Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/fmriprep issues and pull requests
#3110 - Update GitHub actions
Pull Request -
State: closed - Opened by DimitriPapadopoulos 12 months ago
- 4 comments
#3109 - MNT: http:// → https://
Pull Request -
State: closed - Opened by DimitriPapadopoulos 12 months ago
- 1 comment
#3108 - fMRIPrep 23.2.0alpha
Pull Request -
State: closed - Opened by effigies 12 months ago
- 20 comments
#3107 - MNT: Bump version requirements
Pull Request -
State: closed - Opened by effigies 12 months ago
- 1 comment
#3106 - FIX: Swap direction of fmap-EPI transform
Pull Request -
State: closed - Opened by effigies 12 months ago
- 1 comment
Labels: next
#3105 - Add a --fs-reuse-base option to reuse existing freesurfer outputs from a longitudinal pipeline
Pull Request -
State: closed - Opened by bpinsard 12 months ago
- 5 comments
#3104 - ERROR: a valid license file is required for FreeSurfer to run.
Issue -
State: closed - Opened by AnnJingLyu 12 months ago
- 4 comments
Labels: bug
#3103 - `mritotal` subcommands not found
Issue -
State: closed - Opened by tsalo almost 1 year ago
- 3 comments
Labels: bug
#3102 - Bump pillow from 10.0.0 to 10.0.1
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 2 comments
Labels: dependencies
#3101 - FIX: Use Py2-compatible version file template for fmriprep-docker
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3100 - Bump urllib3 from 2.0.4 to 2.0.6
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 2 comments
Labels: dependencies
#3099 - FIX: Connect EPI-to-fieldmap transform
Pull Request -
State: closed - Opened by effigies about 1 year ago
Labels: next
#3098 - FIX: Minor fixes to work with MSMSulc-enabled smriprep-next
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3097 - MNT: http:// → https://
Pull Request -
State: closed - Opened by DimitriPapadopoulos about 1 year ago
- 1 comment
#3096 - Fix typo found by codespell
Pull Request -
State: closed - Opened by DimitriPapadopoulos about 1 year ago
#3095 - Report clearly bids filters
Issue -
State: open - Opened by celprov about 1 year ago
- 3 comments
Labels: documentation, good first issue, impact: medium, effort: low
#3094 - FIX: Eliminate distortions in phasediff images caused by unmasked fieldmap estimates
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 3 comments
#3093 - Strange pattern on distortion corrected images
Issue -
State: closed - Opened by jameswyngaarden about 1 year ago
- 1 comment
Labels: bug
#3092 - msmsulc error
Issue -
State: closed - Opened by zugmana about 1 year ago
- 3 comments
Labels: bug
#3091 - Build(deps): Bump cryptography from 41.0.3 to 41.0.4
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 2 comments
Labels: dependencies
#3090 - DOCKER: Remove mritotal and dependencies from FreeSurfer ignore file
Pull Request -
State: closed - Opened by E-Loba about 1 year ago
- 3 comments
#3089 - fieldmap-less distortion correction not working
Issue -
State: closed - Opened by DVSneuro about 1 year ago
- 5 comments
Labels: bug
#3088 - mritotal: Command not found.
Issue -
State: closed - Opened by E-Loba about 1 year ago
- 4 comments
Labels: bug, impact: low, effort: low
#3087 - MSM - mismatch
Issue -
State: closed - Opened by juansanchezpena about 1 year ago
- 3 comments
Labels: bug, CIFTI / Grayordinates
#3086 - Node Name Error : ValueError: Could not build path with entities {'subject': 'Subject1', 'run': 01, 'suffix': 'bold', 'datatype': 'figures', 'extension': 'html', 'desc': 'validation'}.
Issue -
State: closed - Opened by belfinrv about 1 year ago
- 1 comment
Labels: bug
#3086 - Node Name Error : ValueError: Could not build path with entities {'subject': 'Subject1', 'run': 01, 'suffix': 'bold', 'datatype': 'figures', 'extension': 'html', 'desc': 'validation'}.
