nipreps/fmriprep-rodents issues and pull requests

#56 - CI: add Docker local registry

Pull Request - State: closed - Opened by eilidhmacnicol over 1 year ago - 1 comment

#55 - ENH: SDC integration

Pull Request - State: open - Opened by eilidhmacnicol over 1 year ago

#54 - Docker overhaul

Pull Request - State: closed - Opened by eilidhmacnicol over 1 year ago - 8 comments

#53 - Maint: docker overhaul

Pull Request - State: closed - Opened by eilidhmacnicol over 1 year ago

#53 - Maint: docker overhaul

Pull Request - State: closed - Opened by eilidhmacnicol over 1 year ago

#52 - fMRIPrep generalizations (m1-12)

Issue - State: open - Opened by esavary almost 2 years ago

#52 - fMRIPrep generalizations (m1-12)

Issue - State: open - Opened by esavary almost 2 years ago

#51 - FIX: No BOLD images found for participant

Pull Request - State: open - Opened by Hyedryn almost 2 years ago - 1 comment

#51 - FIX: No BOLD images found for participant

Pull Request - State: open - Opened by Hyedryn almost 2 years ago - 1 comment

#50 - RuntimeError: No BOLD images found for participant <001> and task <all>

Issue - State: open - Opened by Hyedryn almost 2 years ago
Labels: bug

#49 - MAINT: Rotate CircleCI secrets and setup up org-level context

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 1 comment

#48 - Duplicate node name error

Issue - State: open - Opened by LenaDorfschmidt about 2 years ago - 7 comments
Labels: bug, question

#48 - Duplicate node name error

Issue - State: open - Opened by LenaDorfschmidt about 2 years ago - 7 comments
Labels: bug, question

#47 - maint: docker and dependency overhaul

Pull Request - State: closed - Opened by eilidhmacnicol over 2 years ago - 4 comments

#47 - maint: docker and dependency overhaul

Pull Request - State: closed - Opened by eilidhmacnicol over 2 years ago - 4 comments

#46 - Singularity: No space left on device

Issue - State: open - Opened by Hierakonpolis over 2 years ago - 7 comments
Labels: bug

#46 - Singularity: No space left on device

Issue - State: open - Opened by Hierakonpolis over 2 years ago - 7 comments
Labels: bug

#45 - FIX: add fast basescale args

Pull Request - State: closed - Opened by eilidhmacnicol almost 3 years ago

#45 - FIX: add fast basescale args

Pull Request - State: closed - Opened by eilidhmacnicol almost 3 years ago

#44 - FIX: anatomical discrete segmentation improvements

Pull Request - State: closed - Opened by eilidhmacnicol almost 3 years ago - 1 comment

#44 - FIX: anatomical discrete segmentation improvements

Pull Request - State: closed - Opened by eilidhmacnicol almost 3 years ago - 1 comment

#43 - MAINT: Test pulling if there's no cache

Pull Request - State: closed - Opened by oesteban about 3 years ago

#43 - MAINT: Test pulling if there's no cache

Pull Request - State: closed - Opened by oesteban about 3 years ago

#42 - MAINT: Revise ``Dockerfile`` and update for new CircleCI subscription

Pull Request - State: closed - Opened by oesteban about 3 years ago

#42 - MAINT: Revise ``Dockerfile`` and update for new CircleCI subscription

Pull Request - State: closed - Opened by oesteban about 3 years ago

#41 - Version Error When Running Docker Image

Issue - State: closed - Opened by lassestahnke about 3 years ago - 2 comments
Labels: bug, documentation

#41 - Version Error When Running Docker Image

Issue - State: closed - Opened by lassestahnke about 3 years ago - 2 comments
Labels: bug, documentation

#40 - ENH: reference workflow N4 improvements

Pull Request - State: closed - Opened by eilidhmacnicol about 3 years ago

#40 - ENH: reference workflow N4 improvements

Pull Request - State: closed - Opened by eilidhmacnicol about 3 years ago

#39 - FIX: Cleanup dependencies

Pull Request - State: closed - Opened by oesteban about 3 years ago

#39 - FIX: Cleanup dependencies

Pull Request - State: closed - Opened by oesteban about 3 years ago

#38 - ENH: reference workflow 2.0

Pull Request - State: closed - Opened by eilidhmacnicol about 3 years ago - 5 comments

