii to .time.gii?
Issue -
State: closed - Opened by effigies almost 2 years ago
- 4 comments
Labels: discussion
#2880 - fieldmaps not being filtered by session using bids-filter-file
Issue -
State: closed - Opened by dcmonroe almost 2 years ago
- 5 comments
Labels: bug
#2874 - mkdir failures in nipype nodes
Issue -
State: closed - Opened by effigies almost 2 years ago
- 3 comments
Labels: bug
#2868 - RF: Split derivatives into primary and secondary workflows.
Pull Request -
State: closed - Opened by effigies about 2 years ago
#2864 - Resource monitor files being emitted to output directory
Issue -
State: open - Opened by effigies about 2 years ago
- 1 comment
Labels: bug
#2863 - MNT: Pin environment
Pull Request -
State: closed - Opened by effigies about 2 years ago
- 4 comments
#2863 - MNT: Pin environment
Pull Request -
State: closed - Opened by effigies about 2 years ago
- 4 comments
#2861 - auto-recon error
Issue -
State: closed - Opened by juansanchezpena about 2 years ago
- 8 comments
Labels: bug
#2856 - NodeExecutionError & FileNotFoundError while performing fmriPrep steps using docker
Issue -
State: closed - Opened by kartikeysaran about 2 years ago
- 3 comments
Labels: bug
#2856 - NodeExecutionError & FileNotFoundError while performing fmriPrep steps using docker
Issue -
State: closed - Opened by kartikeysaran about 2 years ago
- 3 comments
Labels: bug
#2855 - ENH: Add option to exclude projecting high variance voxels to surface
Pull Request -
State: closed - Opened by madisoth about 2 years ago
- 2 comments
#2855 - ENH: Add option to exclude projecting high variance voxels to surface
Pull Request -
State: closed - Opened by madisoth about 2 years ago
- 2 comments
#2842 - Allow dummy-scans to be specified per-task
Issue -
State: open - Opened by effigies about 2 years ago
Labels: fmripost
#2838 - Preprocessing did not finish successfully. Errors occurred while processing data from participants: mp0001 (31)
Issue -
State: closed - Opened by roya2022 about 2 years ago
- 2 comments
#2835 - TOPUP issues in functionals, even though the topup field looks reasonable
Issue -
State: closed - Opened by cmpetty about 2 years ago
- 8 comments
#2835 - TOPUP issues in functionals, even though the topup field looks reasonable
Issue -
State: closed - Opened by cmpetty about 2 years ago
- 8 comments
#2830 - FSL's topup implementation (fmriprep >=21) significantly worse than AFNI's Qwarp (fmriprep <20)
Issue -
State: closed - Opened by Gilles86 about 2 years ago
- 19 comments
Labels: bug, sdc
#2827 - T2SMap error
Issue -
State: closed - Opened by quach-al about 2 years ago
- 5 comments
Labels: bug, me-epi, multiecho
#2822 - Improvements to BOLD surface projection algorithm via filtering poor timeseries
Issue -
State: closed - Opened by ericfeczko about 2 years ago
#2822 - Improvements to BOLD surface projection algorithm via filtering poor timeseries
Issue -
State: closed - Opened by ericfeczko about 2 years ago
#2812 - --skip-confounds flag (or similar)
Issue -
State: closed - Opened by effigies about 2 years ago
- 9 comments
#2811 - error in generating confounds
Issue -
State: closed - Opened by IFaillenot over 2 years ago
- 6 comments
Labels: bug
#2810 - MNI rigid-body output space
Issue -
State: closed - Opened by Lestropie over 2 years ago
- 6 comments
Labels: feature, derivatives
#2808 - Unusual fieldmap data
Issue -
State: closed - Opened by MasonTWells over 2 years ago
- 5 comments
#2808 - Unusual fieldmap data
Issue -
State: closed - Opened by MasonTWells over 2 years ago
- 5 comments
#2807 - [WIP] First steps towards minimal flag
Pull Request -
State: open - Opened by 36000 over 2 years ago
- 1 comment
#2807 - [WIP] First steps towards minimal flag
Pull Request -
State: closed - Opened by 36000 over 2 years ago
- 2 comments
#2806 - fmriprep --minimal mode
Issue -
State: open - Opened by effigies over 2 years ago
- 2 comments
#2806 - fmriprep --minimal mode
Issue -
State: open - Opened by effigies over 2 years ago
- 2 comments
#2805 - fmriprep-apply CLI tool
Issue -
State: closed - Opened by effigies over 2 years ago
- 3 comments
#2796 - Image Artefacts after SDC correction
Issue -
State: closed - Opened by xuyangwen over 2 years ago
- 2 comments
Labels: bug, sdc
#2793 - unsmoothed first volume in smoothAROMAnonaggr*.nii.gz
Issue -
State: closed - Opened by ka251 over 2 years ago
- 3 comments
#2790 - Fieldmaps for multiple techniques
Issue -
State: closed - Opened by xuyangwen over 2 years ago
- 5 comments
Labels: documentation
#2790 - Fieldmaps for multiple techniques
Issue -
State: closed - Opened by xuyangwen over 2 years ago
- 5 comments
Labels: documentation
#2777 - Incorrect/dark functional images after SDC with SyN
Issue -
State: closed - Opened by alexsayal over 2 years ago
- 16 comments
Labels: bug, SyN-SDC, sdc
#2777 - Incorrect/dark functional images after SDC with SyN
Issue -
State: closed - Opened by alexsayal over 2 years ago
- 16 comments
Labels: bug, SyN-SDC, sdc