nipreps/fmripost-aroma issues and pull requests

#85 - Multi-session with single anat produces error

Issue - State: open - Opened by arovai 23 days ago - 3 comments
Labels: bug

#84 - Bump docker/setup-buildx-action from 3.6.1 to 3.7.1

Pull Request - State: open - Opened by dependabot[bot] 23 days ago
Labels: dependencies, github_actions

#83 - FIX: Gracefully warn when no motion components are found

Pull Request - State: closed - Opened by jczimm 25 days ago - 1 comment

#82 - ica_aroma_confound_extraction crashes when no motion components are found

Issue - State: closed - Opened by jczimm 25 days ago
Labels: bug

#81 - rf(py314): Replace deprecated pkgutil.find_loader

Pull Request - State: closed - Opened by effigies about 1 month ago - 1 comment

#80 - Bump docker/build-push-action from 6.7.0 to 6.9.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, github_actions

#79 - Collect and apply field maps

Pull Request - State: open - Opened by tsalo 2 months ago - 1 comment

#78 - Fix subject collection (again)

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#77 - Limit file collection to specified subject

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#76 - Fix bids-validator installation and usage

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#75 - Treat anatomical data differently in data collection

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#74 - BIDS validator not installed correctly?

Issue - State: closed - Opened by tsalo 2 months ago - 2 comments
Labels: bug

#73 - Write out GeneratedBy correctly

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#72 - "About" reportlet is generated for each BOLD file

Issue - State: open - Opened by tsalo 2 months ago
Labels: bug

#71 - Make issue templates specific to fMRIPost workflows

Issue - State: open - Opened by tsalo 2 months ago
Labels: documentation

#70 - GeneratedBy field isn't inherited/modified correctly

Issue - State: closed - Opened by tsalo 2 months ago
Labels: bug

#69 - Define padded mixing arr if skip_vols are 0

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#68 - Fix shape check

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#67 - Fix confound generation

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#67 - Fix confound generation

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#66 - Allow run in output filenames

Pull Request - State: closed - Opened by tsalo 2 months ago - 1 comment
Labels: bug

#65 - Collect common functions/interfaces in separate package?

Issue - State: open - Opened by tsalo 3 months ago

#64 - Use GenericLabel over MultiLabel

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment

#63 - Field maps not being collected or applied

Issue - State: open - Opened by tsalo 3 months ago
Labels: bug

#62 - Revisit collection of anatomical dseg file

Issue - State: closed - Opened by tsalo 3 months ago - 2 comments
Labels: bug

#61 - Write out denoised data to requested output spaces

Pull Request - State: open - Opened by tsalo 3 months ago - 1 comment

#60 - Infer the slice timing reference from fMRIPrep derivatives

Issue - State: open - Opened by tsalo 3 months ago - 2 comments
Labels: bug

#59 - Fix orthaggr confound bug

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: bug

#58 - Apply transforms to raw data when MNI6 derivatives aren't available

Pull Request - State: closed - Opened by tsalo 3 months ago - 14 comments
Labels: enhancement

#57 - Support raw dataset + derivatives with transforms to MNI152NLin6Asym

Issue - State: closed - Opened by tsalo 3 months ago
Labels: enhancement

#56 - Add orthogonalized motion components to confounds file

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: breaking-change

#55 - Update docker.yml

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: maintenance, ignore-for-release

#54 - Try to fix release deployment

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: maintenance, ignore-for-release

#53 - Release Docker builds failing

Issue - State: closed - Opened by tsalo 3 months ago - 2 comments
Labels: bug, maintenance

#52 - Write out orthogonalized component time series

Issue - State: closed - Opened by tsalo 3 months ago
Labels: enhancement

#51 - Fix denoising

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: bug

#50 - Log messages are being duplicated

Issue - State: open - Opened by tsalo 3 months ago - 4 comments
Labels: bug

#49 - Add carpet plots to output

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment

#48 - Fix release tag

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: maintenance, ignore-for-release

#47 - Update installation documentation

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: documentation

#46 - Deploy to DockerHub with GitHub Action

Pull Request - State: closed - Opened by tsalo 3 months ago - 1 comment
Labels: maintenance

#45 - Double-check denoising code

Issue - State: closed - Opened by tsalo 4 months ago - 1 comment

#44 - Write out denoised data to requested output spaces

Pull Request - State: closed - Opened by tsalo 4 months ago - 2 comments

#43 - Draft CircleCI configuration

Pull Request - State: closed - Opened by tsalo 4 months ago - 7 comments
Labels: maintenance, ignore-for-release

#42 - Testing strategy

Issue - State: closed - Opened by tsalo 4 months ago - 3 comments

#41 - Write out compressed denoised files

Pull Request - State: closed - Opened by tsalo 4 months ago - 2 comments
Labels: enhancement

#40 - Denoise MNI152NLin6Asym:res-2

Pull Request - State: closed - Opened by tsalo 4 months ago - 5 comments
Labels: enhancement

#39 - Classification-only release?

