Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nipreps/fmriprep issues and pull requests

#3110 - Update GitHub actions

Pull Request - State: closed - Opened by DimitriPapadopoulos 12 months ago - 4 comments

#3109 - MNT: http:// → https://

Pull Request - State: closed - Opened by DimitriPapadopoulos 12 months ago - 1 comment

#3108 - fMRIPrep 23.2.0alpha

Pull Request - State: closed - Opened by effigies 12 months ago - 20 comments

#3107 - MNT: Bump version requirements

Pull Request - State: closed - Opened by effigies 12 months ago - 1 comment

#3106 - FIX: Swap direction of fmap-EPI transform

Pull Request - State: closed - Opened by effigies 12 months ago - 1 comment
Labels: next

#3104 - ERROR: a valid license file is required for FreeSurfer to run.

Issue - State: closed - Opened by AnnJingLyu 12 months ago - 4 comments
Labels: bug

#3103 - `mritotal` subcommands not found

Issue - State: closed - Opened by tsalo almost 1 year ago - 3 comments
Labels: bug

#3102 - Bump pillow from 10.0.0 to 10.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#3101 - FIX: Use Py2-compatible version file template for fmriprep-docker

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3100 - Bump urllib3 from 2.0.4 to 2.0.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#3099 - FIX: Connect EPI-to-fieldmap transform

Pull Request - State: closed - Opened by effigies about 1 year ago
Labels: next

#3098 - FIX: Minor fixes to work with MSMSulc-enabled smriprep-next

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3097 - MNT: http:// → https://

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago - 1 comment

#3096 - Fix typo found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago

#3095 - Report clearly bids filters

Issue - State: open - Opened by celprov about 1 year ago - 3 comments
Labels: documentation, good first issue, impact: medium, effort: low

#3094 - FIX: Eliminate distortions in phasediff images caused by unmasked fieldmap estimates

Pull Request - State: closed - Opened by effigies about 1 year ago - 3 comments

#3093 - Strange pattern on distortion corrected images

Issue - State: closed - Opened by jameswyngaarden about 1 year ago - 1 comment
Labels: bug

#3092 - msmsulc error

Issue - State: closed - Opened by zugmana about 1 year ago - 3 comments
Labels: bug

#3091 - Build(deps): Bump cryptography from 41.0.3 to 41.0.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#3090 - DOCKER: Remove mritotal and dependencies from FreeSurfer ignore file

Pull Request - State: closed - Opened by E-Loba about 1 year ago - 3 comments

#3089 - fieldmap-less distortion correction not working

Issue - State: closed - Opened by DVSneuro about 1 year ago - 5 comments
Labels: bug

#3088 - mritotal: Command not found.

Issue - State: closed - Opened by E-Loba about 1 year ago - 4 comments
Labels: bug, impact: low, effort: low

#3087 - MSM - mismatch

Issue - State: closed - Opened by juansanchezpena about 1 year ago - 3 comments
Labels: bug, CIFTI / Grayordinates

#3085 - ENH: Add MSMSulc

Pull Request - State: open - Opened by mgxd about 1 year ago - 1 comment

#3085 - ENH: Add MSMSulc

Pull Request - State: closed - Opened by mgxd about 1 year ago - 1 comment

#3084 - ENH: Add MSMSulc

Pull Request - State: closed - Opened by mgxd about 1 year ago - 2 comments

#3084 - ENH: Add MSMSulc

Pull Request - State: closed - Opened by mgxd about 1 year ago - 2 comments

#3083 - FileNotFoundError: 'aparc_a2009s_stats' of a ReconAll interface

Issue - State: closed - Opened by celprov about 1 year ago - 1 comment
Labels: bug

#3083 - FileNotFoundError: 'aparc_a2009s_stats' of a ReconAll interface

Issue - State: closed - Opened by celprov about 1 year ago - 1 comment
Labels: bug

#3082 - ENH: Add reporting workflow for BOLD fit

Pull Request - State: open - Opened by effigies about 1 year ago - 2 comments
Labels: next

