Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/fmriprep issues and pull requests
#3356 - Mention fMRIPost-AROMA in parser documentation
Pull Request -
State: closed - Opened by tsalo about 1 month ago
- 6 comments
#3356 - Mention fMRIPost-AROMA in parser documentation
Pull Request -
State: closed - Opened by tsalo about 1 month ago
- 6 comments
#3355 - Mention fMRIPost-AROMA in documentation
Issue -
State: closed - Opened by tsalo about 1 month ago
- 1 comment
Labels: documentation
#3355 - Mention fMRIPost-AROMA in documentation
Issue -
State: closed - Opened by tsalo about 1 month ago
- 1 comment
Labels: documentation
#3354 - SDC is not working on multiple files only
Issue -
State: closed - Opened by sognoe about 1 month ago
- 1 comment
Labels: bug
#3354 - SDC is not working on multiple files only
Issue -
State: closed - Opened by sognoe about 1 month ago
- 1 comment
Labels: bug
#3353 - REL: 24.1.0
Pull Request -
State: open - Opened by effigies about 1 month ago
- 1 comment
#3353 - REL: 24.1.0
Pull Request -
State: open - Opened by effigies about 1 month ago
- 1 comment
#3352 - RF: Switch from DerivativesDataSinks to Prep/Save nodes
Pull Request -
State: open - Opened by effigies about 1 month ago
#3352 - RF: Switch from DerivativesDataSinks to Prep/Save nodes
Pull Request -
State: open - Opened by effigies about 1 month ago
#3351 - cosine regressors
Issue -
State: open - Opened by TrevorKMDay about 1 month ago
- 2 comments
Labels: documentation
#3351 - cosine regressors
Issue -
State: open - Opened by TrevorKMDay about 1 month ago
- 2 comments
Labels: documentation
#3350 - fmriPrep seems to ignore the single band image.
Issue -
State: open - Opened by zhitao-guo about 1 month ago
- 8 comments
Labels: bug
#3350 - fmriPrep seems to ignore the single band image.
Issue -
State: open - Opened by zhitao-guo about 1 month ago
- 8 comments
Labels: bug
#3349 - BOLD Summary Report node is included in the ``--anat-only`` workflow
Issue -
State: open - Opened by oesteban about 1 month ago
Labels: bug
#3349 - BOLD Summary Report node is included in the ``--anat-only`` workflow
Issue -
State: open - Opened by oesteban about 1 month ago
Labels: bug
#3348 - BIDS filters file only accepts lowercase for modality-wise dictionaries (e.g., T1w -> t1w)
Issue -
State: open - Opened by oesteban about 1 month ago
Labels: bug
#3348 - BIDS filters file only accepts lowercase for modality-wise dictionaries (e.g., T1w -> t1w)
Issue -
State: open - Opened by oesteban about 1 month ago
Labels: bug
#3347 - Fieldmap SDC from v24.0.0 seems to introduce artifact for some participants
Issue -
State: open - Opened by michael-s-cohen-2 about 2 months ago
Labels: bug
#3347 - Fieldmap SDC from v24.0.0 seems to introduce artifact for some participants
Issue -
State: open - Opened by michael-s-cohen-2 about 2 months ago
Labels: bug
#3345 - nipreps/fmriprep:20.2.8 missing
Issue -
State: closed - Opened by gdevenyi about 2 months ago
- 8 comments
#3345 - nipreps/fmriprep:20.2.8 missing
Issue -
State: closed - Opened by gdevenyi about 2 months ago
- 8 comments
#3343 - fMRIPrep failed using --use-syn-sdc
Issue -