Issue - State: closed - Opened by tsalo 4 months ago - 10 comments

#38 - Add other contributors

Pull Request - State: closed - Opened by tsalo 4 months ago - 1 comment

#37 - Add metric reportlet

Pull Request - State: closed - Opened by tsalo 4 months ago - 2 comments
Labels: enhancement

#36 - Acknowledge contributors to ME-ICA/aroma

Issue - State: closed - Opened by tsalo 6 months ago

#35 - Include ability to ingress ICA derivatives

Issue - State: open - Opened by tsalo 6 months ago
Labels: enhancement

#34 - Space iteration notes

Issue - State: open - Opened by effigies 6 months ago - 1 comment

#33 - Add HTML report figures back into workflow

Pull Request - State: closed - Opened by tsalo 6 months ago - 3 comments
Labels: enhancement

#32 - Add carpet plots for preprocessed and denoised BOLD data

Issue - State: closed - Opened by tsalo 6 months ago - 2 comments
Labels: enhancement

#31 - Native-space mask missing from test dataset

Issue - State: closed - Opened by tsalo 6 months ago - 2 comments
Labels: bug

#30 - Remove unused dependencies from Docker image

Pull Request - State: closed - Opened by tsalo 6 months ago - 1 comment

#29 - Test collect_derivatives function

Pull Request - State: closed - Opened by tsalo 6 months ago - 1 comment

#28 - [DATALAD] Added subdataset

Pull Request - State: closed - Opened by effigies 6 months ago - 5 comments

#27 - TEST: Get tests working

Pull Request - State: closed - Opened by effigies 6 months ago - 1 comment

#26 - Use config values in workflow

Pull Request - State: closed - Opened by tsalo 6 months ago

#25 - Clean up the workflows

Pull Request - State: closed - Opened by tsalo 6 months ago

#24 - Allow users to provide list/chain of transforms to MNI152NLin6Asym

Issue - State: open - Opened by tsalo 6 months ago
Labels: enhancement

#23 - Support CIFTI outputs?

Issue - State: open - Opened by tsalo 6 months ago - 1 comment
Labels: question

#22 - Add documentation dependencies

Pull Request - State: closed - Opened by tsalo 7 months ago - 1 comment

#21 - Add optional motion parameter filtering?

Issue - State: open - Opened by tsalo 7 months ago - 1 comment
Labels: enhancement

#20 - STY: Adopt ruff

Pull Request - State: closed - Opened by effigies 7 months ago - 1 comment

#19 - Add CI maintenance scripts

Pull Request - State: closed - Opened by tsalo 7 months ago - 2 comments

#18 - Implement AROMA classifier

Pull Request - State: closed - Opened by tsalo 7 months ago - 6 comments
Labels: enhancement

#17 - Finalize dependencies

Issue - State: closed - Opened by tsalo 7 months ago - 1 comment

#16 - Draft resampling workflow

Pull Request - State: closed - Opened by tsalo 7 months ago
Labels: enhancement

#15 - Build on ReadTheDocs, add PR builds

Issue - State: closed - Opened by effigies 7 months ago - 5 comments
Labels: documentation

#14 - Work on infrastructure

Pull Request - State: closed - Opened by tsalo 7 months ago - 2 comments
Labels: enhancement

#13 - No clear way to ignore known dummy frames for ICA-AROMA, etc...

Issue - State: closed - Opened by alexlicohen over 6 years ago - 23 comments

#12 - Support minimal derivatives from fMRIPrep

Issue - State: open - Opened by tsalo 12 months ago - 5 comments
Labels: enhancement

#11 - Add `mem_gb` to SUSAN and MELODIC nodes to avoid memory errors

Issue - State: closed - Opened by HippocampusGirl over 3 years ago - 9 comments

#10 - Retain ICA products in output directory

Issue - State: closed - Opened by tsalo over 4 years ago - 11 comments
Labels: effort: medium, impact: high

#9 - Single subject ICA as an option for denoising?

Issue - State: open - Opened by acjanes almost 5 years ago - 3 comments

#8 - Naming of html reports and aroma regressors

Issue - State: closed - Opened by burdinskid13 about 2 years ago - 4 comments

#7 - Copy over ICA-AROMA workflow from fMRIPrep 23.0.2

Pull Request - State: closed - Opened by tsalo about 1 year ago
Labels: enhancement

#6 - Version scheme

Issue - State: open - Opened by effigies over 1 year ago - 3 comments
Labels: bike-shedding

#5 - Fully reimplement AROMA as workflow

Issue - State: closed - Opened by effigies over 1 year ago
Labels: effort: high, impact: high

#4 - Rewrite as Pydra workflow

Issue - State: open - Opened by effigies over 1 year ago
Labels: effort: high, impact: high

#3 - Generate reports

Issue - State: closed - Opened by effigies over 1 year ago - 1 comment
Labels: effort: medium, impact: high

#2 - Copy AROMA workflow wholesale

Issue - State: closed - Opened by effigies over 1 year ago
Labels: effort: medium, good first issue, impact: high

#1 - BIDS App structure

Issue - State: closed - Opened by effigies over 1 year ago - 4 comments
Labels: effort: low, good first issue, impact: high

GitHub / nipreps/fmripost-aroma issues and pull requests