Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/fmriprep issues and pull requests
#3146 - ENH: Pass FLAIR images to anatomical workflow builder to include in boilerplate
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
#3145 - MNT: optimise size of PNG files
Pull Request -
State: closed - Opened by DimitriPapadopoulos 8 months ago
- 1 comment
#3144 - MNT: update vendored docs script `github_link.py`
Pull Request -
State: closed - Opened by DimitriPapadopoulos 8 months ago
- 1 comment
#3142 - ENH: Add --fs-no-resume option to reuse existing FreeSurfer outputs without resuming
Pull Request -
State: closed - Opened by bpinsard 8 months ago
- 1 comment
#3141 - MNT: Update tedana pin, test on Python 3.12
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
#3140 - Tag resampling nodes with memory estimates
Issue -
State: closed - Opened by effigies 8 months ago
#3138 - chore: update to latest migas api
Pull Request -
State: closed - Opened by mgxd 8 months ago
- 1 comment
#3137 - DOC: Improve report captions and update expected outputs in docs
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
Labels: next
#3137 - DOC: Improve report captions and update expected outputs in docs
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
Labels: next
#3136 - RF: Write out anatomical template derivatives
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
Labels: next
#3135 - CI: Test on Python 3.12
Pull Request -
State: closed - Opened by DimitriPapadopoulos 8 months ago
- 4 comments
#3134 - Final revisions for next branch
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
Labels: next
#3133 - Enable longitudinal structural analysis
Issue -
State: open - Opened by ChristianNSchmitz 8 months ago
- 1 comment
#3132 - MNT: Bump environment
Pull Request -
State: closed - Opened by effigies 8 months ago
- 1 comment
#3131 - ENH: Restore carpetplot and other final adjustments
Pull Request -
State: closed - Opened by effigies 8 months ago
- 4 comments
#3129 - ENH: Restore CIFTI-2 generation
Pull Request -
State: closed - Opened by effigies 8 months ago
- 3 comments
Labels: next
#3128 - Binding file paths to avoid the freesurfer _midthickness0 error resulting in a relative vs absolute filepath issue
Issue -
State: closed - Opened by katseitz 8 months ago
- 3 comments
Labels: bug
#3127 - When I started fmriprep using the docker command, I couldn't resolve error "AttributeError: type object 'loggers' has no attribute 'warning'"
Issue -
State: closed - Opened by Naoki-Take 8 months ago
- 10 comments
Labels: bug
#3126 - ENH: Restore resampling to surface GIFTIs
Pull Request -
State: closed - Opened by effigies 8 months ago
- 2 comments
#3125 - t2smap OOM
Issue -
State: open - Opened by bpinsard 8 months ago
- 4 comments
Labels: bug
#3124 - Ability to Change the High Pass Filter Cosine Basis Function in FMRIprep
Issue -
State: closed - Opened by danielsazhin 8 months ago
- 1 comment
#3123 - --use-syn-sdc not doing sdc with fmriprep v 23.1.4
Issue -
State: closed - Opened by julfou81 9 months ago
- 4 comments
Labels: bug
#3122 - OSError: Duplicate node name "func_preproc_*_wf" found.
Issue -
State: closed - Opened by lsempf 9 months ago
- 1 comment
Labels: bug
#3121 - ENH: Restore resampling BOLD to volumetric templates
Pull Request -
State: closed - Opened by effigies 9 months ago
- 3 comments
Labels: next
#3120 - ENH: Restore confound generation
Pull Request -
State: closed - Opened by effigies 9 months ago
- 3 comments
Labels: next
#3119 - CIFTI resampling weights
Issue -
State: closed - Opened by effigies 9 months ago
- 11 comments
Labels: CIFTI / Grayordinates, next
#3118 - Change `scanner` to `boldref` in non-HMC transform filenames
Pull Request -
State: closed - Opened by tsalo 9 months ago
- 5 comments
#3117 - BOLD reference to T1w transforms are mislabeled
Issue -
State: closed - Opened by tsalo 9 months ago
- 1 comment
Labels: bug, impact: low, effort: low
#3116 - ENH: Restore resampling to T1w target
Pull Request -
State: closed - Opened by effigies 9 months ago
- 4 comments
Labels: next
#3115 - Bump urllib3 from 2.0.4 to 2.0.7
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 2 comments
Labels: dependencies, python
#3114 - RF: Update primary bold workflow to incorporate single shot resampling
Pull Request -
State: closed - Opened by effigies 9 months ago
- 4 comments
#3113 - Bump pillow from 10.0.0 to 10.0.1
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies, python
#3112 - Bump codespell-project/actions-codespell from 1 to 2
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#3111 - Bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#3110 - Update GitHub actions
Pull Request -
State: closed - Opened by DimitriPapadopoulos 9 months ago
- 4 comments
#3109 - MNT: http:// → https://
Pull Request -
State: closed - Opened by DimitriPapadopoulos 9 months ago
- 1 comment
#3108 - fMRIPrep 23.2.0alpha
Pull Request -
State: closed - Opened by effigies 9 months ago
- 20 comments
#3107 - MNT: Bump version requirements
Pull Request -
State: closed - Opened by effigies 9 months ago
- 1 comment
#3106 - FIX: Swap direction of fmap-EPI transform
Pull Request -
State: closed - Opened by effigies 9 months ago
- 1 comment
Labels: next
#3105 - Add a --fs-reuse-base option to reuse existing freesurfer outputs from a longitudinal pipeline
Pull Request -
State: closed - Opened by bpinsard 9 months ago
- 5 comments
#3104 - ERROR: a valid license file is required for FreeSurfer to run.