#38 - ENH: reference workflow 2.0

Pull Request - State: closed - Opened by eilidhmacnicol about 3 years ago - 5 comments

#37 - RF: remove neurodebian

Pull Request - State: closed - Opened by eilidhmacnicol about 3 years ago - 2 comments

#36 - maint: niworkflows 1.4.x compatibility

Pull Request - State: closed - Opened by eilidhmacnicol about 3 years ago - 4 comments

#35 - Reference workflow integration

Pull Request - State: closed - Opened by eilidhmacnicol over 3 years ago

#35 - Reference workflow integration

Pull Request - State: closed - Opened by eilidhmacnicol over 3 years ago

#34 - Orientation - flag or detection?

Issue - State: open - Opened by eilidhmacnicol almost 4 years ago
Labels: enhancement, question

#34 - Orientation - flag or detection?

Issue - State: open - Opened by eilidhmacnicol almost 4 years ago
Labels: enhancement, question

#33 - Do not run artsBrainExtraction twice - fast BOLD reference masking

Issue - State: closed - Opened by oesteban almost 4 years ago - 3 comments
Labels: enhancement

#33 - Do not run artsBrainExtraction twice - fast BOLD reference masking

Issue - State: closed - Opened by oesteban almost 4 years ago - 3 comments
Labels: enhancement

#32 - Do we want user tracking? Should we stick with Sentry or maybe try Popylar?

Issue - State: open - Opened by oesteban almost 4 years ago
Labels: question

#32 - Do we want user tracking? Should we stick with Sentry or maybe try Popylar?

Issue - State: open - Opened by oesteban almost 4 years ago
Labels: question

#31 - MAINT: Upgrade ANTs to 2.3.3 in Docker images

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#31 - MAINT: Upgrade ANTs to 2.3.3 in Docker images

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#30 - ENH: Quick revision of Dockerfile

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#29 - MAINT: Change packagename to ``fprodents``, keep distribution name

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#29 - MAINT: Change packagename to ``fprodents``, keep distribution name

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#28 - Migrate project over to NiPreps

Issue - State: closed - Opened by oesteban almost 4 years ago
Labels: enhancement

#28 - Migrate project over to NiPreps

Issue - State: closed - Opened by oesteban almost 4 years ago
Labels: enhancement

#27 - Calculate FD from ``3dVolReg`` output parameters

Issue - State: open - Opened by oesteban almost 4 years ago
Labels: enhancement

#27 - Calculate FD from ``3dVolReg`` output parameters

Issue - State: open - Opened by oesteban almost 4 years ago
Labels: enhancement

#26 - Workflow "figure 1" in README

Issue - State: open - Opened by oesteban almost 4 years ago
Labels: documentation

#26 - Workflow "figure 1" in README

Issue - State: open - Opened by oesteban almost 4 years ago
Labels: documentation

#25 - Fix: adjust csf erosion

Pull Request - State: closed - Opened by eilidhmacnicol almost 4 years ago

#25 - Fix: adjust csf erosion

Pull Request - State: closed - Opened by eilidhmacnicol almost 4 years ago

#24 - Default derivatives output folder should be "fmriprep" instead of "fmriprep_rodents"

Issue - State: closed - Opened by oesteban almost 4 years ago - 1 comment
Labels: enhancement

#24 - Default derivatives output folder should be "fmriprep" instead of "fmriprep_rodents"

Issue - State: closed - Opened by oesteban almost 4 years ago - 1 comment
Labels: enhancement

#23 - Rename package to "fprodents"?

Issue - State: closed - Opened by oesteban almost 4 years ago - 5 comments
Labels: enhancement

#23 - Rename package to "fprodents"?