Issue -
State: closed - Opened by belfinrv about 1 year ago
- 1 comment
Labels: bug
#3085 - ENH: Add MSMSulc
Pull Request -
State: open - Opened by mgxd about 1 year ago
- 1 comment
#3085 - ENH: Add MSMSulc
Pull Request -
State: closed - Opened by mgxd about 1 year ago
- 1 comment
#3084 - ENH: Add MSMSulc
Pull Request -
State: closed - Opened by mgxd about 1 year ago
- 2 comments
#3084 - ENH: Add MSMSulc
Pull Request -
State: closed - Opened by mgxd about 1 year ago
- 2 comments
#3083 - FileNotFoundError: 'aparc_a2009s_stats' of a ReconAll interface
Issue -
State: closed - Opened by celprov about 1 year ago
- 1 comment
Labels: bug
#3083 - FileNotFoundError: 'aparc_a2009s_stats' of a ReconAll interface
Issue -
State: closed - Opened by celprov about 1 year ago
- 1 comment
Labels: bug
#3082 - ENH: Add reporting workflow for BOLD fit
Pull Request -
State: open - Opened by effigies about 1 year ago
- 2 comments
Labels: next
#3082 - ENH: Add reporting workflow for BOLD fit
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 8 comments
Labels: next
#3081 - ENH: Generate anatomical derivatives useful for resampling
Pull Request -
State: open - Opened by effigies about 1 year ago
- 1 comment
Labels: next
#3081 - ENH: Generate anatomical derivatives useful for resampling
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 4 comments
Labels: next
#3080 - One visual report per session for dataset with many sessions for a single subject
Issue -
State: closed - Opened by celprov about 1 year ago
- 1 comment
Labels: feature, reports, impact: medium, effort: medium
#3080 - One visual report per session for dataset with many sessions for a single subject
Issue -
State: open - Opened by celprov about 1 year ago
#3079 - CI: Stop testing legacy layout
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3079 - CI: Stop testing legacy layout
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
Labels: next
#3078 - RF: Update derivative cache spec, calculate per-BOLD, reuse boldref2fmap
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
Labels: next
#3077 - FIX: Update connections to unwarp_wf, convert ITK transforms to text
Pull Request -
State: closed - Opened by effigies about 1 year ago
Labels: next
#3076 - MNT: Pin sdcflows 2.5.x
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 2 comments
#3076 - MNT: Pin sdcflows 2.5.x
Pull Request -
State: open - Opened by effigies about 1 year ago
- 1 comment
#3075 - RF: Update workflow to use sdcflows@master unwarp_wf
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3073 - MNT: Update environment
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 3 comments
#3072 - Build(deps): Bump tornado from 6.3.2 to 6.3.3
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 3 comments
Labels: dependencies
#3071 - `--cifti-output` + `--fs-no-reconall` produces confusing error messages
Issue -
State: open - Opened by effigies about 1 year ago
Labels: bug, impact: low, effort: low
#3070 - Changes needed to satisfy current derivatives validator
Issue -
State: open - Opened by effigies about 1 year ago
Labels: bug
#3070 - Changes needed to satisfy current derivatives validator
Issue -
State: open - Opened by effigies about 1 year ago
Labels: bug
#3069 - Segmentation fault error
Issue -
State: closed - Opened by caaperezag about 1 year ago
- 1 comment
Labels: bug
#3068 - Running fmriprep on M2 chip Mac using Docker
Issue -
State: closed - Opened by MtKana about 1 year ago
- 4 comments
Labels: bug
#3067 - MNT: Depend on newer sphinx
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3066 - CI: Improve tag detection for docker builds
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3066 - CI: Improve tag detection for docker builds
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 1 comment
#3065 - fMRIPrep on TBI data
Issue -
State: closed - Opened by shilpitju1 about 1 year ago
- 8 comments
#3064 - ENH: insert gradunwarp in bold workflow
Pull Request -
State: open - Opened by bpinsard about 1 year ago
- 1 comment
#3064 - ENH: insert gradunwarp in bold workflow
Pull Request -
State: open - Opened by bpinsard about 1 year ago
- 1 comment
#3063 - Bump certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: open - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#3063 - Bump certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 3 comments
Labels: dependencies
#3062 - PATCH: Use mutualinfo cost function for MCFLIRT
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 5 comments
#3061 - MNT: Install ANTs from conda-forge
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 8 comments
#3061 - MNT: Install ANTs from conda-forge
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 8 comments
#3060 - FIX: Pass sbref files to SyN workflow
