Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/fmriprep issues and pull requests
#3037 - FIX: Remove bad metadata input from ds_goodvoxels_mask
Pull Request -
State: closed - Opened by effigies over 1 year ago
#3036 - Memory issues during gen_avg for high-res fMRI data
Issue -
State: closed - Opened by bwinsto2 over 1 year ago
- 2 comments
Labels: bug
#3036 - Memory issues during gen_avg for high-res fMRI data
Issue -
State: closed - Opened by bwinsto2 over 1 year ago
- 2 comments
Labels: bug
#3035 - Any FreeSurfer output space is required when using `--project-goodvoxels`
Issue -
State: closed - Opened by demidenm over 1 year ago
- 4 comments
Labels: bug
#3035 - Any FreeSurfer output space is required when using `--project-goodvoxels`
Issue -
State: closed - Opened by demidenm over 1 year ago
- 4 comments
Labels: bug
#3032 - REL: 23.1.0
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#3031 - PIN: nipreps/sdcflows#366
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3030 - Add `--me-t2s-fit-method` parameter
Pull Request -
State: closed - Opened by tsalo over 1 year ago
Labels: feature, me-epi, multiecho
#3030 - Add `--me-t2s-fit-method` parameter
Pull Request -
State: closed - Opened by tsalo over 1 year ago
Labels: feature, me-epi, multiecho
#3029 - Add option to control t2smap fittype
Issue -
State: closed - Opened by tsalo over 1 year ago
- 2 comments
Labels: feature, me-epi, multiecho
#3028 - FIX: Raise RuntimeError at build if echos have mismatched shapes
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3028 - FIX: Raise RuntimeError at build if echos have mismatched shapes
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3027 - Would '--anat-only' crashes with '--use-aroma', or '--ignore slicetiming' option?
Issue -
State: closed - Opened by shawnyoung23 over 1 year ago
- 1 comment
Labels: bug
#3027 - Would '--anat-only' crashes with '--use-aroma', or '--ignore slicetiming' option?
Issue -
State: closed - Opened by shawnyoung23 over 1 year ago
- 1 comment
Labels: bug
#3026 - ValueError: Could not build path with entities
Issue -
State: closed - Opened by bogeng-song over 1 year ago
- 4 comments
Labels: bug
#3026 - ValueError: Could not build path with entities
Issue -
State: closed - Opened by bogeng-song over 1 year ago
- 4 comments
Labels: bug
#3025 - RF: Filter fieldmaps based on whether they will be used to correct a BOLD series
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 4 comments
#3025 - RF: Filter fieldmaps based on whether they will be used to correct a BOLD series
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 4 comments
#3024 - reason: TypeError: Cannot read properties of undefined (reading 'split')
Issue -
State: open - Opened by YasmineMH1997 over 1 year ago
- 2 comments
Labels: bug
#3024 - reason: TypeError: Cannot read properties of undefined (reading 'split')
Issue -
State: closed - Opened by YasmineMH1997 over 1 year ago
- 3 comments
Labels: bug
#3023 - missing dataset_description.json file when run preprocess with mac m1 system
Issue -
State: closed - Opened by bogeng-song over 1 year ago
- 1 comment
Labels: question
#3023 - missing dataset_description.json file when run preprocess with mac m1 system
Issue -
State: closed - Opened by bogeng-song over 1 year ago
- 1 comment
Labels: question
#3022 - FIX: Update sloppy/debug parameters in anatomical base workflow
Pull Request -
State: closed - Opened by mgxd over 1 year ago
- 2 comments
#3022 - FIX: Update sloppy/debug parameters in anatomical base workflow
Pull Request -
State: closed - Opened by mgxd over 1 year ago
- 2 comments
#3021 - Crash on bad TOPUP orientations
Issue -
State: open - Opened by effigies over 1 year ago
Labels: feature, good first issue
#3021 - Crash on bad TOPUP orientations
Issue -
State: open - Opened by effigies over 1 year ago
Labels: feature, good first issue
#3020 - TypeError: Object of type BIDSImageFile is not JSON serializable
Issue -
State: closed - Opened by smeisler over 1 year ago
- 4 comments
Labels: bug
#3020 - TypeError: Object of type BIDSImageFile is not JSON serializable
Issue -
State: closed - Opened by smeisler over 1 year ago
- 4 comments
Labels: bug
#3019 - 'dataset_description.json' is missing from project root.
Issue -
State: closed - Opened by gargiris over 1 year ago
- 1 comment
#3019 - 'dataset_description.json' is missing from project root.