Issue - State: closed - Opened by oesteban almost 4 years ago - 5 comments
Labels: enhancement

#22 - FIX: final workflow changes

Pull Request - State: closed - Opened by eilidhmacnicol almost 4 years ago

#22 - FIX: final workflow changes

Pull Request - State: closed - Opened by eilidhmacnicol almost 4 years ago

#21 - FIX: Strip out surface-related processing

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#21 - FIX: Strip out surface-related processing

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#20 - MAINT: Run ``black`` on the whole repo and fix PEP8 errors

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#20 - MAINT: Run ``black`` on the whole repo and fix PEP8 errors

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#19 - DOC: Update README

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#19 - DOC: Update README

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#18 - MAINT: Relicense as Apache-2.0

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#18 - MAINT: Relicense as Apache-2.0

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#17 - MAINT: Set-up GH Actions to check packaging and linting

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#17 - MAINT: Set-up GH Actions to check packaging and linting

Pull Request - State: closed - Opened by oesteban almost 4 years ago

#16 - MAINT: Migrate testdata to nipreps-data and remove docker-wrapper

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#16 - MAINT: Migrate testdata to nipreps-data and remove docker-wrapper

Pull Request - State: closed - Opened by oesteban almost 4 years ago - 1 comment

#15 - ENH: Replace MCFLIRT with 3dVolReg

Pull Request - State: closed - Opened by mgxd almost 4 years ago - 1 comment

#15 - ENH: Replace MCFLIRT with 3dVolReg

Pull Request - State: closed - Opened by mgxd almost 4 years ago - 1 comment

#14 - FIX: functional workflow

Pull Request - State: closed - Opened by eilidhmacnicol almost 4 years ago - 4 comments

#13 - Fix functional workflow

Issue - State: closed - Opened by eilidhmacnicol almost 4 years ago
Labels: bug

#13 - Fix functional workflow

Issue - State: closed - Opened by eilidhmacnicol almost 4 years ago
Labels: bug

#12 - Finalizing anatomical processing

Issue - State: closed - Opened by mgxd about 4 years ago - 5 comments

#12 - Finalizing anatomical processing

Issue - State: closed - Opened by mgxd about 4 years ago - 5 comments

#11 - FIX: Avoid fetching single hemisphere masks

Pull Request - State: closed - Opened by mgxd about 4 years ago

#11 - FIX: Avoid fetching single hemisphere masks

Pull Request - State: closed - Opened by mgxd about 4 years ago

#10 - ENH: Functional workflow

Pull Request - State: closed - Opened by mgxd over 4 years ago - 1 comment

#10 - ENH: Functional workflow

Pull Request - State: closed - Opened by mgxd over 4 years ago - 1 comment

#9 - CI: Mark anat derivatives as artifacts

Pull Request - State: closed - Opened by mgxd over 4 years ago - 1 comment

#9 - CI: Mark anat derivatives as artifacts

Pull Request - State: closed - Opened by mgxd over 4 years ago - 1 comment

#8 - Add sample data to CircleCI

Issue - State: closed - Opened by mgxd over 4 years ago - 1 comment
Labels: enhancement

#8 - Add sample data to CircleCI

Issue - State: closed - Opened by mgxd over 4 years ago - 1 comment
Labels: enhancement

#7 - WIP: Bring nirodents brain extraction to anatomical preprocessing

Pull Request - State: closed - Opened by mgxd over 4 years ago - 3 comments

#6 - Expected structural outputs

Issue - State: closed - Opened by mgxd over 4 years ago - 1 comment

#5 - Reset Zenodo contributors, etc.

Issue - State: open - Opened by effigies over 4 years ago - 3 comments
Labels: enhancement

#5 - Reset Zenodo contributors, etc.

Issue - State: open - Opened by effigies over 4 years ago - 3 comments
Labels: enhancement

#4 - Update README

Issue - State: closed - Opened by effigies over 4 years ago
Labels: documentation

#4 - Update README

Issue - State: closed - Opened by effigies over 4 years ago
Labels: documentation

#3 - Fix doc build

Issue - State: open - Opened by effigies over 4 years ago - 1 comment
Labels: enhancement

#3 - Fix doc build

Issue - State: open - Opened by effigies over 4 years ago - 1 comment
Labels: enhancement

#2 - Pare down Docker

Issue - State: closed - Opened by effigies over 4 years ago - 3 comments
Labels: question

#2 - Pare down Docker

Issue - State: closed - Opened by effigies over 4 years ago - 3 comments
Labels: question

#1 - MNT: Rename package to fmriprep-rodents, module to fmriprep_rodents

Pull Request - State: closed - Opened by effigies over 4 years ago - 1 comment

GitHub / nipreps/fmriprep-rodents issues and pull requests