#3082 - ENH: Add reporting workflow for BOLD fit

Pull Request - State: closed - Opened by effigies about 1 year ago - 8 comments
Labels: next

#3081 - ENH: Generate anatomical derivatives useful for resampling

Pull Request - State: open - Opened by effigies about 1 year ago - 1 comment
Labels: next

#3081 - ENH: Generate anatomical derivatives useful for resampling

Pull Request - State: closed - Opened by effigies about 1 year ago - 4 comments
Labels: next

#3080 - One visual report per session for dataset with many sessions for a single subject

Issue - State: closed - Opened by celprov about 1 year ago - 1 comment
Labels: feature, reports, impact: medium, effort: medium

#3079 - CI: Stop testing legacy layout

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3079 - CI: Stop testing legacy layout

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment
Labels: next

#3078 - RF: Update derivative cache spec, calculate per-BOLD, reuse boldref2fmap

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment
Labels: next

#3077 - FIX: Update connections to unwarp_wf, convert ITK transforms to text

Pull Request - State: closed - Opened by effigies about 1 year ago
Labels: next

#3076 - MNT: Pin sdcflows 2.5.x

Pull Request - State: closed - Opened by effigies about 1 year ago - 2 comments

#3076 - MNT: Pin sdcflows 2.5.x

Pull Request - State: open - Opened by effigies about 1 year ago - 1 comment

#3075 - RF: Update workflow to use sdcflows@master unwarp_wf

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3073 - MNT: Update environment

Pull Request - State: closed - Opened by effigies about 1 year ago - 3 comments

#3072 - Build(deps): Bump tornado from 6.3.2 to 6.3.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 3 comments
Labels: dependencies

#3071 - `--cifti-output` + `--fs-no-reconall` produces confusing error messages

Issue - State: open - Opened by effigies about 1 year ago
Labels: bug, impact: low, effort: low

#3070 - Changes needed to satisfy current derivatives validator

Issue - State: open - Opened by effigies about 1 year ago
Labels: bug

#3070 - Changes needed to satisfy current derivatives validator

Issue - State: open - Opened by effigies about 1 year ago
Labels: bug

#3069 - Segmentation fault error

Issue - State: closed - Opened by caaperezag about 1 year ago - 1 comment
Labels: bug

#3068 - Running fmriprep on M2 chip Mac using Docker

Issue - State: closed - Opened by MtKana about 1 year ago - 4 comments
Labels: bug

#3067 - MNT: Depend on newer sphinx

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3066 - CI: Improve tag detection for docker builds

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3066 - CI: Improve tag detection for docker builds

Pull Request - State: closed - Opened by effigies about 1 year ago - 1 comment

#3065 - fMRIPrep on TBI data

Issue - State: closed - Opened by shilpitju1 about 1 year ago - 8 comments

#3064 - ENH: insert gradunwarp in bold workflow

Pull Request - State: open - Opened by bpinsard about 1 year ago - 1 comment

#3064 - ENH: insert gradunwarp in bold workflow

Pull Request - State: open - Opened by bpinsard about 1 year ago - 1 comment

#3063 - Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#3063 - Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 3 comments
Labels: dependencies

#3062 - PATCH: Use mutualinfo cost function for MCFLIRT

Pull Request - State: closed - Opened by effigies about 1 year ago - 5 comments

#3061 - MNT: Install ANTs from conda-forge

Pull Request - State: closed - Opened by effigies about 1 year ago - 8 comments

#3061 - MNT: Install ANTs from conda-forge

Pull Request - State: closed - Opened by effigies about 1 year ago - 8 comments

#3060 - FIX: Pass sbref files to SyN workflow

Pull Request - State: closed - Opened by effigies about 1 year ago - 3 comments

#3060 - FIX: Pass sbref files to SyN workflow

Pull Request - State: closed - Opened by effigies about 1 year ago - 3 comments

#3059 - Low process ulimits can result in missing output failures (here in fsl2itk)