State: open - Opened by m9080212 about 2 months ago
Labels: bug
#3343 - fMRIPrep failed using --use-syn-sdc
Issue -
State: open - Opened by m9080212 about 2 months ago
- 1 comment
Labels: bug
#3342 - Module ds_std_volumes_wf has no input called inputnode.t1w_preproc
Issue -
State: closed - Opened by CogBrainHealthLab about 2 months ago
- 4 comments
Labels: bug
#3342 - Module ds_std_volumes_wf has no input called inputnode.t1w_preproc
Issue -
State: closed - Opened by CogBrainHealthLab about 2 months ago
- 4 comments
Labels: bug
#3341 - Explicitly define volumetric space and resolution in CIFTI outputs
Issue -
State: open - Opened by tsalo 2 months ago
- 2 comments
Labels: CIFTI / Grayordinates
#3341 - Explicitly define volumetric space and resolution in CIFTI outputs
Issue -
State: open - Opened by tsalo 2 months ago
- 2 comments
Labels: CIFTI / Grayordinates
#3340 - ENH: Support flexible CIFTI combinations
Pull Request -
State: open - Opened by tsalo 2 months ago
- 1 comment
Labels: feature, CIFTI / Grayordinates
#3339 - inflated.surf.gii and smoothwm.surf.gii are missing
Issue -
State: closed - Opened by hx-mao 2 months ago
- 1 comment
Labels: documentation
#3339 - inflated.surf.gii and smoothwm.surf.gii are missing
Issue -
State: closed - Opened by hx-mao 2 months ago
- 1 comment
Labels: documentation
#3338 - RF: Replace `config.execution.fmriprep_dir` uses in BIDSURI calls with `output_dir` parameter
Pull Request -
State: closed - Opened by tsalo 2 months ago
- 3 comments
Labels: refactoring
#3337 - Replace `config.execution.fmriprep_dir` uses in BIDSURI calls with `output_dir` parameter
Issue -
State: closed - Opened by tsalo 2 months ago
- 1 comment
Labels: refactoring
#3336 - Minimally preprocess BOLD phase data
Issue -
State: open - Opened by tsalo 2 months ago
Labels: feature
#3336 - Minimally preprocess BOLD phase data
Issue -
State: open - Opened by tsalo 2 months ago
Labels: feature
#3335 - chore(deps): Update environment to use pybids 0.17.0
Pull Request -
State: closed - Opened by effigies 2 months ago
- 1 comment
#3335 - chore(deps): Update environment to use pybids 0.17.0
Pull Request -
State: closed - Opened by effigies 2 months ago
- 1 comment
#3334 - Installation of FSL with conda potentially incomplete
Issue -
State: closed - Opened by oesteban 2 months ago
- 3 comments
Labels: bug
#3334 - Installation of FSL with conda potentially incomplete
Issue -
State: closed - Opened by oesteban 2 months ago
- 3 comments
Labels: bug
#3333 - RF: Adapt to less T1w-centric smriprep
Pull Request -
State: closed - Opened by effigies 2 months ago
- 1 comment
#3333 - RF: Adapt to less T1w-centric smriprep
Pull Request -
State: closed - Opened by effigies 2 months ago
- 1 comment
#3332 - The output of fmriprep is incomplete
Issue -
State: open - Opened by WangYunHong98 2 months ago
- 6 comments
Labels: bug
#3332 - The output of fmriprep is incomplete
Issue -
State: open - Opened by WangYunHong98 2 months ago
- 1 comment
Labels: bug
#3330 - Add other CIFTI spaces
Issue -
State: open - Opened by tsalo 3 months ago
- 12 comments
Labels: feature, CIFTI / Grayordinates
#3329 - 20.2.8 release?