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 3 comments
#3060 - FIX: Pass sbref files to SyN workflow
Pull Request -
State: closed - Opened by effigies about 1 year ago
- 3 comments
#3059 - Low process ulimits can result in missing output failures (here in fsl2itk)
Issue -
State: closed - Opened by Shotgunosine about 1 year ago
- 26 comments
Labels: faq
#3059 - Low process ulimits can result in missing output failures (here in fsl2itk)
Issue -
State: closed - Opened by Shotgunosine about 1 year ago
- 26 comments
Labels: faq
#3058 - Split into separate fit & apply workflows
Issue -
State: closed - Opened by effigies about 1 year ago
- 9 comments
Labels: next
#3057 - Large Number of Masked Out Voxels in ME Data
Issue -
State: closed - Opened by rylandm about 1 year ago
- 16 comments
Labels: bug
#3056 - Avoiding sbrefs for the coregistration reference causes poor registration in low contrast multiband sequences
Issue -
State: closed - Opened by effigies about 1 year ago
- 20 comments
Labels: bug, next
#3055 - boldref intensity
Issue -
State: open - Opened by michaelf500 over 1 year ago
- 3 comments
Labels: bug
#3055 - boldref intensity
Issue -
State: closed - Opened by michaelf500 over 1 year ago
- 6 comments
Labels: bug
#3054 - DOC: Update outputs.rst to indicate hemi entity precedes space
Issue -
State: open - Opened by askieslinger over 1 year ago
- 2 comments
Labels: documentation
#3054 - DOC: Update outputs.rst to indicate hemi entity precedes space
Issue -
State: closed - Opened by askieslinger over 1 year ago
- 2 comments
Labels: documentation
#3053 - Save both initial and final bold reference files
Issue -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3053 - Save both initial and final bold reference files
Issue -
State: open - Opened by effigies over 1 year ago
#3052 - MNT: Drop Python 3.8 and numpy 1.21 support (NEP29)
Pull Request -
State: closed - Opened by effigies over 1 year ago
#3052 - MNT: Drop Python 3.8 and numpy 1.21 support (NEP29)
Pull Request -
State: closed - Opened by effigies over 1 year ago
#3051 - DOC: Fix documentation and description for init_bold_grayords_wf
Pull Request -
State: closed - Opened by Shotgunosine over 1 year ago
- 1 comment
#3051 - DOC: Fix documentation and description for init_bold_grayords_wf
Pull Request -
State: closed - Opened by Shotgunosine over 1 year ago
- 1 comment
#3050 - Documentation for init_bold_grayords_wf out of date
Issue -
State: closed - Opened by Shotgunosine over 1 year ago
#3050 - Documentation for init_bold_grayords_wf out of date
Issue -
State: closed - Opened by Shotgunosine over 1 year ago
#3049 - DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image
Pull Request -
State: closed - Opened by effigies over 1 year ago
#3049 - DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image
Pull Request -
State: closed - Opened by effigies over 1 year ago
#3046 - `validate_nii` node failing when using SYN SDC
Issue -
State: closed - Opened by smeisler over 1 year ago
- 7 comments
Labels: bug
#3046 - `validate_nii` node failing when using SYN SDC
Issue -
State: closed - Opened by smeisler over 1 year ago
- 7 comments
Labels: bug
#3045 - AROMA not running in 23.1
Issue -
State: closed - Opened by dmd over 1 year ago
- 6 comments
Labels: bug
#3045 - AROMA not running in 23.1
Issue -
State: closed - Opened by dmd over 1 year ago
- 6 comments
Labels: bug
#3044 - MNT: fix flake8 warnings
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 1 comment
#3044 - MNT: fix flake8 warnings
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 1 comment
#3043 - STY: Apply pyupgrade suggestions
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 1 comment
#3042 - MNT: update update_zenodo.py script
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 2 comments
#3042 - MNT: update update_zenodo.py script
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 2 comments
#3040 - CI: Clean up pre-release builds
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3040 - CI: Clean up pre-release builds
Pull Request -
State: closed - Opened by effigies over 1 year ago
- 1 comment
#3039 - MNT: Fix welcome message formatting and instructions
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 3 comments
#3039 - MNT: Fix welcome message formatting and instructions
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 3 comments
#3038 - MNT: Python 3.11 should be supported
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 3 comments
#3038 - MNT: Python 3.11 should be supported
Pull Request -
State: closed - Opened by DimitriPapadopoulos over 1 year ago
- 3 comments
#3037 - FIX: Remove bad metadata input from ds_goodvoxels_mask
Pull Request -
State: closed - Opened by effigies over 1 year ago