Issue -
State: closed - Opened by AnnJingLyu 9 months ago
- 4 comments
Labels: bug
#3103 - `mritotal` subcommands not found
Issue -
State: closed - Opened by tsalo 9 months ago
- 3 comments
Labels: bug
#3102 - Bump pillow from 10.0.0 to 10.0.1
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 2 comments
Labels: dependencies
#3101 - FIX: Use Py2-compatible version file template for fmriprep-docker
Pull Request -
State: closed - Opened by effigies 9 months ago
- 1 comment
#3100 - Bump urllib3 from 2.0.4 to 2.0.6
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 2 comments
Labels: dependencies
#3099 - FIX: Connect EPI-to-fieldmap transform
Pull Request -
State: closed - Opened by effigies 9 months ago
Labels: next
#3098 - FIX: Minor fixes to work with MSMSulc-enabled smriprep-next
Pull Request -
State: closed - Opened by effigies 9 months ago
- 1 comment
#3097 - MNT: http:// → https://
Pull Request -
State: closed - Opened by DimitriPapadopoulos 9 months ago
- 1 comment
#3096 - Fix typo found by codespell
Pull Request -
State: closed - Opened by DimitriPapadopoulos 9 months ago
#3095 - Report clearly bids filters
Issue -
State: open - Opened by celprov 10 months ago
- 3 comments
Labels: documentation, good first issue, impact: medium, effort: low
#3094 - FIX: Eliminate distortions in phasediff images caused by unmasked fieldmap estimates
Pull Request -
State: closed - Opened by effigies 10 months ago
- 3 comments
#3093 - Strange pattern on distortion corrected images
Issue -
State: closed - Opened by jameswyngaarden 10 months ago
- 1 comment
Labels: bug
#3092 - msmsulc error
Issue -
State: closed - Opened by zugmana 10 months ago
- 3 comments
Labels: bug
#3091 - Build(deps): Bump cryptography from 41.0.3 to 41.0.4
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 2 comments
Labels: dependencies
#3090 - DOCKER: Remove mritotal and dependencies from FreeSurfer ignore file
Pull Request -
State: closed - Opened by E-Loba 10 months ago
- 3 comments
#3089 - fieldmap-less distortion correction not working
Issue -
State: closed - Opened by DVSneuro 10 months ago
- 5 comments
Labels: bug
#3088 - mritotal: Command not found.
Issue -
State: closed - Opened by E-Loba 10 months ago
- 4 comments
Labels: bug, impact: low, effort: low
#3087 - MSM - mismatch
Issue -
State: closed - Opened by juansanchezpena 10 months ago
- 3 comments
Labels: bug, CIFTI / Grayordinates
#3086 - Node Name Error : ValueError: Could not build path with entities {'subject': 'Subject1', 'run': 01, 'suffix': 'bold', 'datatype': 'figures', 'extension': 'html', 'desc': 'validation'}.
Issue -
State: closed - Opened by belfinrv 10 months ago
- 1 comment
Labels: bug
#3086 - Node Name Error : ValueError: Could not build path with entities {'subject': 'Subject1', 'run': 01, 'suffix': 'bold', 'datatype': 'figures', 'extension': 'html', 'desc': 'validation'}.