Issue -
State: closed - Opened by effigies 3 months ago
- 5 comments
#3328 - FIX: LTS package build
Pull Request -
State: open - Opened by effigies 3 months ago
#3328 - FIX: LTS package build
Pull Request -
State: closed - Opened by effigies 3 months ago
#3326 - chore(dev): Move to tox to simplify test/CI setup
Pull Request -
State: closed - Opened by effigies 3 months ago
- 3 comments
#3325 - fix(doc-build): Address errors/warnings in RTD builds
Pull Request -
State: closed - Opened by effigies 3 months ago
#3325 - fix(doc-build): Address errors/warnings in RTD builds
Pull Request -
State: closed - Opened by effigies 3 months ago
#3324 - DOC: Read html_baseurl from RTD environment, if available
Pull Request -
State: closed - Opened by effigies 3 months ago
#3324 - DOC: Read html_baseurl from RTD environment, if available
Pull Request -
State: closed - Opened by effigies 3 months ago
#3323 - rf(resources): Use acres over vendored data loader
Pull Request -
State: closed - Opened by effigies 3 months ago
- 2 comments
#3322 - [Errno -3] Temporary failure in name resolution
Issue -
State: closed - Opened by WangYunHong98 3 months ago
- 2 comments
Labels: bug
#3321 - CI: Fix expected outputs for fieldmaps
Pull Request -
State: closed - Opened by effigies 3 months ago
- 1 comment
#3320 - FIX: Validate and summarize multi-volume sbrefs
Pull Request -
State: closed - Opened by effigies 3 months ago
- 1 comment
#3319 - n4_correct fails for datasets with multi-volume sbrefs
Issue -
State: closed - Opened by effigies 3 months ago
Labels: bug
#3318 - fMRIPrep preprocessing problem
Issue -
State: open - Opened by Chen1997237 3 months ago
Labels: bug
#3318 - fMRIPrep preprocessing problem
Issue -
State: open - Opened by Chen1997237 3 months ago
- 1 comment
Labels: bug
#3317 - Issues in final preprocessing run
Issue -
State: closed - Opened by NeuroJo-RA 3 months ago
- 4 comments
Labels: bug
#3317 - Issues in final preprocessing run
Issue -
State: open - Opened by NeuroJo-RA 3 months ago
- 3 comments
Labels: bug
#3315 - Allow generating confounds at resampling stage
Issue -
State: open - Opened by effigies 3 months ago
#3314 - N4BiasFieldCorrection fails on multiple run dataset
Issue -
State: open - Opened by mariagiuliat 4 months ago
- 1 comment
Labels: bug
#3314 - N4BiasFieldCorrection fails on multiple run dataset
Issue -
State: open - Opened by mariagiuliat 4 months ago
- 1 comment
Labels: bug
#3313 - ENH: integrate left-right flip detection
Pull Request -
State: open - Opened by celprov 4 months ago
- 1 comment
#3313 - ENH: integrate left-right flip detection
Pull Request -
State: open - Opened by celprov 4 months ago
- 1 comment
#3312 - DOC: Add benchmark page
Pull Request -
State: closed - Opened by effigies 4 months ago
- 1 comment
#3311 - Add optional Multiband Artifact Regression in Simultaneous Slices (MARSS) step
Issue -
State: open - Opened by tsalo 4 months ago
Labels: feature
#3311 - Add optional Multiband Artifact Regression in Simultaneous Slices (MARSS) step
Issue -
State: open - Opened by tsalo 4 months ago
Labels: feature
#3310 - Bump scikit-learn from 1.4.2 to 1.5.0
Pull Request -
State: open - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies, python
#3308 - Add optional NORDIC denoising step
Issue -
State: open - Opened by tsalo 4 months ago
- 8 comments
Labels: feature
#3308 - Add optional NORDIC denoising step
Issue -
State: open - Opened by tsalo 4 months ago
- 4 comments
Labels: feature
#3307 - nipype.workflow CRITICAL: fMRIPrep failed: [Errno 13] Permission denied
Issue -
State: closed - Opened by CogBrainHealthLab 4 months ago
- 5 comments
Labels: bug
#3306 - Prerun freesurfer with -hires and -expert flags are not able to be used with fmriprep