Issue - State: closed - Opened by Shotgunosine about 1 year ago - 26 comments
Labels: faq

#3059 - Low process ulimits can result in missing output failures (here in fsl2itk)

Issue - State: closed - Opened by Shotgunosine about 1 year ago - 26 comments
Labels: faq

#3058 - Split into separate fit & apply workflows

Issue - State: closed - Opened by effigies about 1 year ago - 9 comments
Labels: next

#3057 - Large Number of Masked Out Voxels in ME Data

Issue - State: closed - Opened by rylandm about 1 year ago - 16 comments
Labels: bug

#3055 - boldref intensity

Issue - State: open - Opened by michaelf500 over 1 year ago - 3 comments
Labels: bug

#3055 - boldref intensity

Issue - State: closed - Opened by michaelf500 over 1 year ago - 6 comments
Labels: bug

#3054 - DOC: Update outputs.rst to indicate hemi entity precedes space

Issue - State: open - Opened by askieslinger over 1 year ago - 2 comments
Labels: documentation

#3054 - DOC: Update outputs.rst to indicate hemi entity precedes space

Issue - State: closed - Opened by askieslinger over 1 year ago - 2 comments
Labels: documentation

#3053 - Save both initial and final bold reference files

Issue - State: closed - Opened by effigies over 1 year ago - 1 comment

#3053 - Save both initial and final bold reference files

Issue - State: open - Opened by effigies over 1 year ago

#3052 - MNT: Drop Python 3.8 and numpy 1.21 support (NEP29)

Pull Request - State: closed - Opened by effigies over 1 year ago

#3052 - MNT: Drop Python 3.8 and numpy 1.21 support (NEP29)

Pull Request - State: closed - Opened by effigies over 1 year ago

#3051 - DOC: Fix documentation and description for init_bold_grayords_wf

Pull Request - State: closed - Opened by Shotgunosine over 1 year ago - 1 comment

#3051 - DOC: Fix documentation and description for init_bold_grayords_wf

Pull Request - State: closed - Opened by Shotgunosine over 1 year ago - 1 comment

#3050 - Documentation for init_bold_grayords_wf out of date

Issue - State: closed - Opened by Shotgunosine over 1 year ago

#3050 - Documentation for init_bold_grayords_wf out of date

Issue - State: closed - Opened by Shotgunosine over 1 year ago

#3049 - DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image

Pull Request - State: closed - Opened by effigies over 1 year ago

#3049 - DOCKER: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image

Pull Request - State: closed - Opened by effigies over 1 year ago

#3046 - `validate_nii` node failing when using SYN SDC

Issue - State: closed - Opened by smeisler over 1 year ago - 7 comments
Labels: bug

#3046 - `validate_nii` node failing when using SYN SDC

Issue - State: closed - Opened by smeisler over 1 year ago - 7 comments
Labels: bug

#3045 - AROMA not running in 23.1

Issue - State: closed - Opened by dmd over 1 year ago - 6 comments
Labels: bug

#3045 - AROMA not running in 23.1

Issue - State: closed - Opened by dmd over 1 year ago - 6 comments
Labels: bug

#3044 - MNT: fix flake8 warnings

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#3044 - MNT: fix flake8 warnings

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#3043 - STY: Apply pyupgrade suggestions

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 1 comment

#3042 - MNT: update update_zenodo.py script

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 2 comments

#3042 - MNT: update update_zenodo.py script

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 2 comments

#3040 - CI: Clean up pre-release builds

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment

#3040 - CI: Clean up pre-release builds

Pull Request - State: closed - Opened by effigies over 1 year ago - 1 comment

#3039 - MNT: Fix welcome message formatting and instructions

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 3 comments

#3039 - MNT: Fix welcome message formatting and instructions

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 3 comments

#3038 - MNT: Python 3.11 should be supported

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 3 comments

#3038 - MNT: Python 3.11 should be supported

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 3 comments

#3037 - FIX: Remove bad metadata input from ds_goodvoxels_mask

Pull Request - State: closed - Opened by effigies over 1 year ago