Issue -
State: closed - Opened by gargiris over 1 year ago
- 1 comment
#3018 - Using NORM and non-NORM T1w images
Issue -
State: open - Opened by effigies over 1 year ago
- 3 comments
#3018 - Using NORM and non-NORM T1w images
Issue -
State: closed - Opened by effigies over 1 year ago
- 3 comments
#3017 - CI: Bump ds210 work cache
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3017 - CI: Bump ds210 work cache
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3016 - MNT: Update ANTs pin in Docker image
Pull Request -
State: closed - Opened by effigies over 1 year ago
#3015 - autorecon1 "ERROR: OS is missing bc (binary calculator) utility"
Issue -
State: closed - Opened by madisoth over 1 year ago
- 1 comment
Labels: bug
#3014 - Bump requests from 2.28.2 to 2.31.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#3013 - Susceptibility distortion correction introduces distortion
Issue -
State: closed - Opened by ChristianNSchmitz over 1 year ago
- 25 comments
Labels: bug
#3012 - CI: Use registry for layer caching
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#3011 - ENH: Resample BOLD to fsLR directly, dropping fsaverage intermediate
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 3 comments
#3009 - Ensure per-BOLD SyN-SDC does not require TotalReadoutTime
Issue -
State: open - Opened by effigies over 1 year ago
- 1 comment
#3008 - ENH: Allow SBref+EPI PEPolar fieldmaps to correct BOLD series
Pull Request -
State: closed - Opened by bpinsard over 1 year ago
- 2 comments
#3007 - I have the a question about freesurfer license.txt but I don't know why. Can you help me?
Issue -
State: closed - Opened by ZhyGao over 1 year ago
- 16 comments
Labels: bug
#3006 - traits.trait_errors.TraitError: The 'output_image' trait of a _FixN4BiasFieldCorrectionOutputSpec instance must be a pathlike object or string representing an existing file
Issue -
State: closed - Opened by shawnyoung23 over 1 year ago
- 26 comments
Labels: bug
#3005 - Error during workflow build if ME bold series don't match shapes
Issue -
State: closed - Opened by athenahowell over 1 year ago
- 6 comments
Labels: feature, me-epi, multiecho
#3004 - recon-all -s sub-001 exited with ERROR: FOV=272.000 > 256
Issue -
State: closed - Opened by marcomeixner over 1 year ago
- 3 comments
#3003 - Nibabel deprecation rasing when importing from nipype.interfaces.nipy.base
Issue -
State: closed - Opened by oesteban over 1 year ago
- 1 comment
Labels: bug
#3003 - Nibabel deprecation rasing when importing from nipype.interfaces.nipy.base
Issue -
State: open - Opened by oesteban over 1 year ago
Labels: bug
#3002 - “–cifti-output” flag causes an error on conf_plot
Issue -
State: open - Opened by printempsi over 1 year ago
- 1 comment
#3002 - “–cifti-output” flag causes an error on conf_plot
Issue -
State: closed - Opened by printempsi over 1 year ago
- 3 comments
Labels: question
#3001 - Error building Dockerfile_devel
Issue -
State: open - Opened by atsuch over 1 year ago
Labels: bug
#3001 - Error building Dockerfile_devel
Issue -
State: closed - Opened by atsuch over 1 year ago
- 1 comment
Labels: bug
#3000 - Error in cortribbon node with T2 in fmriprep 23.0.2
Issue -
State: closed - Opened by liuzhenqi77 over 1 year ago
- 2 comments
Labels: bug
#3000 - Error in cortribbon node with T2 in fmriprep 23.0.2
Issue -
State: closed - Opened by liuzhenqi77 over 1 year ago
- 2 comments
Labels: bug
#2999 - Phasediff field maps problem with V23.0.2
Issue -
State: closed - Opened by manzouri over 1 year ago
- 1 comment
Labels: bug
#2998 - FIX: Mask BOLD with goodvoxels, not goodvoxels+ribbon
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#2997 - FIX: Mask BOLD with goodvoxels, not goodvoxels+ribbon
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2997 - FIX: Mask BOLD with goodvoxels, not goodvoxels+ribbon
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2995 - ENH: Restore AROMA
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2994 - FIX: Inconsistent fmapless estimation when ignoring fieldmaps
Pull Request -
State: open - Opened by mgxd over 1 year ago
#2994 - FIX: Inconsistent fmapless estimation when ignoring fieldmaps
Pull Request -
State: closed - Opened by mgxd over 1 year ago
#2993 - Error in get_img_orientation during workflow setup in 20.2.7 but not in 20.2.0
Issue -
State: closed - Opened by ins0mniac2 over 1 year ago
- 14 comments
Labels: bug
#2993 - Error in get_img_orientation during workflow setup in 20.2.7 but not in 20.2.0
Issue -
State: closed - Opened by ins0mniac2 over 1 year ago
- 14 comments
Labels: bug
#2992 - MNT: Update governance docs
Pull Request -
State: open - Opened by effigies over 1 year ago
#2992 - MNT: Update governance docs