Issue -
State: closed - Opened by belfinrv 10 months ago
- 1 comment
Labels: bug
#3085 - ENH: Add MSMSulc
Pull Request -
State: closed - Opened by mgxd 10 months ago
- 1 comment
#3085 - ENH: Add MSMSulc
Pull Request -
State: open - Opened by mgxd 10 months ago
- 1 comment
#3084 - ENH: Add MSMSulc
Pull Request -
State: closed - Opened by mgxd 10 months ago
- 2 comments
#3084 - ENH: Add MSMSulc
Pull Request -
State: closed - Opened by mgxd 10 months ago
- 2 comments
#3083 - FileNotFoundError: 'aparc_a2009s_stats' of a ReconAll interface
Issue -
State: closed - Opened by celprov 10 months ago
- 1 comment
Labels: bug
#3083 - FileNotFoundError: 'aparc_a2009s_stats' of a ReconAll interface
Issue -
State: closed - Opened by celprov 10 months ago
- 1 comment
Labels: bug
#3082 - ENH: Add reporting workflow for BOLD fit
Pull Request -
State: closed - Opened by effigies 10 months ago
- 8 comments
Labels: next
#3082 - ENH: Add reporting workflow for BOLD fit
Pull Request -
State: open - Opened by effigies 10 months ago
- 2 comments
Labels: next
#3081 - ENH: Generate anatomical derivatives useful for resampling
Pull Request -
State: open - Opened by effigies 11 months ago
- 1 comment
Labels: next
#3081 - ENH: Generate anatomical derivatives useful for resampling
Pull Request -
State: closed - Opened by effigies 11 months ago
- 4 comments
Labels: next
#3080 - One visual report per session for dataset with many sessions for a single subject
Issue -
State: open - Opened by celprov 11 months ago
#3080 - One visual report per session for dataset with many sessions for a single subject
Issue -
State: closed - Opened by celprov 11 months ago
- 1 comment
Labels: feature, reports, impact: medium, effort: medium
#3079 - CI: Stop testing legacy layout
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
#3079 - CI: Stop testing legacy layout
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
Labels: next
#3078 - RF: Update derivative cache spec, calculate per-BOLD, reuse boldref2fmap
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
Labels: next
#3077 - FIX: Update connections to unwarp_wf, convert ITK transforms to text
Pull Request -
State: closed - Opened by effigies 11 months ago
Labels: next
#3076 - MNT: Pin sdcflows 2.5.x
Pull Request -
State: closed - Opened by effigies 11 months ago
- 2 comments
#3076 - MNT: Pin sdcflows 2.5.x
Pull Request -
State: open - Opened by effigies 11 months ago
- 1 comment
#3075 - RF: Update workflow to use sdcflows@master unwarp_wf
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
#3073 - MNT: Update environment
Pull Request -
State: closed - Opened by effigies 11 months ago
- 3 comments
#3072 - Build(deps): Bump tornado from 6.3.2 to 6.3.3
Pull Request -
State: closed - Opened by dependabot[bot] 11 months ago
- 3 comments
Labels: dependencies
#3071 - `--cifti-output` + `--fs-no-reconall` produces confusing error messages
Issue -
State: open - Opened by effigies 11 months ago
Labels: bug, impact: low, effort: low
#3070 - Changes needed to satisfy current derivatives validator
Issue -
State: open - Opened by effigies 11 months ago
Labels: bug
#3070 - Changes needed to satisfy current derivatives validator
Issue -
State: open - Opened by effigies 11 months ago
Labels: bug
#3069 - Segmentation fault error
Issue -
State: closed - Opened by caaperezag 11 months ago
- 1 comment
Labels: bug
#3068 - Running fmriprep on M2 chip Mac using Docker
Issue -
State: closed - Opened by MtKana 11 months ago
- 4 comments
Labels: bug
#3067 - MNT: Depend on newer sphinx
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
#3066 - CI: Improve tag detection for docker builds
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
#3066 - CI: Improve tag detection for docker builds
Pull Request -
State: closed - Opened by effigies 11 months ago
- 1 comment
#3065 - fMRIPrep on TBI data
Issue -
State: closed - Opened by shilpitju1 11 months ago
- 8 comments
#3064 - ENH: insert gradunwarp in bold workflow
Pull Request -
State: open - Opened by bpinsard 11 months ago
- 1 comment
#3064 - ENH: insert gradunwarp in bold workflow
Pull Request -
State: open - Opened by bpinsard 11 months ago
- 1 comment
#3063 - Bump certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
- 3 comments
Labels: dependencies
#3063 - Bump certifi from 2023.5.7 to 2023.7.22
Pull Request -
State: open - Opened by dependabot[bot] 12 months ago
- 1 comment
Labels: dependencies
#3062 - PATCH: Use mutualinfo cost function for MCFLIRT
Pull Request -
State: closed - Opened by effigies 12 months ago
- 5 comments
#3061 - MNT: Install ANTs from conda-forge
Pull Request -
State: closed - Opened by effigies 12 months ago
- 8 comments
#3061 - MNT: Install ANTs from conda-forge
Pull Request -
State: closed - Opened by effigies 12 months ago
- 8 comments
#3060 - FIX: Pass sbref files to SyN workflow
Pull Request -
State: closed - Opened by effigies 12 months ago
- 3 comments
#3060 - FIX: Pass sbref files to SyN workflow
Pull Request -
State: closed - Opened by effigies 12 months ago
- 3 comments
#3059 - Low process ulimits can result in missing output failures (here in fsl2itk)
Issue -
State: closed - Opened by Shotgunosine 12 months ago
- 26 comments
Labels: faq