Issue -
State: open - Opened by adam-coates 4 months ago
- 1 comment
Labels: bug
#3306 - Prerun freesurfer with -hires and -expert flags are not able to be used with fmriprep
Issue -
State: open - Opened by adam-coates 4 months ago
- 1 comment
Labels: bug
#3305 - Failed to generate the boilerplate
Issue -
State: open - Opened by LueHa 4 months ago
- 1 comment
Labels: bug
#3305 - Failed to generate the boilerplate
Issue -
State: open - Opened by LueHa 4 months ago
- 1 comment
Labels: bug
#3304 - Bump tornado from 6.4 to 6.4.1
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies, python
#3303 - msm options no longer work in FSL 6.0.7.11
Issue -
State: closed - Opened by CogBrainHealthLab 4 months ago
- 2 comments
Labels: bug
#3302 - ENH: Add appropriate titles to HTML reports
Pull Request -
State: closed - Opened by effigies 4 months ago
- 1 comment
#3301 - REL: 24.0.0
Pull Request -
State: closed - Opened by effigies 4 months ago
- 1 comment
#3300 - RF: Fix ITK warp conversion to nitransforms format
Pull Request -
State: closed - Opened by effigies 4 months ago
- 6 comments
#3299 - Crash at workflow build time if total readout time cannot be determined
Issue -
State: open - Opened by effigies 4 months ago
#3299 - Crash at workflow build time if total readout time cannot be determined
Issue -
State: open - Opened by effigies 4 months ago
#3298 - MNT: Pin libitk 5.3 and note dependencies
Pull Request -
State: closed - Opened by effigies 4 months ago
- 1 comment
#3297 - Use BIDSURI in init_ds_boldmask_wf
Pull Request -
State: closed - Opened by tsalo 4 months ago
- 1 comment
Labels: bug
#3296 - FIX: Ensure shape matches template during resampling
Pull Request -
State: closed - Opened by mgxd 4 months ago
- 1 comment
#3295 - numpy.linalg.linalg.LinAlgError: SVD did not converge
Issue -
State: open - Opened by begumbabur 4 months ago
Labels: bug
#3294 - Failure in FMAP and
Issue -
State: open - Opened by ikarmann 5 months ago
Labels: bug
#3293 - Bump requests from 2.31.0 to 2.32.0
Pull Request -
State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python
#3293 - Bump requests from 2.31.0 to 2.32.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies, python
#3292 - FIX: Write out boldref-space brain mask with minimal level
Pull Request -
State: closed - Opened by tsalo 5 months ago
- 2 comments
Labels: bug
#3291 - FIX: Write out boldref-space brain mask with minimal level
Pull Request -
State: closed - Opened by tsalo 5 months ago
- 2 comments
Labels: bug
#3290 - boldref-space brain mask appears to be missing from minimal outputs
Issue -
State: closed - Opened by tsalo 5 months ago
- 2 comments
Labels: bug
#3289 - subprocess.CalledProcessError: Command '['bids-validator', '/data', '-c', '/tmp/tmp3_xycsud.json']' died with <Signals.SIGABRT: 6>.
Issue -
State: closed - Opened by m9080212 5 months ago
- 2 comments
Labels: bug
#3289 - subprocess.CalledProcessError: Command '['bids-validator', '/data', '-c', '/tmp/tmp3_xycsud.json']' died with <Signals.SIGABRT: 6>.
Issue -
State: closed - Opened by m9080212 5 months ago
- 1 comment
Labels: bug
#3288 - Numerical stability testing within series patch releases
Issue -
State: open - Opened by mgxd 5 months ago
- 1 comment
Labels: CI, potential hackathon project
#3288 - Numerical stability testing within series patch releases
Issue -
State: open - Opened by mgxd 5 months ago
Labels: CI, potential hackathon project
#3287 - [FIX] Add "double" type to allowed DisplacementFieldTransform
Pull Request -
State: closed - Opened by kjamison 5 months ago
- 2 comments
#3287 - [FIX] Add "double" type to allowed DisplacementFieldTransform
Pull Request -
State: closed - Opened by kjamison 5 months ago
- 2 comments