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2991 - Port to nipreps/GOVERNANCE style for the ``.maint/`` files, and set a first MAINTAINERS team
Issue -
State: open - Opened by oesteban over 1 year ago
- 1 comment
Labels: documentation
#2991 - Port to nipreps/GOVERNANCE style for the ``.maint/`` files, and set a first MAINTAINERS team
Issue -
State: closed - Opened by oesteban over 1 year ago
- 1 comment
Labels: documentation
#2990 - good voxels masking error
Issue -
State: open - Opened by juansanchezpena over 1 year ago
- 8 comments
Labels: bug
#2990 - good voxels masking error
Issue -
State: closed - Opened by juansanchezpena over 1 year ago
- 14 comments
Labels: bug
#2988 - Bump sentry-sdk from 1.3.1 to 1.14.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 3 comments
Labels: dependencies
#2988 - Bump sentry-sdk from 1.3.1 to 1.14.0
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 3 comments
Labels: dependencies
#2986 - FIX: Dilate BOLD mask by 2 voxels to prevent over-aggressive masking degrading T2* map estimation
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#2986 - FIX: Dilate BOLD mask by 2 voxels to prevent over-aggressive masking degrading T2* map estimation
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 2 comments
#2985 - FIX: Estimate free memory with "available", not "free"
Pull Request -
State: closed - Opened by effigies over 1 year ago
Labels: heuristics, backport candidate
#2984 - CI: Docker layer caching
Pull Request -
State: open - Opened by effigies over 1 year ago
#2984 - CI: Docker layer caching
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2983 - ConnectionResetError, no additional info with verbose
Issue -
State: closed - Opened by hugofluhr over 1 year ago
- 6 comments
Labels: bug
#2983 - ConnectionResetError, no additional info with verbose
Issue -
State: closed - Opened by hugofluhr over 1 year ago
- 6 comments
Labels: bug
#2982 - MNT: Refactor Docker build process
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 5 comments
#2980 - MNT: Update Docker image to FSL 6.0.6.2
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2979 - Location of subject html files
Issue -
State: closed - Opened by marcelzwiers over 1 year ago
- 1 comment
#2978 - slice timing advice incorrect in outputs.rst
Issue -
State: open - Opened by thoernst over 1 year ago
Labels: documentation
#2978 - slice timing advice incorrect in outputs.rst
Issue -
State: closed - Opened by thoernst over 1 year ago
- 1 comment
Labels: documentation
#2977 - FileNotFoundError: [Errno 2] No such file or directory (mri_robust_register command)
Issue -
State: closed - Opened by junxiatree over 1 year ago
- 1 comment
Labels: bug
#2973 - mpr2mni305 execution aborted
Issue -
State: open - Opened by pareesa20 over 1 year ago
- 1 comment
Labels: bug
#2973 - mpr2mni305 execution aborted
Issue -
State: closed - Opened by pareesa20 over 1 year ago
- 1 comment
Labels: bug
#2972 - Error EISDIR : no authorization to read, even though rights were set
Issue -
State: closed - Opened by laurec00 over 1 year ago
- 4 comments
Labels: bug
#2971 - error with --use-aroma
Issue -
State: closed - Opened by BRAICLab over 1 year ago
- 2 comments
Labels: bug
#2971 - error with --use-aroma
Issue -
State: closed - Opened by BRAICLab over 1 year ago
- 2 comments
Labels: bug
#2970 - fmriprep crash on imcomplete fieldmap
Issue -
State: closed - Opened by marcelzwiers over 1 year ago
- 1 comment
Labels: bug
#2969 - DOC: Add TemplateFlow's citation into bibtex file
Pull Request -
State: closed - Opened by oesteban over 1 year ago
#2968 - Limit fieldmap estimation to ones that will be used to correct BOLD files
Issue -
State: closed - Opened by G10v4nn1G over 1 year ago
- 4 comments
Labels: feature, impact: low, effort: medium, sdc
#2967 - t1w_merge error in single subject multi session
Issue -
State: closed - Opened by Beaconian over 1 year ago
- 3 comments
Labels: bug
#2966 - ENH: Remove ICA-AROMA from workflow and docs
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2966 - ENH: Remove ICA-AROMA from workflow and docs
Pull Request -
State: closed - Opened by effigies over 1 year ago
#2964 - REL: 23.0.0
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 4 comments
#2964 - REL: 23.0.0
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 4 comments
#2963 - Flag for changing high pass filter for compcor
Issue -
State: closed - Opened by BAshinoff over 1 year ago
- 8 comments
Labels: feature
#2962 - Comments on HTML report version 23.0.0rc0
Issue -
State: closed - Opened by julfou81 over 1 year ago
- 2 comments
#2961 - Singularity image & FREESURFER_HOME path
Issue -
State: closed - Opened by muet0005 over 1 year ago
- 4 comments
Labels: container, faq